Wall clock time and date at job start Fri Apr 10 2020 18:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46877 * 2 1 4 4 N 1.46495 * 109.47158 * 120.00715 * 2 1 3 5 5 S 1.65603 * 119.99629 * 264.99752 * 4 2 1 6 6 C 1.81399 * 104.45067 * 65.00352 * 5 4 2 7 7 O 1.42107 * 104.27542 * 181.06986 * 5 4 2 8 8 O 1.42088 * 104.27968 * 308.92784 * 5 4 2 9 9 C 1.50703 * 109.46718 * 240.00639 * 2 1 3 10 10 O 1.21280 * 119.99833 * 264.56941 * 9 2 1 11 11 N 1.34771 * 120.00399 * 84.57399 * 9 2 1 12 12 C 1.46928 * 120.62935 * 4.36441 * 11 9 2 13 13 C 1.52759 * 109.01052 * 233.58750 * 12 11 9 14 14 C 1.53040 * 109.38241 * 305.58574 * 13 12 11 15 15 C 1.52992 * 109.44764 * 181.25344 * 14 13 12 16 16 C 1.50701 * 109.47346 * 64.94229 * 15 14 13 17 17 H 1.07999 * 119.99722 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00248 * 180.02562 * 16 15 14 19 19 N 1.31509 * 119.99941 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99899 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47339 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47197 * 119.99971 * 20 18 16 23 23 H 1.48502 * 109.47031 * 239.99471 * 20 18 16 24 24 C 1.53042 * 109.53361 * 61.24023 * 14 13 12 25 25 C 1.46922 * 120.63505 * 184.64816 * 11 9 2 26 26 H 1.08998 * 109.47188 * 295.01307 * 1 2 3 27 27 H 1.09001 * 109.47095 * 55.01542 * 1 2 3 28 28 H 1.08999 * 109.47180 * 175.01450 * 1 2 3 29 29 H 0.96997 * 120.00697 * 84.99833 * 4 2 1 30 30 H 1.09003 * 109.47218 * 59.99803 * 6 5 4 31 31 H 1.09001 * 109.47645 * 179.97438 * 6 5 4 32 32 H 1.09003 * 109.46829 * 299.99616 * 6 5 4 33 33 H 1.09004 * 109.58646 * 353.42732 * 12 11 9 34 34 H 1.09004 * 109.58503 * 113.84380 * 12 11 9 35 35 H 1.09000 * 109.56112 * 185.55340 * 13 12 11 36 36 H 1.08992 * 109.35830 * 65.50067 * 13 12 11 37 37 H 1.08998 * 109.46093 * 301.22014 * 14 13 12 38 38 H 1.09003 * 109.47024 * 184.94056 * 15 14 13 39 39 H 1.09000 * 109.47688 * 304.93853 * 15 14 13 40 40 H 0.97002 * 120.00150 * 180.02562 * 19 18 16 41 41 H 1.09005 * 109.49548 * 178.67779 * 24 14 13 42 42 H 1.09001 * 109.49948 * 58.58643 * 24 14 13 43 43 H 1.08998 * 109.59040 * 246.15472 * 25 11 9 44 44 H 1.09002 * 109.58214 * 6.43833 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1960 5 16 2.4122 0.1770 2.5504 6 6 0.8408 0.8986 3.0986 7 8 2.8607 -0.8032 3.4765 8 8 3.2875 1.1904 2.0751 9 6 2.0323 -0.7103 -1.2306 10 8 2.3281 -1.8851 -1.1743 11 7 2.1528 -0.0401 -2.3936 12 6 1.8901 1.4042 -2.4560 13 6 0.8637 1.6763 -3.5542 14 6 1.3551 1.0691 -4.8703 15 6 0.3431 1.3677 -5.9782 16 6 0.2866 2.8541 -6.2197 17 1 0.9099 3.5194 -5.6406 18 6 -0.5615 3.3649 -7.1793 19 7 -1.3208 2.5549 -7.8842 20 14 -0.6309 5.2074 -7.4791 21 1 0.3146 5.8941 -6.5628 22 1 -0.2537 5.4945 -8.8864 23 1 -2.0094 5.6985 -7.2263 24 6 1.5044 -0.4456 -4.7107 25 6 2.5435 -0.7407 -3.6245 26 1 -0.3633 0.4345 0.9313 27 1 -0.3633 0.5892 -0.8420 28 1 -0.3633 -1.0238 -0.0893 29 1 2.1110 -1.6563 1.1947 30 1 0.1316 0.1006 3.3185 31 1 1.0077 1.4936 3.9965 32 1 0.4387 1.5351 2.3102 33 1 1.4976 1.7459 -1.4981 34 1 2.8147 1.9343 -2.6843 35 1 0.7353 2.7519 -3.6753 36 1 -0.0890 1.2244 -3.2783 37 1 2.3197 1.5035 -5.1328 38 1 0.6478 0.8620 -6.8945 39 1 -0.6417 1.0109 -5.6767 40 1 -1.9172 2.9142 -8.5595 41 1 1.8319 -0.8804 -5.6552 42 1 0.5456 -0.8776 -4.4240 43 1 3.5224 -0.3892 -3.9501 44 1 2.5843 -1.8137 -3.4368 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572123658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:05 Heat of formation + Delta-G solvation = -147.203240 kcal Electronic energy + Delta-G solvation = -25697.960501 eV Core-core repulsion = 21968.842515 eV Total energy + Delta-G solvation = -3729.117986 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.46301 -38.90891 -38.18586 -37.03358 -36.57222 -35.70164 -33.99158 -32.23484 -30.87894 -30.23446 -29.70974 -26.67927 -25.10404 -24.10163 -23.13629 -21.34448 -20.58655 -19.99425 -19.09567 -18.37743 -17.86250 -17.60558 -17.19399 -16.54242 -16.49669 -16.30097 -15.72090 -15.17937 -15.15037 -14.73358 -14.61978 -14.40550 -14.30157 -13.93589 -13.83544 -13.79110 -13.35188 -13.23159 -13.16296 -13.11920 -12.98867 -12.86444 -12.67427 -12.64088 -12.49832 -12.28543 -12.07949 -11.96016 -11.70573 -11.33304 -11.16267 -10.84419 -10.80778 -10.50503 -10.48481 -9.63685 -8.13262 -6.22265 -0.69923 1.43458 1.44466 1.45510 1.56903 1.65911 2.04684 2.45702 2.88909 3.21137 3.24521 3.31689 3.75265 3.99019 4.00542 4.03463 4.08022 4.12879 4.19646 4.22945 4.38264 4.43627 4.58569 4.69743 4.71379 4.82273 4.90257 4.92588 5.01170 5.02339 5.15260 5.27226 5.34508 5.36103 5.44983 5.57836 5.62619 5.86284 5.93661 5.94629 6.32419 6.39463 6.95418 7.04553 7.46798 8.98802 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.002966 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.508561 B = 9439.431934 C =10175.072431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.125 3.875 3 H 0.132 0.868 4 N -1.107 6.107 5 S 2.616 3.384 6 C -0.650 4.650 7 O -0.999 6.999 8 O -0.997 6.997 9 C 0.510 3.490 10 O -0.576 6.576 11 N -0.603 5.603 12 C 0.101 3.899 13 C -0.113 4.113 14 C -0.075 4.075 15 C 0.033 3.967 16 C -0.523 4.523 17 H 0.069 0.931 18 C -0.003 4.003 19 N -0.938 5.938 20 Si 0.958 3.042 21 H -0.256 1.256 22 H -0.287 1.287 23 H -0.282 1.282 24 C -0.120 4.120 25 C 0.118 3.882 26 H 0.108 0.892 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.423 0.577 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.155 0.845 33 H 0.114 0.886 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.059 0.941 38 H -0.018 1.018 39 H -0.012 1.012 40 H 0.260 0.740 41 H 0.068 0.932 42 H 0.051 0.949 43 H 0.077 0.923 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.388 -1.679 21.811 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.014 3.986 3 H 0.150 0.850 4 N -0.866 5.866 5 S 2.713 3.287 6 C -0.805 4.805 7 O -0.990 6.990 8 O -0.987 6.987 9 C 0.297 3.703 10 O -0.456 6.456 11 N -0.335 5.335 12 C -0.021 4.021 13 C -0.151 4.151 14 C -0.094 4.094 15 C -0.004 4.004 16 C -0.561 4.561 17 H 0.087 0.913 18 C -0.200 4.200 19 N -0.579 5.579 20 Si 0.783 3.217 21 H -0.180 1.180 22 H -0.213 1.213 23 H -0.208 1.208 24 C -0.158 4.158 25 C -0.005 4.005 26 H 0.127 0.873 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.259 0.741 30 H 0.173 0.827 31 H 0.170 0.830 32 H 0.173 0.827 33 H 0.132 0.868 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.001 0.999 39 H 0.007 0.993 40 H 0.069 0.931 41 H 0.087 0.913 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.322 -2.024 22.074 22.414 hybrid contribution -0.836 0.187 -1.179 1.458 sum 2.486 -1.837 20.894 21.122 Atomic orbital electron populations 1.22465 0.90442 1.04542 1.05880 1.20924 0.97271 0.97415 0.82969 0.85018 1.55428 1.84205 1.20741 1.26197 1.04497 0.78147 0.73537 0.72498 1.30442 1.20219 1.15228 1.14601 1.93574 1.81517 1.60385 1.63474 1.93574 1.64001 1.61302 1.79832 1.21074 0.76979 0.87003 0.85228 1.90644 1.51944 1.17787 1.85221 1.48239 1.66863 1.10206 1.08198 1.22066 1.00119 0.78777 1.01093 1.21727 0.97932 1.02044 0.93434 1.21053 0.98845 0.93803 0.95691 1.19015 0.93397 0.95252 0.92758 1.21709 1.21983 0.93662 1.18728 0.91320 1.25940 0.95549 1.02471 0.96067 1.70115 1.26682 1.36631 1.24487 0.85501 0.78046 0.80207 0.77908 1.17961 1.21322 1.20804 1.21892 0.98711 0.96984 0.98208 1.21568 0.97779 0.97808 0.83335 0.87350 0.89664 0.91596 0.74095 0.82657 0.83043 0.82655 0.86760 0.89935 0.90174 0.92406 0.92227 0.99922 0.99317 0.93150 0.91341 0.92992 0.90496 0.90126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 9.39 71.98 0.68 -1.32 16 2 C 0.13 2.10 2.37 44.25 0.11 2.20 16 3 H 0.13 1.72 5.65 -2.39 -0.01 1.70 16 4 N -1.11 -18.21 5.30 -172.52 -0.91 -19.12 16 5 S 2.62 38.83 6.08 -56.49 -0.34 38.49 16 6 C -0.65 -2.19 9.92 113.37 1.12 -1.06 16 7 O -1.00 -22.92 18.08 -127.65 -2.31 -25.23 16 8 O -1.00 -22.35 17.39 -127.65 -2.22 -24.57 16 9 C 0.51 12.98 6.91 87.66 0.61 13.59 16 10 O -0.58 -18.54 15.53 -3.03 -0.05 -18.59 16 11 N -0.60 -15.20 2.98 -819.75 -2.44 -17.64 16 12 C 0.10 2.19 6.20 86.22 0.53 2.72 16 13 C -0.11 -3.30 5.17 30.53 0.16 -3.14 16 14 C -0.08 -2.70 2.10 -10.77 -0.02 -2.72 16 15 C 0.03 1.60 4.45 29.85 0.13 1.73 16 16 C -0.52 -27.25 8.39 25.60 0.21 -27.04 16 17 H 0.07 3.35 7.05 -2.91 -0.02 3.33 16 18 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 19 N -0.94 -55.45 13.29 21.45 0.28 -55.16 16 20 Si 0.96 42.09 29.54 68.60 2.03 44.12 16 21 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 22 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 24 C -0.12 -3.78 5.36 30.67 0.16 -3.61 16 25 C 0.12 3.23 6.42 86.36 0.55 3.78 16 26 H 0.11 0.42 5.73 -2.39 -0.01 0.41 16 27 H 0.08 1.00 7.79 -2.39 -0.02 0.98 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.42 7.76 8.07 -96.75 -0.78 6.98 16 30 H 0.16 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.15 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.16 -0.07 6.88 -2.39 -0.02 -0.09 16 33 H 0.11 1.66 5.12 -2.39 -0.01 1.65 16 34 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.08 2.48 6.91 -2.39 -0.02 2.46 16 36 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 38 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 40 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 41 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 42 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.08 2.33 7.03 -2.39 -0.02 2.31 16 Total: -1.00 -80.37 359.73 -1.03 -81.40 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 0.23 Total: 10.89 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: 4.71 Total: -14.59 kcal Atomic # 7 Polarization: -88.85 SS G_CDS: -3.07 Total: -91.93 kcal Atomic # 8 Polarization: -63.81 SS G_CDS: -4.57 Total: -68.38 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 38.83 SS G_CDS: -0.34 Total: 38.49 kcal Total: -80.37 -1.03 -81.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572123658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.802 kcal (2) G-P(sol) polarization free energy of solvation -80.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds