Wall clock time and date at job start Fri Apr 10 2020 18:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47715 * 2 1 4 4 C 1.52999 * 109.47162 * 120.00375 * 2 1 3 5 5 N 1.46502 * 109.47268 * 179.97438 * 4 2 1 6 6 C 1.34775 * 120.00038 * 179.97438 * 5 4 2 7 7 O 1.21588 * 120.00170 * 5.07780 * 6 5 4 8 8 N 1.34780 * 120.00110 * 185.08212 * 6 5 4 9 9 C 1.46920 * 120.62678 * 354.96631 * 8 6 5 10 10 C 1.53189 * 108.89174 * 126.46646 * 9 8 6 11 11 C 1.53039 * 109.31744 * 54.56197 * 10 9 8 12 12 C 1.50695 * 109.46297 * 178.63008 * 11 10 9 13 13 H 1.07994 * 120.00206 * 359.97438 * 12 11 10 14 14 C 1.37884 * 120.00162 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99861 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00162 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47091 * 90.00366 * 16 14 12 18 18 H 1.48501 * 109.46972 * 210.00099 * 16 14 12 19 19 H 1.48495 * 109.47110 * 330.00005 * 16 14 12 20 20 C 1.53047 * 109.53718 * 298.63797 * 11 10 9 21 21 C 1.46957 * 120.65247 * 174.78812 * 8 6 5 22 22 S 1.81400 * 109.47205 * 240.00108 * 2 1 3 23 23 C 1.81396 * 101.92169 * 59.99985 * 22 2 1 24 24 O 1.42098 * 108.58166 * 174.49036 * 22 2 1 25 25 O 1.42103 * 108.57916 * 305.51323 * 22 2 1 26 26 H 1.09000 * 109.47715 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46855 * 299.99828 * 1 2 3 28 28 H 1.09002 * 109.47219 * 59.99673 * 1 2 3 29 29 H 1.09001 * 109.47601 * 59.99437 * 4 2 1 30 30 H 1.09000 * 109.47070 * 299.99665 * 4 2 1 31 31 H 0.96994 * 120.00055 * 0.02562 * 5 4 2 32 32 H 1.08992 * 109.59100 * 6.60568 * 9 8 6 33 33 H 1.08999 * 109.58561 * 246.32132 * 9 8 6 34 34 H 1.09008 * 109.50031 * 174.51177 * 10 9 8 35 35 H 1.09000 * 109.49795 * 294.57905 * 10 9 8 36 36 H 1.09003 * 109.45754 * 58.65396 * 11 10 9 37 37 H 0.96993 * 119.99924 * 179.97438 * 15 14 12 38 38 H 1.08990 * 109.50032 * 181.31483 * 20 11 10 39 39 H 1.09008 * 109.49375 * 301.41198 * 20 11 10 40 40 H 1.08997 * 109.46830 * 113.75450 * 21 8 6 41 41 H 1.08996 * 109.71624 * 353.45648 * 21 8 6 42 42 H 1.09000 * 109.47301 * 60.00202 * 23 22 2 43 43 H 1.09006 * 109.47284 * 179.97438 * 23 22 2 44 44 H 1.09002 * 109.47417 * 300.00460 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5050 -0.7219 1.2489 6 6 4.1788 -1.3052 2.2599 7 8 3.5745 -1.9107 3.1239 8 7 5.5227 -1.2173 2.3133 9 6 6.2754 -0.5849 1.2214 10 6 7.1776 0.5056 1.8075 11 6 8.0539 -0.0991 2.9069 12 6 8.9666 0.9633 3.4628 13 1 8.9262 1.9689 3.0710 14 6 9.8534 0.6516 4.4716 15 7 9.9030 -0.5731 4.9483 16 14 10.9853 1.9684 5.1601 17 1 10.3168 2.6507 6.2970 18 1 12.2458 1.3405 5.6316 19 1 11.2933 2.9606 4.0991 20 6 7.1655 -0.6449 4.0273 21 6 6.2631 -1.7485 3.4662 22 16 2.1346 -0.8551 -1.4811 23 6 1.4229 0.1515 -2.8118 24 8 3.5496 -0.7331 -1.5285 25 8 1.5479 -2.1485 -1.5285 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.6766 -1.7490 1.2492 30 1 1.6767 -0.2075 2.1392 31 1 3.9900 -0.3018 0.5215 32 1 5.5811 -0.1405 0.5084 33 1 6.8870 -1.3335 0.7178 34 1 7.8117 0.9149 1.0210 35 1 6.5615 1.3001 2.2286 36 1 8.6517 -0.9097 2.4900 37 1 10.5270 -0.7925 5.6577 38 1 7.7907 -1.0544 4.8206 39 1 6.5494 0.1603 4.4279 40 1 6.8739 -2.5932 3.1479 41 1 5.5623 -2.0734 4.2352 42 1 1.7894 1.1747 -2.7291 43 1 1.7160 -0.2621 -3.7768 44 1 0.3360 0.1471 -2.7291 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540992216.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:34 Heat of formation + Delta-G solvation = -125.602045 kcal Electronic energy + Delta-G solvation = -25861.991079 eV Core-core repulsion = 22133.809791 eV Total energy + Delta-G solvation = -3728.181288 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.47310 -38.73612 -38.08305 -37.27435 -36.88309 -35.40635 -34.01115 -32.77750 -31.68402 -30.28297 -28.24505 -26.98531 -24.69736 -24.00036 -23.50190 -21.81729 -20.49791 -19.79368 -19.15310 -18.32075 -18.16160 -17.58745 -17.04644 -16.72440 -16.57305 -16.47069 -15.87942 -15.29042 -14.98579 -14.88692 -14.64467 -14.45405 -14.09251 -14.02727 -13.94962 -13.74990 -13.50609 -13.39359 -13.13968 -13.12508 -13.04016 -12.95597 -12.79177 -12.46297 -12.36863 -12.15791 -11.95207 -11.91748 -11.45876 -11.37973 -11.22076 -10.95496 -10.80222 -10.41099 -10.33360 -9.45559 -8.05719 -6.19911 -1.00180 1.43034 1.44172 1.53653 1.58156 1.78955 2.04233 2.45476 2.63604 2.79583 3.10082 3.20796 3.36315 3.71736 4.03717 4.09216 4.13042 4.21249 4.26633 4.31474 4.46802 4.48991 4.58197 4.61139 4.70204 4.71858 4.85866 4.90009 4.96702 5.01150 5.18264 5.22709 5.26633 5.33413 5.45432 5.46217 5.65873 5.95656 5.99888 6.12276 6.39244 6.87095 6.91373 7.44574 7.48102 8.98015 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.025855 B = 0.003023 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.714599 B = 9260.006322 C = 9666.517497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.571 4.571 3 H 0.179 0.821 4 C 0.140 3.860 5 N -0.756 5.756 6 C 0.702 3.298 7 O -0.633 6.633 8 N -0.621 5.621 9 C 0.112 3.888 10 C -0.113 4.113 11 C 0.044 3.956 12 C -0.531 4.531 13 H 0.055 0.945 14 C 0.011 3.989 15 N -0.916 5.916 16 Si 0.953 3.047 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.266 1.266 20 C -0.110 4.110 21 C 0.137 3.863 22 S 2.395 3.605 23 C -0.632 4.632 24 O -0.978 6.978 25 O -0.981 6.981 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.113 0.887 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.413 0.587 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.002 0.998 37 H 0.260 0.740 38 H 0.075 0.925 39 H 0.025 0.975 40 H 0.058 0.942 41 H 0.070 0.930 42 H 0.161 0.839 43 H 0.139 0.861 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.202 5.711 -16.939 27.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.681 4.681 3 H 0.196 0.804 4 C 0.016 3.984 5 N -0.420 5.420 6 C 0.403 3.597 7 O -0.515 6.515 8 N -0.356 5.356 9 C -0.010 4.010 10 C -0.152 4.152 11 C 0.026 3.974 12 C -0.569 4.569 13 H 0.073 0.927 14 C -0.187 4.187 15 N -0.556 5.556 16 Si 0.780 3.220 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.191 1.191 20 C -0.149 4.149 21 C 0.014 3.986 22 S 2.582 3.418 23 C -0.785 4.785 24 O -0.975 6.975 25 O -0.978 6.978 26 H 0.090 0.910 27 H 0.112 0.888 28 H 0.131 0.869 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.255 0.745 32 H 0.115 0.885 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.021 0.979 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.044 0.956 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.179 0.821 43 H 0.157 0.843 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -20.977 4.409 -16.259 26.904 hybrid contribution 0.882 1.053 0.653 1.521 sum -20.095 5.463 -15.607 26.023 Atomic orbital electron populations 1.21820 0.86621 1.04979 1.07120 1.30264 1.09356 1.14715 1.13814 0.80391 1.21121 0.77947 1.01090 0.98255 1.45650 1.07597 1.62498 1.26218 1.15985 0.81818 0.79627 0.82254 1.90831 1.68434 1.49471 1.42806 1.47424 1.03918 1.61610 1.22691 1.21847 0.95168 0.95903 0.88103 1.21869 0.97487 0.96912 0.98903 1.18615 0.92247 0.94671 0.91888 1.21568 1.19472 0.96680 1.19193 0.92682 1.25744 0.98650 0.97236 0.97082 1.69988 1.37682 1.19796 1.28144 0.85627 0.78303 0.79492 0.78627 1.20520 1.21150 1.19089 1.21788 0.96153 0.95951 1.00983 1.21489 0.93715 0.96347 0.87070 1.08428 0.75624 0.77594 0.80112 1.30093 1.15599 1.16510 1.16313 1.93508 1.29856 1.87691 1.86426 1.93546 1.79578 1.38147 1.86572 0.90972 0.88803 0.86870 0.91382 0.88952 0.74512 0.88519 0.91212 0.90698 0.93001 0.97949 0.93072 0.90638 0.95624 0.92401 0.91153 0.82076 0.84280 0.82136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 8.94 71.98 0.64 -0.07 16 2 C -0.57 -5.86 2.88 30.59 0.09 -5.78 16 3 H 0.18 0.61 8.14 -2.39 -0.02 0.59 16 4 C 0.14 3.05 5.12 86.38 0.44 3.49 16 5 N -0.76 -21.94 5.07 -478.53 -2.43 -24.37 16 6 C 0.70 27.23 8.30 179.05 1.49 28.72 16 7 O -0.63 -28.56 15.79 -3.99 -0.06 -28.62 16 8 N -0.62 -24.52 2.98 -836.85 -2.49 -27.02 16 9 C 0.11 3.91 6.43 86.36 0.55 4.47 16 10 C -0.11 -4.49 5.30 30.67 0.16 -4.32 16 11 C 0.04 2.20 2.06 -11.51 -0.02 2.17 16 12 C -0.53 -28.85 8.56 25.60 0.22 -28.63 16 13 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 14 C 0.01 0.63 5.30 84.66 0.45 1.08 16 15 N -0.92 -52.83 11.30 21.45 0.24 -52.59 16 16 Si 0.95 43.47 29.54 68.60 2.03 45.50 16 17 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 18 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 20 C -0.11 -5.40 5.15 30.68 0.16 -5.24 16 21 C 0.14 5.98 6.41 86.36 0.55 6.53 16 22 S 2.40 34.17 4.76 -56.49 -0.27 33.90 16 23 C -0.63 -1.37 10.17 113.37 1.15 -0.22 16 24 O -0.98 -21.62 15.82 -127.37 -2.01 -23.64 16 25 O -0.98 -23.00 17.91 -127.37 -2.28 -25.28 16 26 H 0.07 0.54 8.06 -2.39 -0.02 0.52 16 27 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.11 -0.34 6.56 -2.39 -0.02 -0.35 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.41 10.63 3.76 -92.71 -0.35 10.28 16 32 H 0.10 2.79 5.56 -2.39 -0.01 2.77 16 33 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 34 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 38 H 0.08 4.15 6.03 -2.39 -0.01 4.13 16 39 H 0.02 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 41 H 0.07 3.14 7.05 -2.39 -0.02 3.12 16 42 H 0.16 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.16 -0.53 6.87 -2.39 -0.02 -0.55 16 Total: -1.00 -82.53 356.76 -0.74 -83.27 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.65 Total: 16.64 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: 5.89 Total: 2.21 kcal Atomic # 7 Polarization: -99.30 SS G_CDS: -4.68 Total: -103.97 kcal Atomic # 8 Polarization: -73.18 SS G_CDS: -4.36 Total: -77.54 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 16 Polarization: 34.17 SS G_CDS: -0.27 Total: 33.90 kcal Total: -82.53 -0.74 -83.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540992216.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.332 kcal (2) G-P(sol) polarization free energy of solvation -82.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds