Wall clock time and date at job start Fri Apr 10 2020 18:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46980 * 2 1 4 4 C 1.53002 * 109.47364 * 119.99672 * 2 1 3 5 5 H 1.08997 * 109.47622 * 182.70306 * 4 2 1 6 6 N 1.46498 * 109.47110 * 302.70899 * 4 2 1 7 7 S 1.65604 * 120.00169 * 216.27162 * 6 4 2 8 8 O 1.42103 * 104.27250 * 307.17287 * 7 6 4 9 9 O 1.42096 * 104.27869 * 179.31477 * 7 6 4 10 10 C 1.81397 * 104.44971 * 63.24118 * 7 6 4 11 11 C 1.52999 * 117.51837 * 106.22979 * 10 7 6 12 12 C 1.52994 * 117.49802 * 174.86128 * 10 7 6 13 13 C 1.50706 * 109.46618 * 62.70404 * 4 2 1 14 14 O 1.21281 * 120.00130 * 239.99872 * 13 4 2 15 15 N 1.34775 * 120.00030 * 60.00777 * 13 4 2 16 16 C 1.46493 * 120.00020 * 179.97438 * 15 13 4 17 17 H 1.09001 * 109.47164 * 324.99399 * 16 15 13 18 18 C 1.52999 * 109.47303 * 84.99781 * 16 15 13 19 19 C 1.50703 * 109.47028 * 204.99548 * 16 15 13 20 20 H 1.07998 * 119.99835 * 0.02562 * 19 16 15 21 21 C 1.37877 * 119.99882 * 179.97438 * 19 16 15 22 22 N 1.31520 * 119.99767 * 179.97438 * 21 19 16 23 23 Si 1.86796 * 120.00060 * 0.02562 * 21 19 16 24 24 H 1.48510 * 109.47247 * 90.00044 * 23 21 19 25 25 H 1.48497 * 109.47209 * 209.99618 * 23 21 19 26 26 H 1.48500 * 109.47443 * 330.00117 * 23 21 19 27 27 H 1.08996 * 109.47010 * 300.00180 * 1 2 3 28 28 H 1.08995 * 109.46855 * 60.00213 * 1 2 3 29 29 H 1.09005 * 109.46532 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47720 * 239.99997 * 2 1 3 31 31 H 1.08992 * 109.47171 * 304.17501 * 3 2 1 32 32 H 1.09003 * 109.47076 * 64.17366 * 3 2 1 33 33 H 1.09001 * 109.47582 * 184.17470 * 3 2 1 34 34 H 0.97004 * 120.00048 * 36.27121 * 6 4 2 35 35 H 1.09004 * 115.54943 * 320.52764 * 10 7 6 36 36 H 1.08996 * 117.50068 * 214.97128 * 11 10 7 37 37 H 1.09002 * 117.49610 * 359.97438 * 11 10 7 38 38 H 1.08998 * 117.50230 * 359.97423 * 12 10 7 39 39 H 1.09004 * 117.50118 * 145.00074 * 12 10 7 40 40 H 0.96999 * 119.99693 * 359.97438 * 15 13 4 41 41 H 1.09001 * 109.47322 * 59.99714 * 18 16 15 42 42 H 1.09003 * 109.47181 * 180.02562 * 18 16 15 43 43 H 1.09007 * 109.46942 * 299.99838 * 18 16 15 44 44 H 0.96997 * 119.99342 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 3.1290 -0.6794 1.2739 6 7 1.4992 -0.0692 2.4445 7 16 2.4263 0.0554 3.8110 8 8 2.8587 -1.2746 4.0635 9 8 1.5962 0.7440 4.7362 10 6 3.8265 1.0964 3.3147 11 6 3.8511 2.5385 3.8254 12 6 4.8223 1.5061 4.4016 13 6 1.5932 -2.1601 1.2162 14 8 0.8920 -2.5979 2.1037 15 7 1.9728 -2.9604 0.2005 16 6 1.5389 -4.3593 0.1686 17 1 1.4946 -4.7492 1.1855 18 6 0.1527 -4.4488 -0.4728 19 6 2.5191 -5.1710 -0.6384 20 1 3.3795 -4.6928 -1.0827 21 6 2.3180 -6.5244 -0.8086 22 7 3.1733 -7.2328 -1.5133 23 14 0.8303 -7.3516 -0.0395 24 1 -0.3058 -7.3148 -0.9953 25 1 1.1602 -8.7631 0.2829 26 1 0.4534 -6.6346 1.2051 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0278 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6169 1.9774 -0.8501 32 1 1.7390 1.9343 0.9250 33 1 3.1274 1.4435 -0.0748 34 1 0.5980 0.2895 2.4355 35 1 4.2205 0.9094 2.3157 36 1 4.2613 3.3002 3.1624 37 1 3.0256 2.8620 4.4594 38 1 4.6359 1.1505 5.4149 39 1 5.8714 1.5888 4.1177 40 1 2.5334 -2.6102 -0.5094 41 1 0.1970 -4.0588 -1.4897 42 1 -0.1704 -5.4896 -0.4961 43 1 -0.5563 -3.8616 0.1109 44 1 3.0320 -8.1849 -1.6327 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590434903.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:26 Heat of formation + Delta-G solvation = -112.154384 kcal Electronic energy + Delta-G solvation = -26377.477376 eV Core-core repulsion = 22649.879223 eV Total energy + Delta-G solvation = -3727.598153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.09492 -38.36414 -38.02144 -37.73055 -37.07031 -36.70140 -34.41668 -33.46422 -31.84843 -28.03661 -27.89325 -27.17941 -24.58868 -23.49918 -23.26683 -21.80223 -20.87956 -20.31182 -19.27509 -19.09835 -18.10446 -17.71874 -17.44379 -16.95470 -16.29066 -16.20682 -15.90386 -15.57400 -15.35947 -15.02659 -14.77753 -14.51626 -14.23738 -14.06875 -13.66021 -13.41019 -13.32068 -13.20294 -13.17005 -13.09411 -12.84407 -12.79196 -12.55154 -12.23321 -12.14681 -12.07113 -12.02804 -11.83244 -11.72213 -11.63356 -11.57510 -11.26967 -11.23517 -10.86710 -10.18601 -9.83495 -8.38280 -6.42657 -0.78429 1.24378 1.34094 1.43529 1.57535 1.78365 2.25575 2.31535 2.46563 2.74285 2.98294 3.31185 3.54419 3.60670 3.70663 3.80319 3.88303 3.97153 4.13395 4.32613 4.46437 4.53804 4.60465 4.64700 4.68856 4.70773 4.74440 4.89747 4.90343 5.00743 5.02322 5.07209 5.11656 5.27706 5.32692 5.42031 5.46060 5.53739 5.67765 5.96776 6.15850 6.58751 6.90721 7.20847 7.50802 8.76766 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018835 B = 0.003960 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.246229 B = 7069.032234 C = 7478.627558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.091 4.091 3 C -0.146 4.146 4 C 0.145 3.855 5 H 0.133 0.867 6 N -1.085 6.085 7 S 2.627 3.373 8 O -0.999 6.999 9 O -0.988 6.988 10 C -0.678 4.678 11 C -0.107 4.107 12 C -0.136 4.136 13 C 0.484 3.516 14 O -0.582 6.582 15 N -0.698 5.698 16 C 0.240 3.760 17 H 0.012 0.988 18 C -0.151 4.151 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.032 3.968 22 N -0.931 5.931 23 Si 0.934 3.066 24 H -0.257 1.257 25 H -0.293 1.293 26 H -0.271 1.271 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.029 0.971 30 H 0.100 0.900 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.423 0.577 35 H 0.187 0.813 36 H 0.146 0.854 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.141 0.859 40 H 0.409 0.591 41 H 0.070 0.930 42 H 0.037 0.963 43 H 0.042 0.958 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.420 26.165 3.356 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.111 4.111 3 C -0.203 4.203 4 C 0.034 3.966 5 H 0.150 0.850 6 N -0.844 5.844 7 S 2.723 3.277 8 O -0.988 6.988 9 O -0.978 6.978 10 C -0.791 4.791 11 C -0.145 4.145 12 C -0.175 4.175 13 C 0.269 3.731 14 O -0.462 6.462 15 N -0.349 5.349 16 C 0.134 3.866 17 H 0.030 0.970 18 C -0.209 4.209 19 C -0.567 4.567 20 H 0.081 0.919 21 C -0.168 4.168 22 N -0.570 5.570 23 Si 0.762 3.238 24 H -0.182 1.182 25 H -0.220 1.220 26 H -0.197 1.197 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.049 0.951 30 H 0.118 0.882 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.261 0.739 35 H 0.205 0.795 36 H 0.164 0.836 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.159 0.841 40 H 0.245 0.755 41 H 0.089 0.911 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.919 25.173 4.762 25.636 hybrid contribution -0.536 -1.014 -0.434 1.226 sum 0.383 24.159 4.328 24.546 Atomic orbital electron populations 1.21888 0.94995 1.01116 1.03117 1.21428 0.96698 0.98557 0.94399 1.21891 1.02220 0.92733 1.03457 1.20928 1.00325 0.87222 0.88170 0.85001 1.55071 1.28748 1.72117 1.28512 1.04077 0.76034 0.74533 0.73009 1.93617 1.84031 1.37162 1.84037 1.93530 1.66181 1.76867 1.61236 1.32207 1.20040 1.14526 1.12282 1.23097 1.01801 0.87883 1.01760 1.23095 0.98347 1.00992 0.95061 1.21869 0.80326 0.89820 0.81106 1.90646 1.39883 1.76918 1.38737 1.45961 1.52307 1.11055 1.25539 1.18732 0.92348 0.80085 0.95387 0.97002 1.22301 0.97517 0.99587 1.01493 1.21252 1.09350 0.93548 1.32521 0.91924 1.25475 0.98641 0.97806 0.94859 1.69962 1.37888 1.08116 1.41052 0.86087 0.80703 0.77127 0.79888 1.18235 1.22003 1.19673 0.91939 0.89970 0.95144 0.88234 0.90700 0.91414 0.90587 0.73896 0.79530 0.83642 0.86899 0.88107 0.84133 0.75540 0.91078 0.94456 0.93917 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.75 71.98 0.63 -2.26 16 2 C -0.09 -1.48 2.70 -10.79 -0.03 -1.51 16 3 C -0.15 -1.34 9.12 71.98 0.66 -0.68 16 4 C 0.15 3.45 2.22 44.25 0.10 3.55 16 5 H 0.13 2.36 7.08 -2.39 -0.02 2.34 16 6 N -1.09 -25.74 4.08 -172.52 -0.70 -26.45 16 7 S 2.63 68.32 5.74 -56.49 -0.32 67.99 16 8 O -1.00 -38.18 17.85 -127.65 -2.28 -40.46 16 9 O -0.99 -29.77 17.39 -127.65 -2.22 -31.99 16 10 C -0.68 -9.24 6.31 30.59 0.19 -9.05 16 11 C -0.11 -0.95 10.17 30.59 0.31 -0.64 16 12 C -0.14 -1.53 10.30 30.59 0.31 -1.21 16 13 C 0.48 18.11 6.06 87.66 0.53 18.64 16 14 O -0.58 -27.78 16.09 -3.03 -0.05 -27.82 16 15 N -0.70 -27.11 4.95 -446.10 -2.21 -29.31 16 16 C 0.24 11.69 2.15 44.25 0.10 11.79 16 17 H 0.01 0.68 6.63 -2.39 -0.02 0.66 16 18 C -0.15 -6.66 8.96 71.98 0.65 -6.02 16 19 C -0.53 -28.98 9.31 25.60 0.24 -28.74 16 20 H 0.06 3.58 7.98 -2.91 -0.02 3.55 16 21 C 0.03 1.83 5.45 84.65 0.46 2.29 16 22 N -0.93 -56.00 13.96 21.45 0.30 -55.70 16 23 Si 0.93 46.12 24.37 68.60 1.67 47.79 16 24 H -0.26 -11.77 6.87 99.48 0.68 -11.09 16 25 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 26 H -0.27 -13.75 6.53 99.48 0.65 -13.10 16 27 H 0.06 1.08 6.42 -2.39 -0.02 1.06 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.03 0.77 7.30 -2.38 -0.02 0.76 16 30 H 0.10 1.52 7.49 -2.39 -0.02 1.50 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 0.56 7.56 -2.39 -0.02 0.54 16 33 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.42 9.09 6.86 -96.74 -0.66 8.42 16 35 H 0.19 1.54 7.44 -2.38 -0.02 1.52 16 36 H 0.15 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.11 1.15 7.68 -2.39 -0.02 1.13 16 38 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.14 0.92 8.14 -2.38 -0.02 0.90 16 40 H 0.41 13.10 7.92 -92.71 -0.73 12.36 16 41 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 42 H 0.04 1.70 3.27 -2.39 -0.01 1.69 16 43 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 44 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -86.11 363.51 -2.12 -88.23 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -0.45 Total: 21.58 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: 4.15 Total: -13.85 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -2.61 Total: -111.46 kcal Atomic # 8 Polarization: -95.73 SS G_CDS: -4.55 Total: -100.27 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 1.67 Total: 47.79 kcal Atomic # 16 Polarization: 68.32 SS G_CDS: -0.32 Total: 67.99 kcal Total: -86.11 -2.12 -88.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590434903.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.928 kcal (2) G-P(sol) polarization free energy of solvation -86.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds