Wall clock time and date at job start Fri Apr 10 2020 18:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08998 * 109.46783 * 2 1 4 4 C 1.50701 * 109.47037 * 239.99452 * 2 1 3 5 5 H 1.07996 * 119.99653 * 240.00148 * 4 2 1 6 6 C 1.37878 * 119.99753 * 60.00730 * 4 2 1 7 7 N 1.31509 * 120.00283 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99538 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47271 * 59.99941 * 8 6 4 10 10 H 1.48508 * 109.46670 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47246 * 299.99210 * 8 6 4 12 12 N 1.46501 * 109.46634 * 119.99893 * 2 1 3 13 13 C 1.46493 * 120.00353 * 59.99770 * 12 2 1 14 14 S 1.65605 * 119.99766 * 240.00103 * 12 2 1 15 15 O 1.42100 * 106.39972 * 336.46007 * 14 12 2 16 16 O 1.42096 * 106.40300 * 203.54174 * 14 12 2 17 17 N 1.65600 * 107.21939 * 90.00004 * 14 12 2 18 18 C 1.47677 * 134.45281 * 90.00084 * 17 14 12 19 19 C 1.53408 * 85.95588 * 204.28796 * 18 17 14 20 20 C 1.47684 * 134.45025 * 270.05033 * 17 14 12 21 21 C 1.52743 * 113.70535 * 91.24974 * 19 18 17 22 22 C 1.53284 * 108.99407 * 78.32507 * 21 19 18 23 23 O 1.43161 * 109.17435 * 55.11551 * 22 21 19 24 24 C 1.42905 * 114.44118 * 297.01367 * 23 22 21 25 25 C 1.52747 * 113.69969 * 222.09193 * 19 18 17 26 26 H 1.08997 * 109.47191 * 300.00759 * 1 2 3 27 27 H 1.09006 * 109.46699 * 60.00671 * 1 2 3 28 28 H 1.08998 * 109.46783 * 179.97438 * 1 2 3 29 29 H 0.96998 * 120.00541 * 180.02562 * 7 6 4 30 30 H 1.08995 * 109.47799 * 270.00105 * 13 12 2 31 31 H 1.09006 * 109.46935 * 30.00591 * 13 12 2 32 32 H 1.09001 * 109.47328 * 149.99829 * 13 12 2 33 33 H 1.08998 * 113.79865 * 90.02698 * 18 17 14 34 34 H 1.09000 * 113.79790 * 318.55095 * 18 17 14 35 35 H 1.08994 * 113.79674 * 41.44459 * 20 17 14 36 36 H 1.09007 * 113.79502 * 269.96747 * 20 17 14 37 37 H 1.09002 * 109.56699 * 198.20982 * 21 19 18 38 38 H 1.09004 * 109.56708 * 318.44365 * 21 19 18 39 39 H 1.08995 * 109.50035 * 175.17395 * 22 21 19 40 40 H 1.08999 * 109.50008 * 295.27851 * 22 21 19 41 41 H 1.08997 * 109.49960 * 303.10669 * 24 23 22 42 42 H 1.09003 * 109.52174 * 183.03171 * 24 23 22 43 43 H 1.08990 * 109.57012 * 41.43960 * 25 19 18 44 44 H 1.09006 * 109.56164 * 161.67478 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9430 0.8296 -2.6035 8 14 2.3227 -1.1198 -4.0078 9 1 1.8281 -2.5200 -4.0080 10 1 1.8271 -0.4202 -5.2204 11 1 3.8076 -1.1192 -4.0076 12 7 2.0183 -0.6906 1.1962 13 6 1.6643 -2.0931 1.4282 14 16 2.9703 0.1142 2.2864 15 8 3.5794 1.1830 1.5749 16 8 3.7117 -0.8788 2.9816 17 7 1.9606 0.8092 3.3998 18 6 1.3858 0.3736 4.6885 19 6 0.2713 1.3907 4.4112 20 6 1.2734 2.1125 3.5014 21 6 -0.9245 0.8030 3.6644 22 6 -1.7935 0.0179 4.6534 23 8 -2.1556 0.8731 5.7429 24 6 -1.0512 1.3403 6.5202 25 6 -0.1394 2.2015 5.6389 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7084 1.1608 -3.4844 30 1 0.7375 -2.1443 1.9994 31 1 1.5295 -2.5969 0.4709 32 1 2.4627 -2.5818 1.9866 33 1 2.0030 0.6220 5.5518 34 1 1.0456 -0.6619 4.6908 35 1 0.8441 2.4578 2.5610 36 1 1.8573 2.8789 4.0112 37 1 -1.5110 1.6087 3.2228 38 1 -0.5718 0.1351 2.8785 39 1 -2.6932 -0.3331 4.1481 40 1 -1.2321 -0.8359 5.0328 41 1 -0.4890 0.4884 6.9023 42 1 -1.4197 1.9369 7.3548 43 1 0.7492 2.4867 6.2019 44 1 -0.6742 3.0971 5.3226 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589932158.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:20 Heat of formation + Delta-G solvation = -110.437194 kcal Electronic energy + Delta-G solvation = -27123.210058 eV Core-core repulsion = 23395.686367 eV Total energy + Delta-G solvation = -3727.523690 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.54603 -38.50786 -38.35056 -37.89907 -36.92444 -34.54084 -32.91659 -32.05095 -30.93275 -27.65944 -27.31378 -27.17829 -26.90345 -24.55598 -23.44319 -22.49077 -19.92205 -19.38962 -18.82431 -18.64509 -18.08983 -17.26402 -16.89169 -16.85570 -16.54081 -16.28787 -15.59429 -15.54748 -15.21232 -14.93581 -14.48103 -14.35837 -14.06188 -13.90593 -13.79870 -13.49998 -13.27954 -13.23372 -13.09110 -13.03887 -13.00403 -12.73820 -12.65963 -12.52228 -12.23628 -12.17247 -12.11010 -11.92884 -11.67454 -11.51138 -11.19272 -10.98252 -10.52139 -10.34942 -10.02233 -9.67132 -8.13509 -6.27235 -0.43082 1.41143 1.43182 1.50094 1.98953 2.40389 2.53420 3.06337 3.13631 3.14739 3.37282 3.61252 3.75122 4.03597 4.13759 4.16735 4.35307 4.46833 4.54851 4.55575 4.62601 4.69863 4.71179 4.74895 4.77273 4.81890 4.88817 4.91291 4.99512 5.03186 5.09981 5.15073 5.21218 5.25738 5.29139 5.39304 5.57729 5.62972 5.73895 5.86640 6.13756 6.28578 6.38533 6.79751 7.41529 8.90336 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018987 B = 0.004574 C = 0.004144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.312796 B = 6120.183806 C = 6755.346605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.277 3.723 3 H 0.019 0.981 4 C -0.542 4.542 5 H 0.055 0.945 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.265 1.265 10 H -0.281 1.281 11 H -0.280 1.280 12 N -0.994 5.994 13 C 0.095 3.905 14 S 2.804 3.196 15 O -1.019 7.019 16 O -1.011 7.011 17 N -1.049 6.049 18 C 0.132 3.868 19 C -0.077 4.077 20 C 0.129 3.871 21 C -0.134 4.134 22 C 0.067 3.933 23 O -0.403 6.403 24 C 0.058 3.942 25 C -0.135 4.135 26 H 0.038 0.962 27 H 0.064 0.936 28 H 0.040 0.960 29 H 0.265 0.735 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.109 0.891 43 H 0.098 0.902 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.636 0.169 18.717 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.173 3.827 3 H 0.037 0.963 4 C -0.581 4.581 5 H 0.074 0.926 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.780 3.220 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.835 5.835 13 C -0.050 4.050 14 S 2.818 3.182 15 O -1.003 7.003 16 O -0.995 6.995 17 N -0.891 5.891 18 C 0.008 3.992 19 C -0.080 4.080 20 C 0.004 3.996 21 C -0.172 4.172 22 C -0.010 4.010 23 O -0.322 6.322 24 C -0.018 4.018 25 C -0.173 4.173 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.127 0.873 43 H 0.116 0.884 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.772 0.260 18.435 19.320 hybrid contribution 0.585 -0.332 -1.593 1.729 sum -5.187 -0.072 16.843 17.624 Atomic orbital electron populations 1.21899 0.96510 1.00100 1.00457 1.18354 0.92409 0.90982 0.80996 0.96347 1.21627 1.31821 1.13124 0.91569 0.92631 1.25614 0.95160 0.95692 1.01579 1.69960 1.37123 1.23597 1.24425 0.85675 0.78391 0.79121 0.78828 1.19024 1.20591 1.20626 1.57584 1.70060 1.20948 1.34922 1.21431 1.00373 0.80656 1.02570 1.00780 0.73195 0.72147 0.72111 1.93523 1.75388 1.57642 1.73778 1.93477 1.69963 1.61156 1.74871 1.60553 1.66738 1.27887 1.33968 1.23061 0.91908 0.99813 0.84429 1.22094 0.93581 0.96076 0.96225 1.22961 0.91282 0.85501 0.99840 1.21980 0.95685 1.01028 0.98520 1.22652 0.99551 0.91813 0.86978 1.87917 1.33439 1.67168 1.43684 1.22771 0.87913 0.97793 0.93348 1.22138 1.01363 0.98779 0.95032 0.94320 0.91725 0.94085 0.92604 0.91446 0.90960 0.91357 0.87646 0.89623 0.91441 0.87929 0.90960 0.91189 0.88281 0.92079 0.92032 0.87322 0.88367 0.90362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.75 8.97 71.99 0.65 -5.10 16 2 C 0.28 13.68 2.62 44.25 0.12 13.79 16 3 H 0.02 1.06 6.91 -2.39 -0.02 1.04 16 4 C -0.54 -29.57 7.99 25.60 0.20 -29.36 16 5 H 0.06 3.02 7.33 -2.91 -0.02 2.99 16 6 C 0.02 1.07 5.30 84.66 0.45 1.52 16 7 N -0.91 -51.32 11.32 21.45 0.24 -51.07 16 8 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 9 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 N -0.99 -41.34 3.12 -520.44 -1.62 -42.96 16 13 C 0.10 3.29 9.65 127.77 1.23 4.52 16 14 S 2.80 113.66 6.65 -56.49 -0.38 113.29 16 15 O -1.02 -50.60 16.67 -128.00 -2.13 -52.74 16 16 O -1.01 -42.64 16.71 -128.00 -2.14 -44.78 16 17 N -1.05 -30.84 4.03 -536.60 -2.16 -33.01 16 18 C 0.13 2.68 7.95 86.29 0.69 3.36 16 19 C -0.08 -1.44 0.79 -52.05 -0.04 -1.49 16 20 C 0.13 3.16 8.11 86.28 0.70 3.86 16 21 C -0.13 -2.78 5.26 30.60 0.16 -2.61 16 22 C 0.07 1.17 6.82 72.08 0.49 1.66 16 23 O -0.40 -7.53 10.72 -148.98 -1.60 -9.13 16 24 C 0.06 0.74 6.80 72.08 0.49 1.23 16 25 C -0.13 -1.76 5.34 30.61 0.16 -1.60 16 26 H 0.04 1.45 6.77 -2.39 -0.02 1.44 16 27 H 0.06 3.23 6.07 -2.38 -0.01 3.22 16 28 H 0.04 1.69 7.67 -2.39 -0.02 1.68 16 29 H 0.26 14.19 8.31 -92.71 -0.77 13.41 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 2.65 7.02 -2.38 -0.02 2.63 16 32 H 0.07 2.24 7.02 -2.39 -0.02 2.22 16 33 H 0.11 1.65 8.01 -2.39 -0.02 1.63 16 34 H 0.09 1.59 7.75 -2.39 -0.02 1.57 16 35 H 0.07 1.87 8.09 -2.39 -0.02 1.85 16 36 H 0.10 2.06 8.09 -2.38 -0.02 2.05 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.71 6.64 -2.38 -0.02 1.69 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.06 0.93 7.80 -2.39 -0.02 0.92 16 41 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.10 0.92 8.03 -2.39 -0.02 0.90 16 44 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -71.38 356.06 -1.48 -72.86 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.98 Total: 12.27 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 5.30 Total: -10.22 kcal Atomic # 7 Polarization: -123.49 SS G_CDS: -3.54 Total: -127.04 kcal Atomic # 8 Polarization: -100.78 SS G_CDS: -5.87 Total: -106.65 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 113.66 SS G_CDS: -0.38 Total: 113.29 kcal Total: -71.38 -1.48 -72.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589932158.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.573 kcal (2) G-P(sol) polarization free energy of solvation -71.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds