Wall clock time and date at job start Fri Apr 10 2020 18:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47295 * 2 1 4 4 C 1.53010 * 109.46938 * 119.99342 * 2 1 3 5 5 S 1.81399 * 109.46962 * 185.00190 * 4 2 1 6 6 C 1.81398 * 101.92318 * 180.02562 * 5 4 2 7 7 O 1.42108 * 108.58092 * 294.49113 * 5 4 2 8 8 O 1.42099 * 108.57975 * 65.51378 * 5 4 2 9 9 N 1.46495 * 109.47542 * 239.99575 * 2 1 3 10 10 C 1.34778 * 119.99707 * 84.99716 * 9 2 1 11 11 O 1.21582 * 120.00536 * 355.03068 * 10 9 2 12 12 N 1.34777 * 119.99573 * 175.03316 * 10 9 2 13 13 C 1.46931 * 120.62665 * 184.95197 * 12 10 9 14 14 C 1.52763 * 109.00673 * 233.57758 * 13 12 10 15 15 C 1.53039 * 109.38446 * 305.59223 * 14 13 12 16 16 C 1.50695 * 109.44829 * 181.25312 * 15 14 13 17 17 H 1.07999 * 120.00335 * 239.93313 * 16 15 14 18 18 C 1.37877 * 120.00482 * 59.93714 * 16 15 14 19 19 N 1.31523 * 119.99513 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00538 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46846 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46951 * 119.99771 * 20 18 16 23 23 H 1.48493 * 109.47150 * 239.99872 * 20 18 16 24 24 C 1.53037 * 109.54283 * 61.23758 * 15 14 13 25 25 C 1.46926 * 120.63471 * 5.22680 * 12 10 9 26 26 H 1.09003 * 109.47534 * 300.00095 * 1 2 3 27 27 H 1.09002 * 109.47559 * 60.00507 * 1 2 3 28 28 H 1.09006 * 109.47150 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47399 * 305.00256 * 4 2 1 30 30 H 1.09001 * 109.46584 * 65.00531 * 4 2 1 31 31 H 1.09003 * 109.46762 * 59.99760 * 6 5 4 32 32 H 1.08996 * 109.47100 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.46844 * 300.00307 * 6 5 4 34 34 H 0.96998 * 120.00236 * 265.00151 * 9 2 1 35 35 H 1.08994 * 109.58549 * 353.41548 * 13 12 10 36 36 H 1.09000 * 109.58538 * 113.84496 * 13 12 10 37 37 H 1.08999 * 109.56360 * 185.55029 * 14 13 12 38 38 H 1.09004 * 109.38361 * 65.51323 * 14 13 12 39 39 H 1.09003 * 109.46071 * 301.21482 * 15 14 13 40 40 H 0.96998 * 119.99424 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.50061 * 178.68309 * 24 15 14 42 42 H 1.08998 * 109.52469 * 58.60027 * 24 15 14 43 43 H 1.09006 * 109.58655 * 246.16062 * 25 12 10 44 44 H 1.08996 * 109.58363 * 6.44010 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 16 3.8478 -0.5931 1.3258 6 6 4.2235 -1.4989 2.8520 7 8 4.3992 -1.3079 0.2283 8 8 4.1976 0.7717 1.5110 9 7 2.0184 -0.6907 -1.1960 10 6 2.1471 -0.0183 -2.3570 11 8 1.7735 1.1360 -2.4358 12 7 2.6899 -0.6257 -3.4308 13 6 2.9364 0.1243 -4.6700 14 6 2.2735 -0.6082 -5.8351 15 6 2.7639 -2.0575 -5.8690 16 6 2.1345 -2.7731 -7.0362 17 1 1.5166 -3.6426 -6.8672 18 6 2.3473 -2.3180 -8.3202 19 7 3.0995 -1.2588 -8.5261 20 14 1.5677 -3.2055 -9.7672 21 1 0.7734 -4.3581 -9.2713 22 1 0.6770 -2.2700 -10.5000 23 1 2.6320 -3.6934 -10.6805 24 6 2.3716 -2.7612 -4.5678 25 6 3.0408 -2.0517 -3.3865 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6053 -0.2616 2.1370 30 1 1.7516 -1.7714 1.2057 31 1 3.8709 -2.5263 2.7608 32 1 5.3005 -1.4974 3.0196 33 1 3.7246 -1.0168 3.6927 34 1 2.2491 -1.6318 -1.1524 35 1 2.5139 1.1251 -4.5815 36 1 4.0095 0.1928 -4.8483 37 1 2.5327 -0.1144 -6.7716 38 1 1.1915 -0.5934 -5.7033 39 1 3.8485 -2.0714 -5.9766 40 1 3.2495 -0.9389 -9.4294 41 1 2.7007 -3.7997 -4.6023 42 1 1.2889 -2.7265 -4.4470 43 1 4.1227 -2.1642 -3.4579 44 1 2.6895 -2.4855 -2.4503 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000542854072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:44 Heat of formation + Delta-G solvation = -97.879467 kcal Electronic energy + Delta-G solvation = -25996.437007 eV Core-core repulsion = 22269.457861 eV Total energy + Delta-G solvation = -3726.979146 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.04670 -37.34268 -37.21514 -36.25988 -35.81376 -33.53641 -31.80061 -30.79688 -30.10527 -29.59156 -27.97938 -26.06504 -23.19622 -22.48103 -21.53031 -20.18792 -19.26500 -18.86357 -17.65469 -17.04025 -16.70474 -16.34314 -16.18936 -15.83367 -14.94368 -14.63843 -14.49207 -13.99718 -13.77043 -13.62835 -13.44024 -13.21754 -13.12050 -13.00551 -12.69542 -12.53413 -12.32878 -12.28635 -12.21114 -12.08337 -11.72512 -11.42390 -11.29097 -11.06567 -10.91544 -10.78960 -10.58000 -10.35453 -10.00049 -9.72686 -9.49715 -9.11993 -9.06346 -8.83262 -8.31788 -7.81608 -5.97039 -4.03601 -0.38520 2.40100 2.92574 3.30686 3.30930 3.39032 3.42164 3.57748 3.65888 4.09588 4.18584 4.34474 4.37321 4.45002 4.64455 4.88739 5.13845 5.16954 5.20655 5.32603 5.44310 5.55934 5.72309 5.89868 5.96161 6.09010 6.16274 6.34685 6.51001 6.54658 6.61827 6.70704 6.88197 7.05799 7.19145 7.31375 7.54897 7.76709 8.00019 8.12299 8.34883 8.45941 8.97976 9.00034 9.61145 11.08324 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026114 B = 0.003089 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.977963 B = 9061.605162 C = 9301.626854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.176 3.824 3 H 0.102 0.898 4 C -0.626 4.626 5 S 2.418 3.582 6 C -0.661 4.661 7 O -0.922 6.922 8 O -0.934 6.934 9 N -0.757 5.757 10 C 0.709 3.291 11 O -0.598 6.598 12 N -0.613 5.613 13 C 0.125 3.875 14 C -0.123 4.123 15 C 0.049 3.951 16 C -0.512 4.512 17 H 0.054 0.946 18 C 0.061 3.939 19 N -0.889 5.889 20 Si 0.890 3.110 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.124 4.124 25 C 0.114 3.886 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.146 0.854 30 H 0.138 0.862 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.400 0.600 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.037 0.963 39 H 0.028 0.972 40 H 0.260 0.740 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.984 -1.933 24.493 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.069 3.931 3 H 0.120 0.880 4 C -0.755 4.755 5 S 2.599 3.401 6 C -0.810 4.810 7 O -0.919 6.919 8 O -0.931 6.931 9 N -0.418 5.418 10 C 0.410 3.590 11 O -0.478 6.478 12 N -0.349 5.349 13 C 0.004 3.996 14 C -0.162 4.162 15 C 0.030 3.970 16 C -0.550 4.550 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.528 5.528 20 Si 0.718 3.282 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.162 4.162 25 C -0.009 4.009 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.165 0.835 30 H 0.156 0.844 31 H 0.147 0.853 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.238 0.762 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.560 -0.567 23.697 23.710 hybrid contribution -0.889 -1.527 -0.096 1.769 sum -1.449 -2.094 23.601 23.738 Atomic orbital electron populations 1.22153 0.93742 1.02477 1.03159 1.20275 0.95979 0.96597 0.80286 0.87971 1.30731 1.26725 1.10880 1.07136 1.08056 0.78248 0.76418 0.77396 1.30346 1.12491 1.15429 1.22715 1.93634 1.75300 1.74455 1.48556 1.93620 1.81264 1.31940 1.86284 1.45531 1.72950 1.14276 1.09034 1.15782 0.78500 0.84466 0.80209 1.90864 1.56361 1.16765 1.83791 1.47414 1.64128 1.10723 1.12615 1.21706 0.99899 0.95571 0.82473 1.21942 0.98022 0.99046 0.97163 1.18631 0.96673 0.91380 0.90302 1.21224 1.30437 1.12405 0.90940 0.92753 1.24972 0.95169 0.95062 0.98837 1.69864 1.38366 1.23582 1.21017 0.86569 0.79122 0.79722 0.82743 1.19914 1.21105 1.21100 1.22019 0.99453 0.98801 0.95931 1.21721 1.00115 0.80378 0.98698 0.91661 0.90792 0.92229 0.83546 0.84385 0.85334 0.85239 0.85510 0.76168 0.90507 0.92453 0.87837 0.94422 0.95395 0.93038 0.92173 0.93022 0.91596 0.92193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 2 C 0.18 1.92 2.53 -67.93 -0.17 1.75 16 3 H 0.10 1.31 7.65 -51.93 -0.40 0.92 16 4 C -0.63 -3.54 5.33 37.16 0.20 -3.34 16 5 S 2.42 19.19 5.28 -107.50 -0.57 18.62 16 6 C -0.66 -2.30 10.62 101.05 1.07 -1.22 16 7 O -0.92 -10.99 16.90 -57.83 -0.98 -11.96 16 8 O -0.93 -11.56 18.10 -57.83 -1.05 -12.60 16 9 N -0.76 -10.57 4.07 -58.68 -0.24 -10.81 16 10 C 0.71 13.36 8.26 -86.92 -0.72 12.64 16 11 O -0.60 -13.04 15.43 5.29 0.08 -12.96 16 12 N -0.61 -11.90 2.98 -178.76 -0.53 -12.43 16 13 C 0.13 2.67 6.41 -3.93 -0.03 2.64 16 14 C -0.12 -2.94 5.14 -26.83 -0.14 -3.07 16 15 C 0.05 1.18 2.07 -91.73 -0.19 0.99 16 16 C -0.51 -13.82 8.56 -34.44 -0.29 -14.11 16 17 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 19 N -0.89 -25.12 11.30 55.43 0.63 -24.49 16 20 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 25 C 0.11 1.98 6.39 -3.71 -0.02 1.95 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.15 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.14 0.39 8.14 -51.92 -0.42 -0.04 16 31 H 0.13 0.19 8.14 -51.92 -0.42 -0.23 16 32 H 0.13 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.13 0.18 8.14 -51.92 -0.42 -0.24 16 34 H 0.40 4.79 5.69 -40.82 -0.23 4.55 16 35 H 0.08 1.66 6.99 -51.93 -0.36 1.30 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.10 2.74 6.03 -51.93 -0.31 2.42 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.06 0.84 5.64 -51.93 -0.29 0.55 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -37.13 362.33 -9.44 -46.58 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.06 Total: 2.43 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -0.17 Total: -3.99 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.14 Total: -47.72 kcal Atomic # 8 Polarization: -35.59 SS G_CDS: -1.94 Total: -37.53 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: 19.19 SS G_CDS: -0.57 Total: 18.62 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.13 -9.44 -46.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542854072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.304 kcal (2) G-P(sol) polarization free energy of solvation -37.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds