Wall clock time and date at job start Fri Apr 10 2020 18:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46506 * 109.47726 * 2 1 4 4 C 1.46756 * 124.34968 * 89.99073 * 3 2 1 5 5 C 1.54487 * 105.47255 * 162.96859 * 4 3 2 6 6 C 1.54626 * 101.76119 * 25.41844 * 5 4 3 7 7 H 1.09001 * 110.48509 * 216.52662 * 6 5 4 8 8 N 1.46501 * 110.48894 * 93.88159 * 6 5 4 9 9 S 1.65599 * 120.00245 * 144.99643 * 8 6 5 10 10 O 1.42107 * 104.27645 * 181.07201 * 9 8 6 11 11 O 1.42094 * 104.27805 * 308.93232 * 9 8 6 12 12 C 1.81401 * 104.44950 * 65.00128 * 9 8 6 13 13 C 1.52996 * 109.47367 * 179.97438 * 12 9 8 14 14 C 1.53005 * 109.47056 * 300.00490 * 13 12 9 15 15 C 1.53004 * 109.46992 * 60.00036 * 13 12 9 16 16 C 1.50691 * 109.47477 * 180.02562 * 13 12 9 17 17 H 1.08006 * 119.99967 * 0.02562 * 16 13 12 18 18 C 1.37873 * 120.00280 * 179.97438 * 16 13 12 19 19 N 1.31512 * 120.00354 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 120.00242 * 180.02562 * 18 16 13 21 21 H 1.48496 * 109.47067 * 60.00120 * 20 18 16 22 22 H 1.48497 * 109.47308 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46875 * 300.00205 * 20 18 16 24 24 C 1.34415 * 124.34697 * 269.98020 * 3 2 1 25 25 O 1.21282 * 124.94358 * 0.38351 * 24 3 2 26 26 H 1.09003 * 109.47386 * 300.00583 * 1 2 3 27 27 H 1.09006 * 109.46729 * 60.00388 * 1 2 3 28 28 H 1.09000 * 109.47331 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47386 * 239.99417 * 2 1 3 30 30 H 1.09005 * 109.47466 * 119.99703 * 2 1 3 31 31 H 1.09002 * 110.24543 * 43.97622 * 4 3 2 32 32 H 1.08993 * 110.25204 * 281.97024 * 4 3 2 33 33 H 1.08996 * 110.96940 * 143.53836 * 5 4 3 34 34 H 1.08997 * 110.97180 * 267.30251 * 5 4 3 35 35 H 0.97001 * 119.99400 * 324.99790 * 8 6 5 36 36 H 1.09000 * 109.47136 * 300.00209 * 12 9 8 37 37 H 1.09000 * 109.46868 * 59.99758 * 12 9 8 38 38 H 1.08995 * 109.47304 * 59.99690 * 14 13 12 39 39 H 1.08998 * 109.46773 * 180.02562 * 14 13 12 40 40 H 1.09002 * 109.46899 * 299.99307 * 14 13 12 41 41 H 1.09000 * 109.46885 * 59.99986 * 15 13 12 42 42 H 1.09000 * 109.46854 * 180.02562 * 15 13 12 43 43 H 1.09008 * 109.46904 * 300.00157 * 15 13 12 44 44 H 0.96996 * 120.00991 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2943 2.1620 1.2116 5 6 3.1750 3.3438 0.7487 6 6 2.7703 3.4750 -0.7379 7 1 3.6338 3.7452 -1.3458 8 7 1.7022 4.4656 -0.8931 9 16 1.6534 5.4264 -2.2410 10 8 0.5218 6.2611 -2.0356 11 8 2.9616 5.9741 -2.3286 12 6 1.3535 4.2728 -3.6085 13 6 1.2861 5.0491 -4.9251 14 6 0.1469 6.0683 -4.8585 15 6 2.6108 5.7793 -5.1551 16 6 1.0364 4.0909 -6.0611 17 1 0.9354 3.0338 -5.8636 18 6 0.9358 4.5636 -7.3523 19 7 1.0582 5.8507 -7.5928 20 14 0.6255 3.3758 -8.7603 21 1 -0.6604 2.6677 -8.5363 22 1 0.5602 4.1293 -10.0383 23 1 1.7308 2.3862 -8.8257 24 6 2.2717 2.0961 -1.1098 25 8 2.1228 1.6938 -2.2442 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.8321 1.5530 1.9384 32 1 1.3638 2.5311 1.6426 33 1 2.9314 4.2515 1.3009 34 1 4.2336 3.1027 0.8450 35 1 1.0236 4.5587 -0.2062 36 1 2.1649 3.5465 -3.6556 37 1 0.4096 3.7529 -3.4448 38 1 0.3271 6.7614 -4.0369 39 1 0.0986 6.6210 -5.7967 40 1 -0.7969 5.5481 -4.6947 41 1 3.4224 5.0532 -5.2025 42 1 2.5626 6.3327 -6.0929 43 1 2.7910 6.4725 -4.3333 44 1 0.9870 6.1834 -8.5011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590756778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:42 Heat of formation + Delta-G solvation = -103.134148 kcal Electronic energy + Delta-G solvation = -26740.799582 eV Core-core repulsion = 23013.592575 eV Total energy + Delta-G solvation = -3727.207007 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.71973 -36.68951 -36.54054 -36.16029 -35.46726 -35.21922 -32.37055 -31.55533 -29.20375 -27.02735 -26.48789 -25.63492 -25.11877 -23.80383 -22.06346 -19.74230 -19.54233 -18.91590 -17.45875 -17.27251 -16.54669 -16.00678 -15.61815 -15.33838 -15.18341 -14.65089 -14.50049 -14.40469 -13.79657 -13.73389 -13.17544 -13.12386 -12.83931 -12.78209 -12.40759 -12.19483 -12.10977 -12.04773 -11.72429 -11.48222 -11.39319 -11.29244 -11.00631 -10.99311 -10.91492 -10.78022 -10.56230 -10.26389 -10.20362 -9.94310 -9.56085 -9.49485 -9.11059 -8.94424 -8.58920 -8.30381 -5.93602 -4.04002 0.86284 2.33029 2.74394 3.28807 3.35057 3.39016 3.42603 4.06640 4.08956 4.32996 4.46827 4.53013 4.65628 4.79102 4.81734 4.96637 5.06118 5.13242 5.20599 5.31591 5.39871 5.45056 5.52522 5.63842 5.75208 5.91846 5.95795 5.97023 6.33434 6.55553 6.81626 6.86846 6.89228 6.95932 6.99140 7.12020 7.40916 7.59308 7.78567 8.03478 8.06397 8.20180 8.44157 8.95067 9.60512 11.07912 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.004814 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.605277 B = 5815.569199 C = 6993.573680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.122 3.878 3 N -0.619 5.619 4 C 0.101 3.899 5 C -0.138 4.138 6 C 0.119 3.881 7 H 0.129 0.871 8 N -1.110 6.110 9 S 2.585 3.415 10 O -0.963 6.963 11 O -0.962 6.962 12 C -0.570 4.570 13 C 0.082 3.918 14 C -0.163 4.163 15 C -0.163 4.163 16 C -0.495 4.495 17 H 0.060 0.940 18 C 0.063 3.937 19 N -0.887 5.887 20 Si 0.896 3.104 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.497 3.503 25 O -0.501 6.501 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.413 0.587 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.026 0.974 39 H 0.095 0.905 40 H 0.035 0.965 41 H 0.037 0.963 42 H 0.095 0.905 43 H 0.026 0.974 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.598 -8.736 20.369 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.001 3.999 3 N -0.355 5.355 4 C -0.022 4.022 5 C -0.177 4.177 6 C 0.007 3.993 7 H 0.146 0.854 8 N -0.866 5.866 9 S 2.684 3.316 10 O -0.953 6.953 11 O -0.952 6.952 12 C -0.705 4.705 13 C 0.080 3.920 14 C -0.221 4.221 15 C -0.220 4.220 16 C -0.535 4.535 17 H 0.078 0.922 18 C -0.138 4.138 19 N -0.525 5.525 20 Si 0.724 3.276 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.203 1.203 24 C 0.281 3.719 25 O -0.373 6.373 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.090 0.910 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.246 0.754 36 H 0.148 0.852 37 H 0.135 0.865 38 H 0.045 0.955 39 H 0.114 0.886 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.113 0.887 43 H 0.045 0.955 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.757 -7.957 19.496 21.237 hybrid contribution -0.700 -1.414 -0.535 1.666 sum 2.057 -9.370 18.961 21.249 Atomic orbital electron populations 1.22175 0.95710 1.02392 1.02709 1.21358 0.94489 0.80974 1.03127 1.48313 1.66153 1.13854 1.07195 1.22119 0.99632 0.92874 0.87575 1.22939 1.01106 0.99323 0.94327 1.21413 0.91705 0.86700 0.99514 0.85363 1.55868 1.37704 1.52923 1.40056 1.06002 0.74596 0.75937 0.75080 1.93555 1.52697 1.64495 1.84585 1.93537 1.39751 1.76118 1.85806 1.30490 1.10965 1.14539 1.14460 1.17933 0.93425 0.92654 0.87995 1.22279 0.98118 0.99007 1.02681 1.22270 0.96866 0.99687 1.03218 1.20934 1.48982 0.93166 0.90403 0.92218 1.24924 0.95061 0.95197 0.98592 1.69790 1.50064 1.12197 1.20483 0.86600 0.78788 0.80953 0.81297 1.20353 1.21275 1.20285 1.21473 0.77664 0.87906 0.84850 1.90826 1.51356 1.74647 1.20499 0.92510 0.91848 0.91440 0.89819 0.90464 0.90054 0.91000 0.87984 0.88487 0.75365 0.85227 0.86508 0.95544 0.88642 0.94554 0.94430 0.88682 0.95494 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.24 37.15 0.38 -1.06 16 2 C 0.12 1.03 6.65 -4.04 -0.03 1.00 16 3 N -0.62 -6.04 2.93 -172.42 -0.51 -6.54 16 4 C 0.10 0.63 7.35 -3.12 -0.02 0.61 16 5 C -0.14 -0.97 6.83 -25.10 -0.17 -1.14 16 6 C 0.12 1.42 3.49 -67.94 -0.24 1.18 16 7 H 0.13 1.61 7.56 -51.93 -0.39 1.22 16 8 N -1.11 -14.99 5.40 -4.90 -0.03 -15.01 16 9 S 2.58 49.34 4.47 -107.50 -0.48 48.86 16 10 O -0.96 -20.50 15.70 -57.54 -0.90 -21.40 16 11 O -0.96 -20.24 15.06 -57.54 -0.87 -21.11 16 12 C -0.57 -12.27 4.54 37.16 0.17 -12.10 16 13 C 0.08 2.11 0.52 -155.66 -0.08 2.02 16 14 C -0.16 -4.18 7.77 37.16 0.29 -3.89 16 15 C -0.16 -4.16 7.78 37.16 0.29 -3.87 16 16 C -0.50 -13.77 8.01 -34.45 -0.28 -14.04 16 17 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 18 C 0.06 1.76 5.15 -17.82 -0.09 1.67 16 19 N -0.89 -24.98 9.35 55.43 0.52 -24.46 16 20 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.50 6.73 7.66 -10.86 -0.08 6.65 16 25 O -0.50 -8.98 15.65 5.56 0.09 -8.89 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.82 7.93 -51.93 -0.41 0.41 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.41 4.46 8.84 -34.47 -0.30 4.16 16 36 H 0.13 2.76 6.67 -51.92 -0.35 2.41 16 37 H 0.12 2.42 8.14 -51.92 -0.42 2.00 16 38 H 0.03 0.64 5.46 -51.93 -0.28 0.35 16 39 H 0.09 2.61 6.07 -51.93 -0.32 2.30 16 40 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.09 2.60 6.07 -51.93 -0.32 2.28 16 43 H 0.03 0.64 5.47 -51.92 -0.28 0.36 16 44 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 355.01 15.07 5.35 5.35 Total: -1.00 -35.11 355.01 -8.55 -43.66 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -6.84 Total: 5.93 kcal Atomic # 6 Polarization: -23.12 SS G_CDS: 0.14 Total: -22.98 kcal Atomic # 7 Polarization: -46.01 SS G_CDS: -0.01 Total: -46.02 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -1.68 Total: -51.40 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 49.34 SS G_CDS: -0.48 Total: 48.86 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.11 -8.55 -43.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590756778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.473 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds