Wall clock time and date at job start Fri Apr 10 2020 18:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47434 * 2 1 4 4 C 1.52999 * 109.46996 * 120.00426 * 2 1 3 5 5 H 1.09006 * 109.47013 * 182.14568 * 4 2 1 6 6 N 1.46498 * 109.46985 * 302.14509 * 4 2 1 7 7 S 1.65602 * 120.00098 * 215.66325 * 6 4 2 8 8 O 1.42101 * 104.27794 * 179.90709 * 7 6 4 9 9 O 1.42099 * 104.27533 * 307.76177 * 7 6 4 10 10 C 1.81394 * 104.44862 * 63.83250 * 7 6 4 11 11 C 1.52992 * 117.50312 * 249.33413 * 10 7 6 12 12 C 1.53001 * 117.49826 * 180.67200 * 10 7 6 13 13 C 1.50704 * 109.47182 * 62.14870 * 4 2 1 14 14 O 1.21285 * 119.99604 * 262.33344 * 13 4 2 15 15 N 1.34772 * 119.99956 * 82.33549 * 13 4 2 16 16 C 1.46500 * 119.99920 * 185.20298 * 15 13 4 17 17 H 1.09001 * 109.46902 * 35.00517 * 16 15 13 18 18 C 1.52999 * 109.47458 * 275.00456 * 16 15 13 19 19 C 1.50696 * 109.47165 * 154.99772 * 16 15 13 20 20 H 1.08005 * 120.00123 * 34.73889 * 19 16 15 21 21 C 1.37876 * 120.00512 * 214.73519 * 19 16 15 22 22 N 1.31515 * 120.00454 * 183.30040 * 21 19 16 23 23 Si 1.86809 * 119.99726 * 3.30040 * 21 19 16 24 24 H 1.48500 * 109.46858 * 85.90191 * 23 21 19 25 25 H 1.48500 * 109.47083 * 205.90670 * 23 21 19 26 26 H 1.48508 * 109.46710 * 325.90586 * 23 21 19 27 27 H 1.08997 * 109.46997 * 305.39929 * 1 2 3 28 28 H 1.09004 * 109.47112 * 65.39223 * 1 2 3 29 29 H 1.08997 * 109.47774 * 185.39100 * 1 2 3 30 30 H 1.09001 * 109.46884 * 240.00337 * 2 1 3 31 31 H 1.09001 * 109.47038 * 174.97191 * 3 2 1 32 32 H 1.08996 * 109.47219 * 294.97511 * 3 2 1 33 33 H 1.09006 * 109.46892 * 54.97188 * 3 2 1 34 34 H 0.97003 * 119.99857 * 35.66719 * 6 4 2 35 35 H 1.09006 * 115.54841 * 35.01219 * 10 7 6 36 36 H 1.09005 * 117.49813 * 0.02562 * 11 10 7 37 37 H 1.09000 * 117.50154 * 145.02117 * 11 10 7 38 38 H 1.09006 * 117.50071 * 214.97719 * 12 10 7 39 39 H 1.09000 * 117.49952 * 0.02562 * 12 10 7 40 40 H 0.96996 * 120.00539 * 5.20603 * 15 13 4 41 41 H 1.09002 * 109.46987 * 55.59827 * 18 16 15 42 42 H 1.09003 * 109.46598 * 295.60550 * 18 16 15 43 43 H 1.08993 * 109.47222 * 175.60366 * 18 16 15 44 44 H 0.97002 * 119.99683 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 1 3.1293 -0.6881 1.2686 6 7 1.5098 -0.0613 2.4448 7 16 2.4386 0.0468 3.8116 8 8 1.6147 0.7362 4.7416 9 8 2.8601 -1.2882 4.0552 10 6 3.8470 1.0795 3.3212 11 6 5.2163 0.4047 3.2195 12 6 4.9180 1.3610 4.3769 13 6 1.5815 -2.1567 1.2227 14 8 0.5939 -2.4894 1.8432 15 7 2.2691 -3.0706 0.5097 16 6 1.7615 -4.4397 0.3905 17 1 0.6723 -4.4212 0.3513 18 6 2.2143 -5.2588 1.6009 19 6 2.2989 -5.0668 -0.8700 20 1 3.2936 -4.8230 -1.2128 21 6 1.5208 -5.9519 -1.5857 22 7 2.0128 -6.5487 -2.6494 23 14 -0.2322 -6.3034 -1.0444 24 1 -1.1431 -5.2840 -1.6245 25 1 -0.6348 -7.6527 -1.5160 26 1 -0.3122 -6.2526 0.4376 27 1 -0.3633 0.5953 0.8377 28 1 -0.3633 0.4279 -0.9344 29 1 -0.3634 -1.0230 0.0965 30 1 1.8933 -0.5138 -0.8900 31 1 3.1263 1.4437 0.0901 32 1 1.7521 1.9297 -0.9315 33 1 1.6050 1.9817 0.8416 34 1 0.6147 0.3124 2.4359 35 1 3.6225 1.8727 2.6080 36 1 5.2709 -0.6599 3.4468 37 1 5.8929 0.7542 2.4396 38 1 5.3986 2.3392 4.3580 39 1 4.7766 0.9254 5.3660 40 1 3.1000 -2.8220 0.0754 41 1 1.8919 -4.7628 2.5164 42 1 3.3011 -5.3428 1.5966 43 1 1.7727 -6.2540 1.5519 44 1 1.4651 -7.1711 -3.1530 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590434908.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:29 Heat of formation + Delta-G solvation = -121.436351 kcal Electronic energy + Delta-G solvation = -26517.921263 eV Core-core repulsion = 22789.920613 eV Total energy + Delta-G solvation = -3728.000650 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.04758 -38.38648 -37.93023 -37.78690 -37.07941 -36.52338 -34.36073 -33.54018 -31.75069 -28.04282 -27.81590 -27.29188 -24.53878 -23.49464 -23.09507 -21.58933 -21.04386 -20.34636 -19.40013 -19.02343 -18.20462 -17.59961 -17.44106 -16.89266 -16.32521 -16.06486 -15.81037 -15.55274 -15.40786 -14.88334 -14.54672 -14.53309 -14.28467 -14.12418 -13.41314 -13.34944 -13.23874 -13.20089 -13.11718 -13.04767 -12.88791 -12.79414 -12.55038 -12.43442 -12.13208 -12.10542 -12.06539 -11.90468 -11.88353 -11.75140 -11.57481 -11.25868 -11.21579 -10.85467 -10.15016 -9.76427 -8.38141 -6.43067 -0.78777 1.27072 1.32322 1.43634 1.57067 1.81895 2.20845 2.26875 2.49610 2.83029 3.04414 3.25997 3.54815 3.68782 3.75441 3.81481 3.89629 3.97530 4.14745 4.31701 4.45543 4.59977 4.63543 4.67831 4.73680 4.76269 4.84348 4.86302 4.93243 4.98451 5.07669 5.08832 5.10151 5.26535 5.36422 5.41177 5.46309 5.50125 5.78657 5.94840 6.15303 6.61600 6.94954 7.22994 7.52199 8.76568 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018059 B = 0.004235 C = 0.004033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.122470 B = 6609.292351 C = 6941.134793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.091 4.091 3 C -0.144 4.144 4 C 0.149 3.851 5 H 0.136 0.864 6 N -1.089 6.089 7 S 2.626 3.374 8 O -0.994 6.994 9 O -0.991 6.991 10 C -0.672 4.672 11 C -0.126 4.126 12 C -0.127 4.127 13 C 0.485 3.515 14 O -0.586 6.586 15 N -0.702 5.702 16 C 0.237 3.763 17 H 0.026 0.974 18 C -0.143 4.143 19 C -0.520 4.520 20 H 0.063 0.937 21 C 0.038 3.962 22 N -0.927 5.927 23 Si 0.920 3.080 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.264 1.264 27 H 0.066 0.934 28 H 0.074 0.926 29 H 0.025 0.975 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.422 0.578 35 H 0.196 0.804 36 H 0.105 0.895 37 H 0.146 0.854 38 H 0.145 0.855 39 H 0.101 0.899 40 H 0.407 0.593 41 H 0.028 0.972 42 H 0.058 0.942 43 H 0.045 0.955 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.057 22.417 7.218 24.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.111 4.111 3 C -0.201 4.201 4 C 0.037 3.963 5 H 0.153 0.847 6 N -0.848 5.848 7 S 2.723 3.277 8 O -0.985 6.985 9 O -0.981 6.981 10 C -0.785 4.785 11 C -0.164 4.164 12 C -0.166 4.166 13 C 0.270 3.730 14 O -0.466 6.466 15 N -0.352 5.352 16 C 0.133 3.867 17 H 0.044 0.956 18 C -0.202 4.202 19 C -0.558 4.558 20 H 0.081 0.919 21 C -0.162 4.162 22 N -0.566 5.566 23 Si 0.746 3.254 24 H -0.198 1.198 25 H -0.203 1.203 26 H -0.189 1.189 27 H 0.085 0.915 28 H 0.093 0.907 29 H 0.045 0.955 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.259 0.741 35 H 0.214 0.786 36 H 0.123 0.877 37 H 0.164 0.836 38 H 0.163 0.837 39 H 0.119 0.881 40 H 0.242 0.758 41 H 0.047 0.953 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.251 21.536 8.342 23.927 hybrid contribution -1.050 -0.420 -0.580 1.271 sum 5.201 21.116 7.762 23.091 Atomic orbital electron populations 1.21891 0.95479 1.00998 1.02894 1.21356 0.96341 0.98659 0.94739 1.21885 1.02403 0.92444 1.03329 1.20904 1.00448 0.87166 0.87744 0.84674 1.55148 1.29501 1.71613 1.28559 1.04124 0.75991 0.74745 0.72822 1.93539 1.66854 1.76963 1.61119 1.93601 1.84186 1.36185 1.84172 1.32261 1.08903 1.19812 1.17497 1.23159 0.91400 0.99526 1.02282 1.23090 0.95947 1.04239 0.93310 1.21851 0.83622 0.89279 0.78235 1.90610 1.29001 1.82200 1.44821 1.46327 1.26573 1.10931 1.51416 1.18808 0.94344 0.79837 0.93751 0.95602 1.22133 1.01336 0.99340 0.97348 1.21152 1.02179 1.25439 1.07038 0.91883 1.25495 1.01088 0.95267 0.94391 1.69959 1.38461 1.29454 1.18724 0.86163 0.81766 0.77979 0.79531 1.19789 1.20250 1.18856 0.91463 0.90716 0.95549 0.88912 0.90069 0.90973 0.91426 0.74063 0.78622 0.87659 0.83605 0.83652 0.88097 0.75779 0.95314 0.92290 0.93638 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.60 8.71 71.98 0.63 -2.97 16 2 C -0.09 -1.75 2.76 -10.79 -0.03 -1.78 16 3 C -0.14 -1.56 8.99 71.98 0.65 -0.91 16 4 C 0.15 3.60 2.21 44.25 0.10 3.70 16 5 H 0.14 2.28 7.66 -2.38 -0.02 2.26 16 6 N -1.09 -25.91 4.33 -172.52 -0.75 -26.66 16 7 S 2.63 64.78 5.75 -56.49 -0.32 64.46 16 8 O -0.99 -30.69 18.08 -127.65 -2.31 -33.00 16 9 O -0.99 -33.70 17.13 -127.65 -2.19 -35.89 16 10 C -0.67 -8.24 6.16 30.59 0.19 -8.05 16 11 C -0.13 -1.30 10.17 30.62 0.31 -0.99 16 12 C -0.13 -1.26 10.30 30.62 0.32 -0.94 16 13 C 0.49 18.22 6.02 87.66 0.53 18.74 16 14 O -0.59 -27.35 15.65 -3.05 -0.05 -27.40 16 15 N -0.70 -27.67 5.07 -446.10 -2.26 -29.93 16 16 C 0.24 11.45 2.14 44.24 0.09 11.54 16 17 H 0.03 1.37 4.87 -2.39 -0.01 1.36 16 18 C -0.14 -6.63 9.47 71.98 0.68 -5.95 16 19 C -0.52 -27.79 9.05 25.60 0.23 -27.56 16 20 H 0.06 3.52 8.06 -2.91 -0.02 3.50 16 21 C 0.04 2.14 5.47 84.65 0.46 2.60 16 22 N -0.93 -54.55 13.96 21.45 0.30 -54.25 16 23 Si 0.92 45.02 26.89 68.60 1.84 46.86 16 24 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 26 H -0.26 -12.99 6.70 99.48 0.67 -12.32 16 27 H 0.07 1.36 6.68 -2.39 -0.02 1.34 16 28 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.03 0.83 6.69 -2.39 -0.02 0.81 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.63 7.82 -2.38 -0.02 0.61 16 34 H 0.42 9.56 6.99 -96.74 -0.68 8.89 16 35 H 0.20 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.11 1.48 7.66 -2.38 -0.02 1.47 16 37 H 0.15 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.15 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.41 13.35 8.60 -92.71 -0.80 12.56 16 41 H 0.03 1.33 8.07 -2.39 -0.02 1.31 16 42 H 0.06 2.54 8.14 -2.39 -0.02 2.53 16 43 H 0.04 2.11 7.91 -2.39 -0.02 2.09 16 44 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -82.61 371.80 -2.07 -84.68 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.50 Total: 23.69 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: 4.16 Total: -12.56 kcal Atomic # 7 Polarization: -108.13 SS G_CDS: -2.71 Total: -110.84 kcal Atomic # 8 Polarization: -91.75 SS G_CDS: -4.54 Total: -96.29 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.84 Total: 46.86 kcal Atomic # 16 Polarization: 64.78 SS G_CDS: -0.32 Total: 64.46 kcal Total: -82.61 -2.07 -84.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590434908.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.755 kcal (2) G-P(sol) polarization free energy of solvation -82.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds