Wall clock time and date at job start Fri Apr 10 2020 18:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47438 * 2 1 4 4 C 1.46765 * 124.34952 * 90.00306 * 3 2 1 5 5 C 1.54479 * 105.47083 * 162.98323 * 4 3 2 6 6 C 1.54627 * 101.76721 * 25.41421 * 5 4 3 7 7 H 1.08998 * 110.48501 * 94.01603 * 6 5 4 8 8 N 1.46508 * 110.48632 * 216.52545 * 6 5 4 9 9 S 1.65597 * 119.99800 * 213.16498 * 8 6 5 10 10 O 1.42105 * 104.27294 * 308.92186 * 9 8 6 11 11 O 1.42102 * 104.27693 * 181.07151 * 9 8 6 12 12 C 1.81396 * 104.45473 * 64.99705 * 9 8 6 13 13 C 1.52997 * 109.47360 * 180.02562 * 12 9 8 14 14 C 1.53006 * 109.47127 * 59.99690 * 13 12 9 15 15 C 1.52999 * 109.46991 * 300.00375 * 13 12 9 16 16 C 1.50697 * 109.47466 * 180.02562 * 13 12 9 17 17 H 1.08002 * 119.99362 * 359.97438 * 16 13 12 18 18 C 1.37867 * 120.00258 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00203 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 120.00057 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47094 * 89.99954 * 20 18 16 22 22 H 1.48499 * 109.46907 * 209.99714 * 20 18 16 23 23 H 1.48495 * 109.46933 * 330.00015 * 20 18 16 24 24 C 1.34662 * 124.31189 * 270.12839 * 3 2 1 25 25 O 1.21273 * 125.07385 * 0.42320 * 24 3 2 26 26 H 1.08996 * 109.47187 * 59.99599 * 1 2 3 27 27 H 1.09000 * 109.47051 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46671 * 300.00024 * 1 2 3 29 29 H 1.09005 * 109.46671 * 239.99976 * 2 1 3 30 30 H 1.08996 * 109.47187 * 120.00401 * 2 1 3 31 31 H 1.08994 * 110.24392 * 43.98436 * 4 3 2 32 32 H 1.08996 * 110.24318 * 281.97658 * 4 3 2 33 33 H 1.09006 * 110.96873 * 267.29389 * 5 4 3 34 34 H 1.09001 * 110.99915 * 143.55186 * 5 4 3 35 35 H 0.97001 * 119.99921 * 33.15585 * 8 6 5 36 36 H 1.09002 * 109.47134 * 59.99844 * 12 9 8 37 37 H 1.09001 * 109.46704 * 300.00130 * 12 9 8 38 38 H 1.09001 * 109.46801 * 300.00272 * 14 13 12 39 39 H 1.09001 * 109.46998 * 59.99868 * 14 13 12 40 40 H 1.09000 * 109.47050 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.47160 * 179.97438 * 15 13 12 42 42 H 1.09002 * 109.46719 * 299.99711 * 15 13 12 43 43 H 1.08993 * 109.47839 * 59.99553 * 15 13 12 44 44 H 0.97006 * 120.00645 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 3.1746 3.3440 0.7486 6 6 2.7696 3.4753 -0.7379 7 1 1.9764 4.2138 -0.8533 8 7 3.9299 3.8388 -1.5552 9 16 3.7346 4.8018 -2.8882 10 8 2.6889 4.1780 -3.6209 11 8 5.0423 4.9170 -3.4320 12 6 3.1809 6.3943 -2.2191 13 6 2.9624 7.3817 -3.3672 14 6 1.8983 6.8305 -4.3184 15 6 4.2750 7.5770 -4.1286 16 6 2.5030 8.7050 -2.8112 17 1 2.3789 8.8290 -1.7456 18 6 2.2402 9.7567 -3.6630 19 7 2.3909 9.6054 -4.9607 20 14 1.6701 11.3967 -2.9739 21 1 2.8509 12.2498 -2.6855 22 1 0.7999 12.0755 -3.9675 23 1 0.9064 11.1685 -1.7210 24 6 2.2691 2.0977 -1.1123 25 8 2.1174 1.6984 -2.2473 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.8325 1.5530 1.9382 32 1 1.3639 2.5308 1.6429 33 1 4.2334 3.1031 0.8447 34 1 2.9316 4.2517 1.3009 35 1 4.8125 3.5156 -1.3155 36 1 3.9388 6.7868 -1.5411 37 1 2.2455 6.2552 -1.6770 38 1 2.2310 5.8736 -4.7204 39 1 0.9631 6.6912 -3.7759 40 1 1.7429 7.5337 -5.1366 41 1 4.1192 8.2801 -4.9468 42 1 5.0331 7.9697 -3.4509 43 1 4.6077 6.6202 -4.5307 44 1 2.2063 10.3455 -5.5600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590756779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:45 Heat of formation + Delta-G solvation = -101.451630 kcal Electronic energy + Delta-G solvation = -26333.564530 eV Core-core repulsion = 22606.430483 eV Total energy + Delta-G solvation = -3727.134047 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.59600 -36.50654 -36.43683 -36.24979 -35.48689 -35.14844 -32.46161 -31.65676 -29.12956 -26.89014 -26.62011 -25.68423 -25.21542 -23.76241 -22.08815 -19.69614 -19.63432 -18.76175 -17.54315 -16.96031 -16.54078 -16.27002 -15.89192 -15.22631 -14.92842 -14.73156 -14.37732 -14.18775 -13.86037 -13.69710 -13.43208 -13.05056 -12.97368 -12.61925 -12.48781 -12.41638 -12.12700 -11.98865 -11.59545 -11.44073 -11.31219 -11.25172 -11.08298 -11.04977 -10.92166 -10.67657 -10.64020 -10.33424 -10.23313 -10.05151 -9.62838 -9.51497 -9.07385 -8.89115 -8.65319 -8.39184 -6.02330 -4.14715 0.86640 2.51081 2.77353 3.24900 3.25852 3.33257 3.34685 4.08298 4.17028 4.33938 4.41735 4.56089 4.65263 4.80596 4.86030 4.89970 5.01333 5.11517 5.18449 5.22928 5.42960 5.44131 5.51596 5.63571 5.65996 5.71046 5.91619 5.94115 6.37971 6.39037 6.71919 6.82446 6.89156 6.94487 7.02015 7.10489 7.34222 7.52895 7.68679 8.00463 8.11280 8.16173 8.34110 8.83643 9.50661 10.98927 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020706 B = 0.003728 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.938173 B = 7509.531789 C = 7911.181431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.627 5.627 4 C 0.104 3.896 5 C -0.138 4.138 6 C 0.124 3.876 7 H 0.122 0.878 8 N -1.110 6.110 9 S 2.586 3.414 10 O -0.940 6.940 11 O -0.963 6.963 12 C -0.584 4.584 13 C 0.083 3.917 14 C -0.164 4.164 15 C -0.164 4.164 16 C -0.502 4.502 17 H 0.059 0.941 18 C 0.064 3.936 19 N -0.883 5.883 20 Si 0.896 3.104 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.499 3.501 25 O -0.488 6.488 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.414 0.586 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.029 0.971 39 H 0.036 0.964 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.036 0.964 43 H 0.028 0.972 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.055 -14.910 15.852 21.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.002 3.998 3 N -0.365 5.365 4 C -0.019 4.019 5 C -0.178 4.178 6 C 0.012 3.988 7 H 0.140 0.860 8 N -0.865 5.865 9 S 2.683 3.317 10 O -0.930 6.930 11 O -0.953 6.953 12 C -0.717 4.717 13 C 0.080 3.920 14 C -0.222 4.222 15 C -0.222 4.222 16 C -0.542 4.542 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.521 5.521 20 Si 0.724 3.276 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.200 1.200 24 C 0.282 3.718 25 O -0.359 6.359 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.247 0.753 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.055 0.945 43 H 0.046 0.954 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.197 -15.349 14.071 20.824 hybrid contribution -0.171 1.165 1.232 1.704 sum -0.369 -14.184 15.303 20.869 Atomic orbital electron populations 1.22179 0.95828 1.02280 1.02681 1.21316 0.94403 0.81162 1.02959 1.48388 1.67188 1.13726 1.07214 1.22065 0.99550 0.92664 0.87643 1.22989 1.01311 0.99423 0.94031 1.21321 0.89967 0.95820 0.91728 0.86041 1.55874 1.14030 1.67984 1.48593 1.06012 0.75118 0.76835 0.73738 1.93630 1.58242 1.73483 1.67621 1.93555 1.39237 1.87153 1.75375 1.30565 1.10581 1.18395 1.12151 1.17924 0.93702 0.92277 0.88073 1.22276 0.98455 0.99314 1.02124 1.22274 0.96390 1.00987 1.02505 1.20931 1.45503 0.94574 0.93154 0.92321 1.24941 0.95206 0.98726 0.94884 1.69805 1.48510 1.31737 1.02021 0.86538 0.78637 0.83711 0.78746 1.20668 1.21144 1.19979 1.21392 0.77588 0.88024 0.84768 1.90815 1.50342 1.74318 1.20428 0.91940 0.91537 0.92441 0.90083 0.90524 0.90162 0.90760 0.88979 0.87989 0.75314 0.86217 0.86689 0.95172 0.94518 0.88692 0.88644 0.94482 0.95362 0.92735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 2 C 0.12 1.04 6.65 -4.04 -0.03 1.01 16 3 N -0.63 -6.30 2.94 -172.35 -0.51 -6.81 16 4 C 0.10 0.65 7.35 -3.12 -0.02 0.63 16 5 C -0.14 -0.94 6.88 -25.10 -0.17 -1.12 16 6 C 0.12 1.48 3.35 -67.94 -0.23 1.25 16 7 H 0.12 1.38 7.25 -51.93 -0.38 1.01 16 8 N -1.11 -15.42 5.44 -4.90 -0.03 -15.44 16 9 S 2.59 49.56 4.43 -107.50 -0.48 49.08 16 10 O -0.94 -21.32 14.73 -60.79 -0.90 -22.22 16 11 O -0.96 -20.82 15.70 -57.54 -0.90 -21.73 16 12 C -0.58 -11.19 4.92 37.16 0.18 -11.00 16 13 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 14 C -0.16 -4.11 7.78 37.16 0.29 -3.82 16 15 C -0.16 -4.08 7.77 37.16 0.29 -3.79 16 16 C -0.50 -13.09 8.01 -34.45 -0.28 -13.37 16 17 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 18 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 19 N -0.88 -24.20 9.35 55.43 0.52 -23.69 16 20 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 21 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C 0.50 7.18 7.68 -10.75 -0.08 7.10 16 25 O -0.49 -9.53 16.90 2.50 0.04 -9.49 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.80 7.94 -51.93 -0.41 0.39 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.53 7.89 -51.93 -0.41 0.12 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.41 4.72 8.63 -34.47 -0.30 4.42 16 36 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 37 H 0.11 1.94 7.49 -51.92 -0.39 1.55 16 38 H 0.03 0.73 5.46 -51.93 -0.28 0.44 16 39 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 41 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 44 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 356.37 15.07 5.37 5.37 Total: -1.00 -36.25 356.37 -8.59 -44.84 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -6.85 Total: 5.13 kcal Atomic # 6 Polarization: -20.71 SS G_CDS: 0.16 Total: -20.55 kcal Atomic # 7 Polarization: -45.92 SS G_CDS: -0.01 Total: -45.94 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -1.76 Total: -53.43 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 49.56 SS G_CDS: -0.48 Total: 49.08 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.25 -8.59 -44.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590756779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.609 kcal (2) G-P(sol) polarization free energy of solvation -36.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds