Wall clock time and date at job start Fri Apr 10 2020 18:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 S 1.81401 * 109.47229 * 2 1 4 4 O 1.42100 * 110.54231 * 68.37556 * 3 2 1 5 5 O 1.42099 * 110.54219 * 291.62365 * 3 2 1 6 6 N 1.65600 * 104.44782 * 179.97438 * 3 2 1 7 7 C 1.46500 * 119.99856 * 269.99975 * 6 3 2 8 8 C 1.46495 * 120.00104 * 90.00231 * 6 3 2 9 9 C 1.50699 * 109.47449 * 94.99642 * 8 6 3 10 10 O 1.21281 * 119.99691 * 0.02562 * 9 8 6 11 11 N 1.34782 * 120.00351 * 179.97438 * 9 8 6 12 12 C 1.46922 * 120.62953 * 359.72053 * 11 9 8 13 13 C 1.52761 * 109.01023 * 233.58595 * 12 11 9 14 14 C 1.53038 * 109.37909 * 305.58523 * 13 12 11 15 15 C 1.50700 * 109.44646 * 181.25278 * 14 13 12 16 16 H 1.08004 * 119.99898 * 245.38738 * 15 14 13 17 17 C 1.37875 * 119.99852 * 65.39502 * 15 14 13 18 18 N 1.31509 * 120.00078 * 9.57164 * 17 15 14 19 19 Si 1.86800 * 119.99974 * 189.57654 * 17 15 14 20 20 H 1.48504 * 109.47230 * 94.98985 * 19 17 15 21 21 H 1.48498 * 109.47485 * 214.98804 * 19 17 15 22 22 H 1.48502 * 109.47056 * 334.99174 * 19 17 15 23 23 C 1.53048 * 109.53777 * 61.24228 * 14 13 12 24 24 C 1.46926 * 120.62978 * 180.02562 * 11 9 8 25 25 H 1.09000 * 109.46911 * 299.99878 * 1 2 3 26 26 H 1.09005 * 109.46822 * 59.99816 * 1 2 3 27 27 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47260 * 239.99789 * 2 1 3 29 29 H 1.09002 * 109.47108 * 119.99749 * 2 1 3 30 30 H 1.09000 * 109.47400 * 269.99971 * 7 6 3 31 31 H 1.08996 * 109.47623 * 30.00111 * 7 6 3 32 32 H 1.09009 * 109.47253 * 150.00529 * 7 6 3 33 33 H 1.08998 * 109.47140 * 334.99933 * 8 6 3 34 34 H 1.08999 * 109.47286 * 214.99573 * 8 6 3 35 35 H 1.08999 * 109.58528 * 353.42197 * 12 11 9 36 36 H 1.08996 * 109.58732 * 113.84230 * 12 11 9 37 37 H 1.09003 * 109.56408 * 185.55586 * 13 12 11 38 38 H 1.09001 * 109.35765 * 65.49967 * 13 12 11 39 39 H 1.08996 * 109.46680 * 301.22228 * 14 13 12 40 40 H 0.97003 * 120.00048 * 179.97438 * 18 17 15 41 41 H 1.09000 * 109.49687 * 178.67829 * 23 14 13 42 42 H 1.09007 * 109.51862 * 58.60016 * 23 14 13 43 43 H 1.08993 * 109.58680 * 246.15584 * 24 11 9 44 44 H 1.09004 * 109.58441 * 6.44079 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8386 2.3438 -1.2370 6 7 3.7843 1.5652 0.0007 7 6 4.5134 1.5013 1.2698 8 6 4.5145 1.5009 -1.2676 9 6 4.9957 2.8794 -1.6408 10 8 4.7529 3.8227 -0.9181 11 7 5.6966 3.0640 -2.7771 12 6 6.0048 1.9301 -3.6591 13 6 7.5108 1.8914 -3.9121 14 6 7.9705 3.2487 -4.4490 15 6 9.4507 3.2026 -4.7282 16 1 10.1280 3.8173 -4.1538 17 6 9.9402 2.3758 -5.7171 18 7 9.1108 1.7721 -6.5398 19 14 11.7818 2.1132 -5.8880 20 1 12.1764 0.8828 -5.1561 21 1 12.1299 1.9677 -7.3243 22 1 12.5031 3.2801 -5.3195 23 6 7.6812 4.3347 -3.4102 24 6 6.1728 4.4019 -3.1540 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.7843 2.5091 1.5844 31 1 3.8814 1.0411 2.0292 32 1 5.4174 0.9060 1.1399 33 1 3.8543 1.1229 -2.0482 34 1 5.3701 0.8341 -1.1609 35 1 5.6917 1.0010 -3.1827 36 1 5.4807 2.0515 -4.6071 37 1 7.7383 1.1151 -4.6428 38 1 8.0287 1.6753 -2.9777 39 1 7.4341 3.4755 -5.3704 40 1 9.4552 1.1907 -7.2357 41 1 8.0302 5.2975 -3.7835 42 1 8.1977 4.0961 -2.4804 43 1 5.6629 4.7295 -4.0598 44 1 5.9684 5.1037 -2.3454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000541052515.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:41 Heat of formation + Delta-G solvation = -132.001265 kcal Electronic energy + Delta-G solvation = -25912.334365 eV Core-core repulsion = 22183.875586 eV Total energy + Delta-G solvation = -3728.458779 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.14467 -38.58051 -38.22478 -37.04889 -36.68525 -35.29058 -34.02072 -33.16804 -31.86499 -29.76483 -27.89225 -26.33549 -24.87017 -24.45524 -23.80917 -21.66845 -20.19901 -19.61194 -18.74369 -18.63239 -18.08428 -17.52742 -17.28715 -16.67383 -16.44443 -16.30219 -15.57420 -15.13295 -15.03332 -14.84521 -14.64686 -14.48858 -14.21974 -14.03642 -13.85993 -13.74953 -13.40288 -13.30003 -13.22417 -13.19864 -13.18272 -12.76558 -12.64442 -12.51575 -12.45689 -12.38560 -12.16761 -11.94785 -11.56719 -11.47113 -11.21096 -10.89931 -10.82763 -10.38701 -9.94332 -9.52690 -8.10025 -6.17530 -0.80923 1.42001 1.45201 1.53657 1.55566 1.65762 2.13314 2.46099 2.94756 3.10119 3.19662 3.53957 3.60448 3.79343 3.91120 4.12503 4.22318 4.27452 4.37232 4.39582 4.42465 4.50947 4.57982 4.64820 4.72037 4.73771 4.83803 4.86800 4.93688 4.98959 5.05725 5.12894 5.19932 5.27418 5.37981 5.41801 5.56906 5.69227 5.99969 6.07788 6.40506 6.54274 6.91901 7.20802 7.48772 8.97425 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.027781 B = 0.002997 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.637383 B = 9340.127480 C = 9574.575906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.595 4.595 3 S 2.589 3.411 4 O -0.994 6.994 5 O -0.994 6.994 6 N -0.988 5.988 7 C 0.089 3.911 8 C 0.105 3.895 9 C 0.485 3.515 10 O -0.587 6.587 11 N -0.604 5.604 12 C 0.109 3.891 13 C -0.109 4.109 14 C 0.043 3.957 15 C -0.535 4.535 16 H 0.044 0.956 17 C 0.023 3.977 18 N -0.911 5.911 19 Si 0.944 3.056 20 H -0.273 1.273 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.110 4.110 24 C 0.115 3.885 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.111 0.889 28 H 0.163 0.837 29 H 0.164 0.836 30 H 0.030 0.970 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.116 0.884 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.042 0.958 39 H 0.005 0.995 40 H 0.262 0.738 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.063 0.937 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.234 -11.439 12.661 22.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.729 4.729 3 S 2.688 3.312 4 O -0.985 6.985 5 O -0.985 6.985 6 N -0.824 5.824 7 C -0.055 4.055 8 C -0.024 4.024 9 C 0.273 3.727 10 O -0.467 6.467 11 N -0.337 5.337 12 C -0.012 4.012 13 C -0.148 4.148 14 C 0.025 3.975 15 C -0.573 4.573 16 H 0.063 0.937 17 C -0.177 4.177 18 N -0.550 5.550 19 Si 0.770 3.230 20 H -0.199 1.199 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.148 4.148 24 C -0.008 4.008 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.129 0.871 28 H 0.181 0.819 29 H 0.182 0.818 30 H 0.049 0.951 31 H 0.113 0.887 32 H 0.119 0.881 33 H 0.153 0.847 34 H 0.168 0.832 35 H 0.134 0.866 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.061 0.939 39 H 0.023 0.977 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.082 0.918 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.804 -10.224 12.907 22.142 hybrid contribution 1.484 -0.067 -0.548 1.583 sum -13.320 -10.291 12.359 20.883 Atomic orbital electron populations 1.21728 0.90230 1.06759 1.03492 1.30279 1.07141 1.20692 1.14834 1.05636 0.72957 0.79722 0.72894 1.93525 1.83541 1.74971 1.46426 1.93556 1.83515 1.74974 1.46431 1.57042 1.24322 1.89644 1.11345 1.21659 0.98905 1.01875 0.83109 1.21478 1.01127 0.93099 0.86718 1.22026 0.77440 0.93242 0.79951 1.90631 1.58897 1.44943 1.52266 1.48312 1.53144 1.09685 1.22591 1.21935 0.96831 0.88467 0.93997 1.21647 0.93155 1.00397 0.99565 1.18620 0.94629 0.91689 0.92595 1.21484 0.93694 1.24179 1.17979 0.93733 1.25572 1.01194 0.95984 0.94926 1.70038 1.35588 1.31480 1.17875 0.85773 0.81639 0.78502 0.77081 1.19870 1.21157 1.20068 1.21821 0.93687 1.00050 0.99286 1.21517 0.94886 0.84464 0.99897 0.91163 0.91270 0.87085 0.81867 0.81839 0.95132 0.88668 0.88122 0.84695 0.83214 0.86649 0.91572 0.91647 0.93942 0.97652 0.92903 0.92428 0.93673 0.91846 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.92 71.98 0.71 -0.81 16 2 C -0.60 -5.22 6.90 71.98 0.50 -4.72 16 3 S 2.59 57.70 5.32 -56.49 -0.30 57.40 16 4 O -0.99 -29.42 17.09 -127.65 -2.18 -31.60 16 5 O -0.99 -30.72 16.99 -127.65 -2.17 -32.89 16 6 N -0.99 -20.59 2.61 -543.24 -1.42 -22.01 16 7 C 0.09 1.57 10.22 127.77 1.31 2.88 16 8 C 0.10 2.19 4.11 85.63 0.35 2.54 16 9 C 0.49 16.23 7.76 87.66 0.68 16.91 16 10 O -0.59 -24.63 15.83 -3.03 -0.05 -24.68 16 11 N -0.60 -20.73 2.98 -819.84 -2.44 -23.17 16 12 C 0.11 3.38 6.31 86.22 0.54 3.92 16 13 C -0.11 -4.38 5.19 30.53 0.16 -4.22 16 14 C 0.04 2.03 1.93 -11.51 -0.02 2.01 16 15 C -0.54 -28.35 8.48 25.60 0.22 -28.13 16 16 H 0.04 2.39 7.77 -2.91 -0.02 2.36 16 17 C 0.02 1.20 5.19 84.65 0.44 1.64 16 18 N -0.91 -49.49 12.16 21.45 0.26 -49.23 16 19 Si 0.94 41.94 29.55 68.60 2.03 43.96 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 C -0.11 -4.56 5.30 30.66 0.16 -4.40 16 24 C 0.12 4.35 6.43 86.35 0.56 4.91 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.16 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.16 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.09 1.15 7.79 -2.39 -0.02 1.13 16 32 H 0.10 1.18 7.94 -2.38 -0.02 1.16 16 33 H 0.14 2.11 7.42 -2.39 -0.02 2.09 16 34 H 0.15 2.00 7.50 -2.39 -0.02 1.98 16 35 H 0.12 2.41 5.93 -2.39 -0.01 2.39 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.06 2.92 6.87 -2.39 -0.02 2.90 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.01 0.28 8.09 -2.39 -0.02 0.26 16 40 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 41 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.07 2.82 7.00 -2.38 -0.02 2.81 16 Total: -1.00 -80.57 365.78 0.31 -80.26 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: 0.97 Total: 9.41 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 5.60 Total: -7.46 kcal Atomic # 7 Polarization: -90.81 SS G_CDS: -3.60 Total: -94.41 kcal Atomic # 8 Polarization: -84.77 SS G_CDS: -4.40 Total: -89.16 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.96 kcal Atomic # 16 Polarization: 57.70 SS G_CDS: -0.30 Total: 57.40 kcal Total: -80.57 0.31 -80.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541052515.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.742 kcal (2) G-P(sol) polarization free energy of solvation -80.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds