Wall clock time and date at job start Fri Apr 10 2020 18:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.47023 * 2 1 4 4 C 1.50704 * 109.46724 * 119.99719 * 2 1 3 5 5 H 1.08005 * 119.99322 * 120.00046 * 4 2 1 6 6 C 1.37873 * 120.00125 * 299.99607 * 4 2 1 7 7 N 1.31510 * 120.00140 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99964 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47286 * 89.99892 * 8 6 4 10 10 H 1.48499 * 109.47263 * 210.00356 * 8 6 4 11 11 H 1.48497 * 109.47110 * 330.00042 * 8 6 4 12 12 N 1.46500 * 109.46882 * 239.99603 * 2 1 3 13 13 C 1.46501 * 119.99997 * 300.00234 * 12 2 1 14 14 S 1.65597 * 119.99683 * 120.00136 * 12 2 1 15 15 O 1.42094 * 106.40340 * 336.46018 * 14 12 2 16 16 O 1.42105 * 106.40106 * 203.53978 * 14 12 2 17 17 N 1.65603 * 107.21609 * 90.00243 * 14 12 2 18 18 C 1.46912 * 120.43682 * 269.94609 * 17 14 12 19 19 C 1.53341 * 108.74633 * 235.60466 * 18 17 14 20 20 C 1.52589 * 109.21828 * 307.78814 * 19 18 17 21 21 C 1.53556 * 113.65597 * 189.05425 * 20 19 18 22 22 C 1.54122 * 85.64872 * 136.49595 * 21 20 19 23 23 O 1.43594 * 113.70353 * 285.37877 * 20 19 18 24 24 C 1.52594 * 113.34767 * 57.27010 * 20 19 18 25 25 C 1.46882 * 120.49369 * 90.00036 * 17 14 12 26 26 H 1.09003 * 109.47035 * 300.00443 * 1 2 3 27 27 H 1.08996 * 109.46865 * 60.00160 * 1 2 3 28 28 H 1.08994 * 109.47491 * 180.02562 * 1 2 3 29 29 H 0.97000 * 120.00144 * 179.97438 * 7 6 4 30 30 H 1.09003 * 109.47122 * 269.99882 * 13 12 2 31 31 H 1.08999 * 109.46994 * 30.00062 * 13 12 2 32 32 H 1.09002 * 109.46860 * 150.00334 * 13 12 2 33 33 H 1.09005 * 109.54298 * 115.86061 * 18 17 14 34 34 H 1.08997 * 109.65101 * 355.41710 * 18 17 14 35 35 H 1.09002 * 109.52364 * 187.84855 * 19 18 17 36 36 H 1.09004 * 109.51804 * 67.72686 * 19 18 17 37 37 H 1.09003 * 113.84221 * 250.67204 * 21 20 19 38 38 H 1.08991 * 113.84169 * 22.31286 * 21 20 19 39 39 H 1.09001 * 113.85814 * 91.95595 * 22 21 20 40 40 H 1.09002 * 113.85011 * 223.62704 * 22 21 20 41 41 H 1.08990 * 109.52339 * 62.61221 * 24 20 19 42 42 H 1.09004 * 109.52070 * 182.73291 * 24 20 19 43 43 H 1.09009 * 109.59115 * 4.55046 * 25 17 14 44 44 H 1.09004 * 109.59470 * 244.11827 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2392 2.4828 7 7 0.9429 0.8298 2.6034 8 14 2.3224 -1.1194 4.0080 9 1 3.6305 -0.5440 4.4120 10 1 1.3444 -0.9488 5.1123 11 1 2.4879 -2.5652 3.7124 12 7 2.0184 -0.6907 -1.1961 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1140 -2.2862 15 8 2.6904 1.4971 -2.1193 16 8 2.8227 -0.5648 -3.5259 17 7 4.5438 -0.1045 -1.8180 18 6 5.1842 0.8429 -0.8956 19 6 6.4613 1.3820 -1.5511 20 6 7.3196 0.2099 -2.0178 21 6 8.7211 0.6224 -2.4906 22 6 9.2214 -0.5973 -1.6922 23 8 7.9904 -0.4758 -0.9492 24 6 6.5962 -0.7217 -2.9859 25 6 5.3189 -1.2468 -2.3195 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 0.7083 1.1610 3.4844 30 1 2.4157 -2.7378 -0.9715 31 1 0.6903 -2.3002 -0.9845 32 1 1.6238 -2.2853 -2.5001 33 1 5.4378 0.3323 0.0335 34 1 4.5037 1.6685 -0.6873 35 1 7.0190 1.9766 -0.8276 36 1 6.1970 2.0034 -2.4068 37 1 8.8666 0.5340 -3.5673 38 1 9.0572 1.5789 -2.0906 39 1 9.2920 -1.5114 -2.2817 40 1 10.1149 -0.4000 -1.0998 41 1 6.3359 -0.1747 -3.8919 42 1 7.2462 -1.5590 -3.2400 43 1 4.7262 -1.7985 -3.0494 44 1 5.5826 -1.9023 -1.4895 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554666716.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:54 Heat of formation + Delta-G solvation = -104.703726 kcal Electronic energy + Delta-G solvation = -27128.561600 eV Core-core repulsion = 23401.286531 eV Total energy + Delta-G solvation = -3727.275069 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.88453 -38.42469 -38.04440 -37.89375 -36.91770 -34.51582 -32.39035 -32.22961 -30.91825 -29.98207 -27.31717 -26.98071 -25.72658 -24.58402 -22.76442 -22.45403 -20.60058 -19.64133 -18.78627 -18.47700 -18.31590 -17.27320 -16.89740 -16.81645 -16.59515 -16.15871 -15.78482 -15.52983 -15.17872 -14.94805 -14.62759 -14.51256 -14.13658 -13.68201 -13.61464 -13.46671 -13.37933 -13.22191 -13.10066 -12.93628 -12.86149 -12.79553 -12.65065 -12.63441 -12.25394 -12.23315 -12.15196 -12.12031 -11.87478 -11.47817 -11.26882 -11.15535 -10.50574 -10.46896 -9.99799 -9.63320 -8.09717 -6.24085 -0.34578 1.43278 1.45171 1.53863 1.94514 2.43952 2.51974 2.75915 3.18500 3.32619 3.34546 3.65002 3.75033 3.95355 4.11587 4.13863 4.29307 4.32118 4.37081 4.41017 4.63086 4.69841 4.72273 4.77095 4.79442 4.83157 4.86739 4.93823 4.94642 5.00765 5.02725 5.13076 5.15636 5.21356 5.22428 5.37788 5.54043 5.55549 5.62436 5.78059 5.87035 6.10264 6.29219 6.84694 7.45527 8.94741 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013711 B = 0.005513 C = 0.004471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.606797 B = 5077.493287 C = 6261.105169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.273 3.727 3 H 0.024 0.976 4 C -0.526 4.526 5 H 0.063 0.937 6 C 0.019 3.981 7 N -0.916 5.916 8 Si 0.955 3.045 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.268 1.268 12 N -0.999 5.999 13 C 0.095 3.905 14 S 2.792 3.208 15 O -1.012 7.012 16 O -1.001 7.001 17 N -1.000 6.000 18 C 0.125 3.875 19 C -0.119 4.119 20 C 0.086 3.914 21 C -0.167 4.167 22 C 0.028 3.972 23 O -0.400 6.400 24 C -0.128 4.128 25 C 0.118 3.882 26 H 0.071 0.929 27 H 0.019 0.981 28 H 0.045 0.955 29 H 0.264 0.736 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.988 -3.970 -10.489 18.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.169 3.831 3 H 0.042 0.958 4 C -0.565 4.565 5 H 0.081 0.919 6 C -0.181 4.181 7 N -0.556 5.556 8 Si 0.781 3.219 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.192 1.192 12 N -0.840 5.840 13 C -0.050 4.050 14 S 2.803 3.197 15 O -0.997 6.997 16 O -0.985 6.985 17 N -0.840 5.840 18 C -0.001 4.001 19 C -0.158 4.158 20 C 0.046 3.954 21 C -0.204 4.204 22 C -0.048 4.048 23 O -0.320 6.320 24 C -0.167 4.167 25 C -0.007 4.007 26 H 0.089 0.911 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.107 0.893 42 H 0.122 0.878 43 H 0.114 0.886 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.500 -3.460 -10.861 18.444 hybrid contribution 0.004 -0.300 1.449 1.480 sum 14.504 -3.760 -9.412 17.694 Atomic orbital electron populations 1.21951 0.97839 1.00110 1.00030 1.18386 0.91982 0.91282 0.81448 0.95779 1.21569 1.31351 1.12892 0.90731 0.91921 1.25627 0.95199 0.95617 1.01633 1.70002 1.37348 1.23940 1.24289 0.85610 0.77881 0.79174 0.79250 1.20577 1.21036 1.19222 1.57674 1.65256 1.22501 1.38617 1.21424 1.02114 0.80418 1.01049 1.01355 0.72884 0.72546 0.72938 1.93517 1.84585 1.34369 1.87206 1.93491 1.86422 1.76237 1.42326 1.57941 1.29183 1.36357 1.60568 1.21299 0.95135 0.91563 0.92085 1.21916 0.95017 0.96808 1.02093 1.22371 0.93884 0.91855 0.87255 1.24601 0.92786 1.00204 1.02802 1.24081 0.88803 0.98206 0.93720 1.89729 1.26647 1.80101 1.35480 1.22030 0.96294 1.00482 0.97869 1.21500 0.93244 0.87096 0.98840 0.91075 0.96152 0.93593 0.92709 0.92761 0.90763 0.90338 0.92016 0.90852 0.88999 0.89333 0.88871 0.88178 0.88753 0.88228 0.89318 0.87756 0.88605 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.80 8.95 71.98 0.64 -6.15 16 2 C 0.27 13.70 2.62 44.25 0.12 13.82 16 3 H 0.02 1.37 6.91 -2.39 -0.02 1.36 16 4 C -0.53 -27.42 8.37 25.60 0.21 -27.20 16 5 H 0.06 3.19 7.65 -2.91 -0.02 3.17 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.92 -51.39 11.32 21.45 0.24 -51.15 16 8 Si 0.95 42.46 29.54 68.60 2.03 44.48 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 12 N -1.00 -42.19 3.12 -520.43 -1.62 -43.81 16 13 C 0.10 3.36 9.90 127.77 1.27 4.62 16 14 S 2.79 111.74 6.13 -56.49 -0.35 111.39 16 15 O -1.01 -47.41 15.28 -128.00 -1.96 -49.36 16 16 O -1.00 -39.59 15.33 -128.00 -1.96 -41.55 16 17 N -1.00 -33.61 3.31 -512.65 -1.70 -35.31 16 18 C 0.12 4.20 6.48 86.42 0.56 4.76 16 19 C -0.12 -3.03 5.55 30.57 0.17 -2.86 16 20 C 0.09 1.89 1.04 -11.02 -0.01 1.88 16 21 C -0.17 -2.48 7.52 31.16 0.23 -2.24 16 22 C 0.03 0.44 8.85 72.22 0.64 1.08 16 23 O -0.40 -10.06 12.11 -148.98 -1.80 -11.86 16 24 C -0.13 -2.64 5.46 30.57 0.17 -2.47 16 25 C 0.12 3.17 6.47 86.42 0.56 3.73 16 26 H 0.07 3.79 6.07 -2.39 -0.01 3.77 16 27 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.05 2.06 6.66 -2.39 -0.02 2.04 16 29 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 30 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.07 2.60 6.43 -2.39 -0.02 2.59 16 32 H 0.08 2.45 7.02 -2.39 -0.02 2.44 16 33 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.07 2.77 6.92 -2.39 -0.02 2.76 16 35 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 37 H 0.09 1.02 8.09 -2.39 -0.02 1.00 16 38 H 0.10 1.38 8.08 -2.39 -0.02 1.36 16 39 H 0.09 1.13 7.79 -2.39 -0.02 1.12 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.10 1.61 7.51 -2.38 -0.02 1.59 16 43 H 0.10 2.45 6.92 -2.38 -0.02 2.43 16 44 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -67.12 353.46 -1.13 -68.25 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: 0.99 Total: 18.51 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 5.01 Total: -9.60 kcal Atomic # 7 Polarization: -127.19 SS G_CDS: -3.08 Total: -130.27 kcal Atomic # 8 Polarization: -97.05 SS G_CDS: -5.72 Total: -102.78 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 111.74 SS G_CDS: -0.35 Total: 111.39 kcal Total: -67.12 -1.13 -68.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554666716.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.451 kcal (2) G-P(sol) polarization free energy of solvation -67.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds