Wall clock time and date at job start Fri Apr 10 2020 18:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46980 * 2 1 4 4 C 1.53002 * 109.47364 * 119.99672 * 2 1 3 5 5 H 1.08997 * 109.47622 * 182.70306 * 4 2 1 6 6 N 1.46498 * 109.47110 * 302.70899 * 4 2 1 7 7 S 1.65604 * 120.00169 * 216.27162 * 6 4 2 8 8 O 1.42103 * 104.27250 * 307.17287 * 7 6 4 9 9 O 1.42096 * 104.27869 * 179.31477 * 7 6 4 10 10 C 1.81397 * 104.44971 * 63.24118 * 7 6 4 11 11 C 1.52999 * 117.51837 * 106.22979 * 10 7 6 12 12 C 1.52994 * 117.49802 * 174.86128 * 10 7 6 13 13 C 1.50706 * 109.46618 * 62.70404 * 4 2 1 14 14 O 1.21281 * 120.00130 * 239.99872 * 13 4 2 15 15 N 1.34775 * 120.00030 * 60.00777 * 13 4 2 16 16 C 1.46493 * 120.00020 * 179.97438 * 15 13 4 17 17 H 1.09001 * 109.47164 * 324.99399 * 16 15 13 18 18 C 1.52999 * 109.47303 * 84.99781 * 16 15 13 19 19 C 1.50703 * 109.47028 * 204.99548 * 16 15 13 20 20 H 1.07998 * 119.99835 * 0.02562 * 19 16 15 21 21 C 1.37877 * 119.99882 * 179.97438 * 19 16 15 22 22 N 1.31520 * 119.99767 * 179.97438 * 21 19 16 23 23 Si 1.86796 * 120.00060 * 0.02562 * 21 19 16 24 24 H 1.48510 * 109.47247 * 90.00044 * 23 21 19 25 25 H 1.48497 * 109.47209 * 209.99618 * 23 21 19 26 26 H 1.48500 * 109.47443 * 330.00117 * 23 21 19 27 27 H 1.08996 * 109.47010 * 300.00180 * 1 2 3 28 28 H 1.08995 * 109.46855 * 60.00213 * 1 2 3 29 29 H 1.09005 * 109.46532 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47720 * 239.99997 * 2 1 3 31 31 H 1.08992 * 109.47171 * 304.17501 * 3 2 1 32 32 H 1.09003 * 109.47076 * 64.17366 * 3 2 1 33 33 H 1.09001 * 109.47582 * 184.17470 * 3 2 1 34 34 H 0.97004 * 120.00048 * 36.27121 * 6 4 2 35 35 H 1.09004 * 115.54943 * 320.52764 * 10 7 6 36 36 H 1.08996 * 117.50068 * 214.97128 * 11 10 7 37 37 H 1.09002 * 117.49610 * 359.97438 * 11 10 7 38 38 H 1.08998 * 117.50230 * 359.97423 * 12 10 7 39 39 H 1.09004 * 117.50118 * 145.00074 * 12 10 7 40 40 H 0.96999 * 119.99693 * 359.97438 * 15 13 4 41 41 H 1.09001 * 109.47322 * 59.99714 * 18 16 15 42 42 H 1.09003 * 109.47181 * 180.02562 * 18 16 15 43 43 H 1.09007 * 109.46942 * 299.99838 * 18 16 15 44 44 H 0.96997 * 119.99342 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 3.1290 -0.6794 1.2739 6 7 1.4992 -0.0692 2.4445 7 16 2.4263 0.0554 3.8110 8 8 2.8587 -1.2746 4.0635 9 8 1.5962 0.7440 4.7362 10 6 3.8265 1.0964 3.3147 11 6 3.8511 2.5385 3.8254 12 6 4.8223 1.5061 4.4016 13 6 1.5932 -2.1601 1.2162 14 8 0.8920 -2.5979 2.1037 15 7 1.9728 -2.9604 0.2005 16 6 1.5389 -4.3593 0.1686 17 1 1.4946 -4.7492 1.1855 18 6 0.1527 -4.4488 -0.4728 19 6 2.5191 -5.1710 -0.6384 20 1 3.3795 -4.6928 -1.0827 21 6 2.3180 -6.5244 -0.8086 22 7 3.1733 -7.2328 -1.5133 23 14 0.8303 -7.3516 -0.0395 24 1 -0.3058 -7.3148 -0.9953 25 1 1.1602 -8.7631 0.2829 26 1 0.4534 -6.6346 1.2051 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6169 1.9774 -0.8501 32 1 1.7390 1.9343 0.9250 33 1 3.1274 1.4435 -0.0748 34 1 0.5980 0.2895 2.4355 35 1 4.2205 0.9094 2.3157 36 1 4.2613 3.3002 3.1624 37 1 3.0256 2.8620 4.4594 38 1 4.6359 1.1505 5.4149 39 1 5.8714 1.5888 4.1177 40 1 2.5334 -2.6102 -0.5094 41 1 0.1970 -4.0588 -1.4897 42 1 -0.1704 -5.4896 -0.4961 43 1 -0.5563 -3.8616 0.1109 44 1 3.0320 -8.1849 -1.6327 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590434903.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:27 Heat of formation + Delta-G solvation = -80.772710 kcal Electronic energy + Delta-G solvation = -26376.116565 eV Core-core repulsion = 22649.879223 eV Total energy + Delta-G solvation = -3726.237342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.72225 -37.49246 -36.96764 -36.73450 -35.91509 -34.93320 -32.71116 -32.24597 -30.06519 -27.37736 -26.74483 -25.13503 -23.85397 -22.99622 -21.66898 -20.59760 -19.52886 -19.23607 -18.22618 -17.64641 -16.90586 -16.26816 -16.04468 -15.55608 -15.35081 -14.89917 -14.78567 -14.39782 -14.16627 -13.76317 -13.25024 -13.24810 -12.77202 -12.62252 -12.32922 -12.24575 -12.17628 -12.13560 -11.97638 -11.91648 -11.74467 -11.52075 -11.44428 -11.32592 -11.22912 -11.02653 -10.97765 -10.78684 -10.74667 -10.18445 -10.14439 -9.64083 -9.19805 -8.81272 -8.71991 -8.10695 -6.18367 -4.20342 0.18642 2.50199 2.97484 3.20645 3.26159 3.38696 3.44587 3.63847 3.88261 4.11102 4.22256 4.35076 4.41163 4.54091 4.60575 4.62785 4.82575 5.04275 5.07235 5.17091 5.18609 5.25840 5.37914 5.44018 5.47715 5.52163 5.56595 5.70477 5.77104 5.92219 6.09824 6.19416 6.34027 6.40416 6.58709 6.87359 6.91170 7.22052 7.34101 7.56097 8.17919 8.55266 8.78698 8.97503 9.43154 10.93826 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018835 B = 0.003960 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.246229 B = 7069.032234 C = 7478.627558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.149 4.149 4 C 0.139 3.861 5 H 0.104 0.896 6 N -1.088 6.088 7 S 2.635 3.365 8 O -0.931 6.931 9 O -0.959 6.959 10 C -0.692 4.692 11 C -0.124 4.124 12 C -0.127 4.127 13 C 0.491 3.509 14 O -0.532 6.532 15 N -0.701 5.701 16 C 0.236 3.764 17 H 0.049 0.951 18 C -0.160 4.160 19 C -0.533 4.533 20 H 0.080 0.920 21 C 0.078 3.922 22 N -0.893 5.893 23 Si 0.885 3.115 24 H -0.277 1.277 25 H -0.294 1.294 26 H -0.261 1.261 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.420 0.580 35 H 0.158 0.842 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.393 0.607 41 H 0.052 0.948 42 H 0.046 0.954 43 H 0.035 0.965 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 22.863 4.428 23.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.117 4.117 3 C -0.206 4.206 4 C 0.027 3.973 5 H 0.121 0.879 6 N -0.847 5.847 7 S 2.725 3.275 8 O -0.921 6.921 9 O -0.949 6.949 10 C -0.799 4.799 11 C -0.162 4.162 12 C -0.166 4.166 13 C 0.273 3.727 14 O -0.408 6.408 15 N -0.350 5.350 16 C 0.132 3.868 17 H 0.067 0.933 18 C -0.218 4.218 19 C -0.571 4.571 20 H 0.098 0.902 21 C -0.125 4.125 22 N -0.530 5.530 23 Si 0.715 3.285 24 H -0.204 1.204 25 H -0.222 1.222 26 H -0.186 1.186 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.256 0.744 35 H 0.176 0.824 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.124 0.876 39 H 0.133 0.867 40 H 0.226 0.774 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.054 0.946 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.304 21.872 5.840 22.640 hybrid contribution -0.416 -0.091 -0.818 0.922 sum -0.111 21.781 5.022 22.353 Atomic orbital electron populations 1.21852 0.94188 1.03022 1.01785 1.21379 0.97369 0.96705 0.96257 1.21878 1.00966 0.95309 1.02443 1.20795 0.98726 0.91294 0.86481 0.87876 1.55217 1.28101 1.72326 1.29088 1.04249 0.75084 0.75122 0.73056 1.93691 1.82971 1.32615 1.82802 1.93578 1.64542 1.76920 1.59863 1.32682 1.22479 1.14229 1.10493 1.22819 1.02521 0.88635 1.02211 1.22755 0.97003 1.01171 0.95629 1.20697 0.81684 0.87550 0.82732 1.90673 1.37659 1.75396 1.37090 1.46149 1.51844 1.12655 1.24378 1.19103 0.91801 0.77839 0.98012 0.93275 1.22440 0.98789 0.99953 1.00592 1.21033 1.09490 0.93244 1.33310 0.90205 1.24822 0.96392 0.96988 0.94323 1.69870 1.36168 1.07646 1.39362 0.86884 0.82716 0.78247 0.80691 1.20375 1.22184 1.18608 0.92497 0.91991 0.91689 0.88939 0.91989 0.92116 0.92483 0.74363 0.82363 0.87028 0.86534 0.87577 0.86673 0.77365 0.92856 0.93533 0.94624 0.92338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.75 37.16 0.33 -1.23 16 2 C -0.10 -0.93 2.70 -90.62 -0.24 -1.17 16 3 C -0.15 -1.03 9.12 37.16 0.34 -0.69 16 4 C 0.14 1.76 2.22 -69.08 -0.15 1.60 16 5 H 0.10 1.06 7.08 -51.93 -0.37 0.70 16 6 N -1.09 -13.37 4.08 -5.88 -0.02 -13.39 16 7 S 2.64 34.64 5.74 -107.50 -0.62 34.03 16 8 O -0.93 -17.12 17.85 -57.54 -1.03 -18.15 16 9 O -0.96 -14.29 17.39 -57.54 -1.00 -15.29 16 10 C -0.69 -5.86 6.31 -26.73 -0.17 -6.03 16 11 C -0.12 -0.81 10.17 -26.73 -0.27 -1.09 16 12 C -0.13 -0.92 10.30 -26.73 -0.28 -1.20 16 13 C 0.49 9.13 6.06 -10.98 -0.07 9.06 16 14 O -0.53 -12.22 16.09 5.56 0.09 -12.13 16 15 N -0.70 -13.58 4.95 -54.93 -0.27 -13.85 16 16 C 0.24 5.67 2.15 -69.09 -0.15 5.52 16 17 H 0.05 1.34 6.63 -51.93 -0.34 0.99 16 18 C -0.16 -3.55 8.96 37.16 0.33 -3.21 16 19 C -0.53 -14.40 9.31 -34.44 -0.32 -14.72 16 20 H 0.08 2.24 7.98 -52.49 -0.42 1.82 16 21 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 22 N -0.89 -26.53 13.96 55.43 0.77 -25.76 16 23 Si 0.88 22.12 24.37 -169.99 -4.14 17.98 16 24 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.26 -6.58 6.53 56.52 0.37 -6.21 16 27 H 0.06 0.53 6.42 -51.93 -0.33 0.20 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.85 7.30 -51.93 -0.38 0.47 16 30 H 0.09 0.85 7.49 -51.93 -0.39 0.46 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.39 7.56 -51.93 -0.39 0.00 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.42 4.61 6.86 -34.47 -0.24 4.37 16 35 H 0.16 1.06 7.44 -51.93 -0.39 0.67 16 36 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.12 0.78 7.68 -51.93 -0.40 0.38 16 38 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.39 6.46 7.92 -40.82 -0.32 6.13 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 43 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 44 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -37.55 363.51 -8.19 -45.74 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -6.70 Total: 6.38 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -0.75 Total: -11.04 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: 0.48 Total: -53.00 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -1.94 Total: -45.57 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Atomic # 16 Polarization: 34.64 SS G_CDS: -0.62 Total: 34.03 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.55 -8.19 -45.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590434903.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.028 kcal (2) G-P(sol) polarization free energy of solvation -37.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds