Wall clock time and date at job start Fri Apr 10 2020 18:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47434 * 2 1 4 4 C 1.52999 * 109.46996 * 120.00426 * 2 1 3 5 5 H 1.09006 * 109.47013 * 182.14568 * 4 2 1 6 6 N 1.46498 * 109.46985 * 302.14509 * 4 2 1 7 7 S 1.65602 * 120.00098 * 215.66325 * 6 4 2 8 8 O 1.42101 * 104.27794 * 179.90709 * 7 6 4 9 9 O 1.42099 * 104.27533 * 307.76177 * 7 6 4 10 10 C 1.81394 * 104.44862 * 63.83250 * 7 6 4 11 11 C 1.52992 * 117.50312 * 249.33413 * 10 7 6 12 12 C 1.53001 * 117.49826 * 180.67200 * 10 7 6 13 13 C 1.50704 * 109.47182 * 62.14870 * 4 2 1 14 14 O 1.21285 * 119.99604 * 262.33344 * 13 4 2 15 15 N 1.34772 * 119.99956 * 82.33549 * 13 4 2 16 16 C 1.46500 * 119.99920 * 185.20298 * 15 13 4 17 17 H 1.09001 * 109.46902 * 35.00517 * 16 15 13 18 18 C 1.52999 * 109.47458 * 275.00456 * 16 15 13 19 19 C 1.50696 * 109.47165 * 154.99772 * 16 15 13 20 20 H 1.08005 * 120.00123 * 34.73889 * 19 16 15 21 21 C 1.37876 * 120.00512 * 214.73519 * 19 16 15 22 22 N 1.31515 * 120.00454 * 183.30040 * 21 19 16 23 23 Si 1.86809 * 119.99726 * 3.30040 * 21 19 16 24 24 H 1.48500 * 109.46858 * 85.90191 * 23 21 19 25 25 H 1.48500 * 109.47083 * 205.90670 * 23 21 19 26 26 H 1.48508 * 109.46710 * 325.90586 * 23 21 19 27 27 H 1.08997 * 109.46997 * 305.39929 * 1 2 3 28 28 H 1.09004 * 109.47112 * 65.39223 * 1 2 3 29 29 H 1.08997 * 109.47774 * 185.39100 * 1 2 3 30 30 H 1.09001 * 109.46884 * 240.00337 * 2 1 3 31 31 H 1.09001 * 109.47038 * 174.97191 * 3 2 1 32 32 H 1.08996 * 109.47219 * 294.97511 * 3 2 1 33 33 H 1.09006 * 109.46892 * 54.97188 * 3 2 1 34 34 H 0.97003 * 119.99857 * 35.66719 * 6 4 2 35 35 H 1.09006 * 115.54841 * 35.01219 * 10 7 6 36 36 H 1.09005 * 117.49813 * 0.02562 * 11 10 7 37 37 H 1.09000 * 117.50154 * 145.02117 * 11 10 7 38 38 H 1.09006 * 117.50071 * 214.97719 * 12 10 7 39 39 H 1.09000 * 117.49952 * 0.02562 * 12 10 7 40 40 H 0.96996 * 120.00539 * 5.20603 * 15 13 4 41 41 H 1.09002 * 109.46987 * 55.59827 * 18 16 15 42 42 H 1.09003 * 109.46598 * 295.60550 * 18 16 15 43 43 H 1.08993 * 109.47222 * 175.60366 * 18 16 15 44 44 H 0.97002 * 119.99683 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 3.1293 -0.6881 1.2686 6 7 1.5098 -0.0613 2.4448 7 16 2.4386 0.0468 3.8116 8 8 1.6147 0.7362 4.7416 9 8 2.8601 -1.2882 4.0552 10 6 3.8470 1.0795 3.3212 11 6 5.2163 0.4047 3.2195 12 6 4.9180 1.3610 4.3769 13 6 1.5815 -2.1567 1.2227 14 8 0.5939 -2.4894 1.8432 15 7 2.2691 -3.0706 0.5097 16 6 1.7615 -4.4397 0.3905 17 1 0.6723 -4.4212 0.3513 18 6 2.2143 -5.2588 1.6009 19 6 2.2989 -5.0668 -0.8700 20 1 3.2936 -4.8230 -1.2128 21 6 1.5208 -5.9519 -1.5857 22 7 2.0128 -6.5487 -2.6494 23 14 -0.2322 -6.3034 -1.0444 24 1 -1.1431 -5.2840 -1.6245 25 1 -0.6348 -7.6527 -1.5160 26 1 -0.3122 -6.2526 0.4376 27 1 -0.3633 0.5953 0.8377 28 1 -0.3633 0.4279 -0.9344 29 1 -0.3634 -1.0230 0.0965 30 1 1.8933 -0.5138 -0.8900 31 1 3.1263 1.4437 0.0901 32 1 1.7521 1.9297 -0.9315 33 1 1.6050 1.9817 0.8416 34 1 0.6147 0.3124 2.4359 35 1 3.6225 1.8727 2.6080 36 1 5.2709 -0.6599 3.4468 37 1 5.8929 0.7542 2.4396 38 1 5.3986 2.3392 4.3580 39 1 4.7766 0.9254 5.3660 40 1 3.1000 -2.8220 0.0754 41 1 1.8919 -4.7628 2.5164 42 1 3.3011 -5.3428 1.5966 43 1 1.7727 -6.2540 1.5519 44 1 1.4651 -7.1711 -3.1530 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590434908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:30 Heat of formation + Delta-G solvation = -91.984132 kcal Electronic energy + Delta-G solvation = -26516.644119 eV Core-core repulsion = 22789.920613 eV Total energy + Delta-G solvation = -3726.723506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.65272 -37.49939 -36.96759 -36.70147 -35.97157 -34.74938 -32.64657 -32.31330 -29.95961 -27.27990 -26.62909 -25.23643 -23.82759 -22.99292 -21.52316 -20.32758 -19.56750 -19.32971 -18.11002 -17.76588 -16.94605 -16.32596 -16.09968 -15.64120 -15.09678 -14.91264 -14.66215 -14.31777 -14.04611 -13.80317 -13.28118 -12.99086 -12.57510 -12.49106 -12.35287 -12.28341 -12.21428 -12.10549 -11.98773 -11.94873 -11.46188 -11.44499 -11.40626 -11.19999 -11.10999 -11.01581 -10.96739 -10.77697 -10.72390 -10.49305 -10.19009 -9.85855 -9.15870 -8.81336 -8.67126 -8.03589 -6.22627 -4.25765 0.15739 2.52058 2.87299 3.22799 3.28203 3.34683 3.43290 3.69416 3.95463 4.01291 4.22943 4.33534 4.43527 4.60914 4.66756 4.69216 4.86534 5.07052 5.09126 5.17873 5.19557 5.34293 5.42135 5.47426 5.54867 5.56481 5.63301 5.78366 5.85298 6.00464 6.18438 6.35261 6.41538 6.65724 6.77103 6.91351 7.01503 7.25840 7.42915 7.60370 8.15317 8.59625 8.78022 9.00959 9.40057 10.89081 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.004235 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.122470 B = 6609.292351 C = 6941.134793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 C -0.147 4.147 4 C 0.141 3.859 5 H 0.100 0.900 6 N -1.090 6.090 7 S 2.635 3.365 8 O -0.958 6.958 9 O -0.939 6.939 10 C -0.692 4.692 11 C -0.127 4.127 12 C -0.127 4.127 13 C 0.493 3.507 14 O -0.541 6.541 15 N -0.702 5.702 16 C 0.234 3.766 17 H 0.048 0.952 18 C -0.149 4.149 19 C -0.528 4.528 20 H 0.079 0.921 21 C 0.081 3.919 22 N -0.890 5.890 23 Si 0.873 3.127 24 H -0.274 1.274 25 H -0.286 1.286 26 H -0.260 1.260 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.421 0.579 35 H 0.160 0.840 36 H 0.120 0.880 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.392 0.608 41 H 0.034 0.966 42 H 0.046 0.954 43 H 0.050 0.950 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.425 19.360 7.465 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.115 4.115 3 C -0.204 4.204 4 C 0.029 3.971 5 H 0.118 0.882 6 N -0.850 5.850 7 S 2.724 3.276 8 O -0.948 6.948 9 O -0.928 6.928 10 C -0.800 4.800 11 C -0.164 4.164 12 C -0.166 4.166 13 C 0.275 3.725 14 O -0.419 6.419 15 N -0.351 5.351 16 C 0.131 3.869 17 H 0.065 0.935 18 C -0.208 4.208 19 C -0.566 4.566 20 H 0.097 0.903 21 C -0.123 4.123 22 N -0.527 5.527 23 Si 0.699 3.301 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.184 1.184 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.257 0.743 35 H 0.178 0.822 36 H 0.139 0.861 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.124 0.876 40 H 0.225 0.775 41 H 0.053 0.947 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.656 18.489 8.573 20.905 hybrid contribution -0.628 0.473 -0.710 1.059 sum 4.028 18.962 7.864 20.919 Atomic orbital electron populations 1.21867 0.94124 1.03472 1.01536 1.21313 0.97458 0.96414 0.96320 1.21875 1.00866 0.95421 1.02265 1.20824 0.98518 0.91289 0.86452 0.88229 1.55242 1.28883 1.71815 1.29039 1.04243 0.75067 0.75180 0.73073 1.93591 1.64814 1.76778 1.59611 1.93663 1.83381 1.32522 1.83268 1.32708 1.11723 1.19990 1.15533 1.22933 0.92254 1.00029 1.01213 1.22749 0.97450 1.02706 0.93648 1.20727 0.84691 0.87095 0.79942 1.90637 1.27090 1.80987 1.43189 1.46589 1.25741 1.12097 1.50646 1.19102 0.95579 0.77585 0.94620 0.93461 1.22218 1.00690 0.99845 0.98054 1.21021 1.02981 1.25988 1.06607 0.90304 1.24919 0.98177 0.95039 0.94146 1.69880 1.37165 1.28225 1.17410 0.86922 0.85095 0.77796 0.80263 1.19953 1.21209 1.18389 0.92625 0.92211 0.91215 0.88740 0.92477 0.91994 0.92409 0.74250 0.82171 0.86141 0.86781 0.86769 0.87629 0.77526 0.94735 0.93465 0.93143 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.71 37.16 0.32 -1.51 16 2 C -0.09 -1.03 2.76 -90.62 -0.25 -1.28 16 3 C -0.15 -1.13 8.99 37.16 0.33 -0.80 16 4 C 0.14 1.83 2.21 -69.08 -0.15 1.67 16 5 H 0.10 1.01 7.66 -51.93 -0.40 0.61 16 6 N -1.09 -13.62 4.33 -5.88 -0.03 -13.65 16 7 S 2.63 33.71 5.75 -107.50 -0.62 33.09 16 8 O -0.96 -14.81 18.08 -57.54 -1.04 -15.85 16 9 O -0.94 -15.74 17.13 -57.54 -0.99 -16.73 16 10 C -0.69 -5.63 6.16 -26.73 -0.16 -5.79 16 11 C -0.13 -0.92 10.17 -26.70 -0.27 -1.19 16 12 C -0.13 -0.88 10.30 -26.69 -0.27 -1.16 16 13 C 0.49 9.25 6.02 -10.99 -0.07 9.18 16 14 O -0.54 -12.26 15.65 5.55 0.09 -12.17 16 15 N -0.70 -13.85 5.07 -54.93 -0.28 -14.13 16 16 C 0.23 5.58 2.14 -69.08 -0.15 5.43 16 17 H 0.05 1.23 4.87 -51.93 -0.25 0.97 16 18 C -0.15 -3.44 9.47 37.16 0.35 -3.08 16 19 C -0.53 -13.98 9.05 -34.44 -0.31 -14.29 16 20 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 21 C 0.08 2.25 5.47 -17.82 -0.10 2.16 16 22 N -0.89 -25.93 13.96 55.43 0.77 -25.15 16 23 Si 0.87 21.54 26.89 -169.99 -4.57 16.97 16 24 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.26 -6.40 6.70 56.52 0.38 -6.02 16 27 H 0.05 0.59 6.68 -51.93 -0.35 0.24 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 1.08 6.69 -51.93 -0.35 0.74 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.40 7.82 -51.93 -0.41 0.00 16 34 H 0.42 4.90 6.99 -34.47 -0.24 4.66 16 35 H 0.16 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.12 0.99 7.66 -51.93 -0.40 0.59 16 37 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.39 6.60 8.60 -40.82 -0.35 6.25 16 41 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 1.16 7.91 -51.93 -0.41 0.75 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 371.80 15.07 5.60 5.60 Total: -1.00 -36.39 371.80 -8.74 -45.13 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.96 Total: 7.55 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -0.73 Total: -10.66 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: 0.47 Total: -52.93 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -1.94 Total: -44.75 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.57 Total: 16.97 kcal Atomic # 16 Polarization: 33.71 SS G_CDS: -0.62 Total: 33.09 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.39 -8.74 -45.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590434908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.854 kcal (2) G-P(sol) polarization free energy of solvation -36.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds