Wall clock time and date at job start Fri Apr 10 2020 18:17:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 109.47295 * 2 1 4 4 C 1.53010 * 109.46938 * 119.99342 * 2 1 3 5 5 S 1.81399 * 109.46962 * 185.00190 * 4 2 1 6 6 C 1.81398 * 101.92318 * 180.02562 * 5 4 2 7 7 O 1.42108 * 108.58092 * 294.49113 * 5 4 2 8 8 O 1.42099 * 108.57975 * 65.51378 * 5 4 2 9 9 N 1.46495 * 109.47542 * 239.99575 * 2 1 3 10 10 C 1.34778 * 119.99707 * 84.99716 * 9 2 1 11 11 O 1.21582 * 120.00536 * 355.03068 * 10 9 2 12 12 N 1.34777 * 119.99573 * 175.03316 * 10 9 2 13 13 C 1.46931 * 120.62665 * 184.95197 * 12 10 9 14 14 C 1.52763 * 109.00673 * 233.57758 * 13 12 10 15 15 C 1.53039 * 109.38446 * 305.59223 * 14 13 12 16 16 C 1.50695 * 109.44829 * 181.25312 * 15 14 13 17 17 H 1.07999 * 120.00335 * 239.93313 * 16 15 14 18 18 C 1.37877 * 120.00482 * 59.93714 * 16 15 14 19 19 N 1.31523 * 119.99513 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00538 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46846 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46951 * 119.99771 * 20 18 16 23 23 H 1.48493 * 109.47150 * 239.99872 * 20 18 16 24 24 C 1.53037 * 109.54283 * 61.23758 * 15 14 13 25 25 C 1.46926 * 120.63471 * 5.22680 * 12 10 9 26 26 H 1.09003 * 109.47534 * 300.00095 * 1 2 3 27 27 H 1.09002 * 109.47559 * 60.00507 * 1 2 3 28 28 H 1.09006 * 109.47150 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47399 * 305.00256 * 4 2 1 30 30 H 1.09001 * 109.46584 * 65.00531 * 4 2 1 31 31 H 1.09003 * 109.46762 * 59.99760 * 6 5 4 32 32 H 1.08996 * 109.47100 * 180.02562 * 6 5 4 33 33 H 1.09004 * 109.46844 * 300.00307 * 6 5 4 34 34 H 0.96998 * 120.00236 * 265.00151 * 9 2 1 35 35 H 1.08994 * 109.58549 * 353.41548 * 13 12 10 36 36 H 1.09000 * 109.58538 * 113.84496 * 13 12 10 37 37 H 1.08999 * 109.56360 * 185.55029 * 14 13 12 38 38 H 1.09004 * 109.38361 * 65.51323 * 14 13 12 39 39 H 1.09003 * 109.46071 * 301.21482 * 15 14 13 40 40 H 0.96998 * 119.99424 * 179.97438 * 19 18 16 41 41 H 1.08993 * 109.50061 * 178.68309 * 24 15 14 42 42 H 1.08998 * 109.52469 * 58.60027 * 24 15 14 43 43 H 1.09006 * 109.58655 * 246.16062 * 25 12 10 44 44 H 1.08996 * 109.58363 * 6.44010 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 1.2494 5 16 3.8478 -0.5931 1.3258 6 6 4.2235 -1.4989 2.8520 7 8 4.3992 -1.3079 0.2283 8 8 4.1976 0.7717 1.5110 9 7 2.0184 -0.6907 -1.1960 10 6 2.1471 -0.0183 -2.3570 11 8 1.7735 1.1360 -2.4358 12 7 2.6899 -0.6257 -3.4308 13 6 2.9364 0.1243 -4.6700 14 6 2.2735 -0.6082 -5.8351 15 6 2.7639 -2.0575 -5.8690 16 6 2.1345 -2.7731 -7.0362 17 1 1.5166 -3.6426 -6.8672 18 6 2.3473 -2.3180 -8.3202 19 7 3.0995 -1.2588 -8.5261 20 14 1.5677 -3.2055 -9.7672 21 1 0.7734 -4.3581 -9.2713 22 1 0.6770 -2.2700 -10.5000 23 1 2.6320 -3.6934 -10.6805 24 6 2.3716 -2.7612 -4.5678 25 6 3.0408 -2.0517 -3.3865 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6053 -0.2616 2.1370 30 1 1.7516 -1.7714 1.2057 31 1 3.8709 -2.5263 2.7608 32 1 5.3005 -1.4974 3.0196 33 1 3.7246 -1.0168 3.6927 34 1 2.2491 -1.6318 -1.1524 35 1 2.5139 1.1251 -4.5815 36 1 4.0095 0.1928 -4.8483 37 1 2.5327 -0.1144 -6.7716 38 1 1.1915 -0.5934 -5.7033 39 1 3.8485 -2.0714 -5.9766 40 1 3.2495 -0.9389 -9.4294 41 1 2.7007 -3.7997 -4.6023 42 1 1.2889 -2.7265 -4.4470 43 1 4.1227 -2.1642 -3.4579 44 1 2.6895 -2.4855 -2.4503 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000542854072.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:43 Heat of formation + Delta-G solvation = -126.465978 kcal Electronic energy + Delta-G solvation = -25997.676611 eV Core-core repulsion = 22269.457861 eV Total energy + Delta-G solvation = -3728.218751 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48389 -38.82244 -37.93348 -37.19773 -36.83193 -35.39122 -33.31275 -32.40708 -31.25793 -30.34044 -28.59749 -27.94729 -24.90780 -24.04130 -22.76657 -21.64566 -20.56680 -19.79629 -19.11406 -18.33067 -17.69947 -17.63519 -16.91515 -16.75437 -16.51998 -16.36677 -15.85597 -15.28173 -14.92008 -14.63752 -14.50854 -14.30029 -14.13781 -13.97353 -13.85804 -13.68892 -13.60491 -13.36640 -13.06070 -13.00334 -12.94695 -12.92607 -12.82554 -12.41465 -12.20440 -12.14140 -11.92660 -11.90972 -11.43465 -11.37776 -11.31475 -10.92713 -10.78457 -10.40352 -10.28690 -9.41095 -8.05945 -6.20200 -0.90578 1.41270 1.43601 1.54111 1.64702 1.93337 2.10954 2.45005 2.76611 2.88759 3.18960 3.20528 3.48165 3.93541 4.07924 4.14391 4.19160 4.22923 4.29815 4.35698 4.43919 4.50154 4.60304 4.68910 4.70319 4.79186 4.91610 4.95077 4.99357 5.02737 5.20113 5.25013 5.29795 5.46484 5.48588 5.50020 5.66656 5.98725 6.04640 6.12801 6.39289 6.91538 6.96321 7.47890 7.52995 8.97878 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.026114 B = 0.003089 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.977963 B = 9061.605162 C = 9301.626854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 H 0.073 0.927 4 C -0.605 4.605 5 S 2.397 3.603 6 C -0.632 4.632 7 O -0.976 6.976 8 O -0.996 6.996 9 N -0.741 5.741 10 C 0.702 3.298 11 O -0.636 6.636 12 N -0.621 5.621 13 C 0.136 3.864 14 C -0.109 4.109 15 C 0.044 3.956 16 C -0.530 4.530 17 H 0.055 0.945 18 C 0.010 3.990 19 N -0.917 5.917 20 Si 0.953 3.047 21 H -0.266 1.266 22 H -0.285 1.285 23 H -0.281 1.281 24 C -0.114 4.114 25 C 0.118 3.882 26 H 0.095 0.905 27 H 0.033 0.967 28 H 0.079 0.921 29 H 0.191 0.809 30 H 0.180 0.820 31 H 0.160 0.840 32 H 0.130 0.870 33 H 0.157 0.843 34 H 0.412 0.588 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.022 0.978 39 H 0.002 0.998 40 H 0.260 0.740 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.068 0.932 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 -4.537 27.801 28.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.053 3.947 3 H 0.091 0.909 4 C -0.735 4.735 5 S 2.586 3.414 6 C -0.785 4.785 7 O -0.973 6.973 8 O -0.993 6.993 9 N -0.402 5.402 10 C 0.403 3.597 11 O -0.518 6.518 12 N -0.356 5.356 13 C 0.013 3.987 14 C -0.148 4.148 15 C 0.026 3.974 16 C -0.568 4.568 17 H 0.073 0.927 18 C -0.188 4.188 19 N -0.557 5.557 20 Si 0.779 3.221 21 H -0.190 1.190 22 H -0.211 1.211 23 H -0.207 1.207 24 C -0.152 4.152 25 C -0.005 4.005 26 H 0.114 0.886 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.208 0.792 30 H 0.198 0.802 31 H 0.178 0.822 32 H 0.149 0.851 33 H 0.175 0.825 34 H 0.252 0.748 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.041 0.959 39 H 0.020 0.980 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.086 0.914 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.742 -3.186 27.015 27.258 hybrid contribution -0.541 -0.731 -1.015 1.363 sum -2.283 -3.917 26.000 26.392 Atomic orbital electron populations 1.22123 0.92542 1.03659 1.02763 1.20564 0.97023 0.95950 0.81157 0.90900 1.30590 1.23871 1.13277 1.05805 1.08122 0.79253 0.75430 0.78636 1.30072 1.13185 1.16169 1.19036 1.93569 1.76902 1.74696 1.52150 1.93551 1.82752 1.35628 1.87408 1.45477 1.71749 1.14640 1.08297 1.16025 0.78190 0.84260 0.81193 1.90832 1.57829 1.18568 1.84554 1.47385 1.64562 1.11499 1.12198 1.21361 0.99365 0.95099 0.82874 1.21693 0.97040 0.99205 0.96901 1.18610 0.94826 0.91749 0.92227 1.21604 1.30469 1.12593 0.92110 0.92708 1.25754 0.95729 0.95794 1.01522 1.70006 1.39432 1.24762 1.21456 0.85578 0.78271 0.78715 0.79494 1.18996 1.21114 1.20687 1.21868 0.99448 0.99382 0.94517 1.21800 1.00176 0.78984 0.99495 0.88613 0.94732 0.90161 0.79153 0.80188 0.82177 0.85098 0.82461 0.74828 0.91425 0.92531 0.90840 0.95889 0.97996 0.93109 0.90618 0.93267 0.91386 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 9.48 71.98 0.68 -1.94 16 2 C 0.16 3.19 2.53 44.99 0.11 3.30 16 3 H 0.07 1.91 7.65 -2.39 -0.02 1.89 16 4 C -0.61 -4.24 5.33 71.99 0.38 -3.85 16 5 S 2.40 33.40 5.28 -56.49 -0.30 33.11 16 6 C -0.63 -1.35 10.62 113.37 1.20 -0.15 16 7 O -0.98 -22.36 16.90 -127.37 -2.15 -24.52 16 8 O -1.00 -24.91 18.10 -127.37 -2.31 -27.21 16 9 N -0.74 -19.76 4.07 -457.82 -1.86 -21.62 16 10 C 0.70 26.80 8.26 179.05 1.48 28.28 16 11 O -0.64 -28.86 15.43 -3.98 -0.06 -28.92 16 12 N -0.62 -24.40 2.98 -837.73 -2.50 -26.89 16 13 C 0.14 6.07 6.41 86.22 0.55 6.62 16 14 C -0.11 -5.47 5.14 30.53 0.16 -5.31 16 15 C 0.04 2.21 2.07 -11.52 -0.02 2.19 16 16 C -0.53 -28.99 8.56 25.60 0.22 -28.77 16 17 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 18 C 0.01 0.58 5.30 84.65 0.45 1.03 16 19 N -0.92 -53.37 11.30 21.45 0.24 -53.13 16 20 Si 0.95 43.87 29.54 68.60 2.03 45.89 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 C -0.11 -4.45 5.30 30.67 0.16 -4.29 16 25 C 0.12 3.95 6.39 86.36 0.55 4.51 16 26 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.03 0.87 8.10 -2.39 -0.02 0.85 16 28 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.19 -0.28 8.14 -2.40 -0.02 -0.30 16 30 H 0.18 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.16 -0.55 8.14 -2.39 -0.02 -0.57 16 32 H 0.13 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.16 -0.51 8.14 -2.39 -0.02 -0.53 16 34 H 0.41 8.76 5.69 -92.71 -0.53 8.24 16 35 H 0.07 3.11 6.99 -2.39 -0.02 3.09 16 36 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.07 4.11 6.03 -2.39 -0.01 4.10 16 38 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 40 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 44 H 0.10 2.55 5.64 -2.39 -0.01 2.53 16 Total: -1.00 -87.79 362.33 -0.51 -88.30 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.47 Total: 13.39 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 5.93 Total: 1.60 kcal Atomic # 7 Polarization: -97.53 SS G_CDS: -4.11 Total: -101.64 kcal Atomic # 8 Polarization: -76.14 SS G_CDS: -4.52 Total: -80.65 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Atomic # 16 Polarization: 33.40 SS G_CDS: -0.30 Total: 33.11 kcal Total: -87.79 -0.51 -88.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000542854072.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.166 kcal (2) G-P(sol) polarization free energy of solvation -87.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds