Wall clock time and date at job start Fri Apr 10 2020 18:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.47438 * 2 1 4 4 C 1.46765 * 124.34952 * 90.00306 * 3 2 1 5 5 C 1.54479 * 105.47083 * 162.98323 * 4 3 2 6 6 C 1.54627 * 101.76721 * 25.41421 * 5 4 3 7 7 H 1.08998 * 110.48501 * 94.01603 * 6 5 4 8 8 N 1.46508 * 110.48632 * 216.52545 * 6 5 4 9 9 S 1.65597 * 119.99800 * 213.16498 * 8 6 5 10 10 O 1.42105 * 104.27294 * 308.92186 * 9 8 6 11 11 O 1.42102 * 104.27693 * 181.07151 * 9 8 6 12 12 C 1.81396 * 104.45473 * 64.99705 * 9 8 6 13 13 C 1.52997 * 109.47360 * 180.02562 * 12 9 8 14 14 C 1.53006 * 109.47127 * 59.99690 * 13 12 9 15 15 C 1.52999 * 109.46991 * 300.00375 * 13 12 9 16 16 C 1.50697 * 109.47466 * 180.02562 * 13 12 9 17 17 H 1.08002 * 119.99362 * 359.97438 * 16 13 12 18 18 C 1.37867 * 120.00258 * 180.02562 * 16 13 12 19 19 N 1.31511 * 120.00203 * 359.97438 * 18 16 13 20 20 Si 1.86805 * 120.00057 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.47094 * 89.99954 * 20 18 16 22 22 H 1.48499 * 109.46907 * 209.99714 * 20 18 16 23 23 H 1.48495 * 109.46933 * 330.00015 * 20 18 16 24 24 C 1.34662 * 124.31189 * 270.12839 * 3 2 1 25 25 O 1.21273 * 125.07385 * 0.42320 * 24 3 2 26 26 H 1.08996 * 109.47187 * 59.99599 * 1 2 3 27 27 H 1.09000 * 109.47051 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46671 * 300.00024 * 1 2 3 29 29 H 1.09005 * 109.46671 * 239.99976 * 2 1 3 30 30 H 1.08996 * 109.47187 * 120.00401 * 2 1 3 31 31 H 1.08994 * 110.24392 * 43.98436 * 4 3 2 32 32 H 1.08996 * 110.24318 * 281.97658 * 4 3 2 33 33 H 1.09006 * 110.96873 * 267.29389 * 5 4 3 34 34 H 1.09001 * 110.99915 * 143.55186 * 5 4 3 35 35 H 0.97001 * 119.99921 * 33.15585 * 8 6 5 36 36 H 1.09002 * 109.47134 * 59.99844 * 12 9 8 37 37 H 1.09001 * 109.46704 * 300.00130 * 12 9 8 38 38 H 1.09001 * 109.46801 * 300.00272 * 14 13 12 39 39 H 1.09001 * 109.46998 * 59.99868 * 14 13 12 40 40 H 1.09000 * 109.47050 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.47160 * 179.97438 * 15 13 12 42 42 H 1.09002 * 109.46719 * 299.99711 * 15 13 12 43 43 H 1.08993 * 109.47839 * 59.99553 * 15 13 12 44 44 H 0.97006 * 120.00645 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2945 2.1619 1.2117 5 6 3.1746 3.3440 0.7486 6 6 2.7696 3.4753 -0.7379 7 1 1.9764 4.2138 -0.8533 8 7 3.9299 3.8388 -1.5552 9 16 3.7346 4.8018 -2.8882 10 8 2.6889 4.1780 -3.6209 11 8 5.0423 4.9170 -3.4320 12 6 3.1809 6.3943 -2.2191 13 6 2.9624 7.3817 -3.3672 14 6 1.8983 6.8305 -4.3184 15 6 4.2750 7.5770 -4.1286 16 6 2.5030 8.7050 -2.8112 17 1 2.3789 8.8290 -1.7456 18 6 2.2402 9.7567 -3.6630 19 7 2.3909 9.6054 -4.9607 20 14 1.6701 11.3967 -2.9739 21 1 2.8509 12.2498 -2.6855 22 1 0.7999 12.0755 -3.9675 23 1 0.9064 11.1685 -1.7210 24 6 2.2691 2.0977 -1.1123 25 8 2.1174 1.6984 -2.2473 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 2.8325 1.5530 1.9382 32 1 1.3639 2.5308 1.6429 33 1 4.2334 3.1031 0.8447 34 1 2.9316 4.2517 1.3009 35 1 4.8125 3.5156 -1.3155 36 1 3.9388 6.7868 -1.5411 37 1 2.2455 6.2552 -1.6770 38 1 2.2310 5.8736 -4.7204 39 1 0.9631 6.6912 -3.7759 40 1 1.7429 7.5337 -5.1366 41 1 4.1192 8.2801 -4.9468 42 1 5.0331 7.9697 -3.4509 43 1 4.6077 6.6202 -4.5307 44 1 2.2063 10.3455 -5.5600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590756779.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:44 Heat of formation + Delta-G solvation = -129.012301 kcal Electronic energy + Delta-G solvation = -26334.759650 eV Core-core repulsion = 22606.430483 eV Total energy + Delta-G solvation = -3728.329167 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.47972 -38.12361 -38.06217 -37.52329 -36.85212 -36.35806 -33.62323 -33.26233 -29.84715 -28.35093 -27.71898 -27.68543 -27.22382 -24.42609 -22.81687 -21.43842 -20.65234 -20.14277 -18.91621 -18.06399 -17.80506 -17.41424 -17.23762 -16.83313 -16.55969 -16.26578 -15.21741 -15.19356 -14.99140 -14.71449 -14.57800 -14.42868 -14.40689 -14.15532 -13.79152 -13.57226 -13.20000 -13.09480 -12.95833 -12.85760 -12.75215 -12.74438 -12.51981 -12.42788 -12.16403 -12.12673 -12.10173 -12.06274 -11.86431 -11.70961 -11.55361 -11.29235 -10.59177 -10.40157 -10.12529 -9.67273 -8.00759 -6.19950 -0.63412 1.43644 1.46738 1.48191 1.57024 1.90831 2.11789 2.46323 2.87385 3.21774 3.34554 3.41363 3.43798 3.92570 3.97721 4.02572 4.14442 4.18690 4.26394 4.33514 4.51572 4.60596 4.72030 4.75931 4.86192 4.86869 4.88280 4.97350 5.00194 5.08793 5.09498 5.20224 5.29403 5.39408 5.50687 5.66302 5.67869 5.96580 5.98654 6.12103 6.14655 6.34577 6.85542 7.19211 7.48669 8.99348 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.020706 B = 0.003728 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.938173 B = 7509.531789 C = 7911.181431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.116 3.884 3 N -0.619 5.619 4 C 0.099 3.901 5 C -0.125 4.125 6 C 0.109 3.891 7 H 0.126 0.874 8 N -1.094 6.094 9 S 2.599 3.401 10 O -0.982 6.982 11 O -0.994 6.994 12 C -0.578 4.578 13 C 0.069 3.931 14 C -0.160 4.160 15 C -0.161 4.161 16 C -0.514 4.514 17 H 0.070 0.930 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.957 3.043 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.263 1.263 24 C 0.481 3.519 25 O -0.559 6.559 26 H 0.026 0.974 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.132 0.868 35 H 0.426 0.574 36 H 0.148 0.852 37 H 0.141 0.859 38 H 0.028 0.972 39 H 0.040 0.960 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.044 0.956 43 H 0.027 0.973 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.009 -15.017 20.294 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.005 4.005 3 N -0.354 5.354 4 C -0.023 4.023 5 C -0.164 4.164 6 C -0.002 4.002 7 H 0.143 0.857 8 N -0.853 5.853 9 S 2.697 3.303 10 O -0.972 6.972 11 O -0.985 6.985 12 C -0.711 4.711 13 C 0.067 3.933 14 C -0.218 4.218 15 C -0.219 4.219 16 C -0.553 4.553 17 H 0.088 0.912 18 C -0.185 4.185 19 N -0.550 5.550 20 Si 0.783 3.217 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.187 1.187 24 C 0.266 3.734 25 O -0.436 6.436 26 H 0.045 0.955 27 H 0.101 0.899 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.113 0.887 33 H 0.126 0.874 34 H 0.150 0.850 35 H 0.263 0.737 36 H 0.166 0.834 37 H 0.159 0.841 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.046 0.954 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.141 -15.470 18.584 24.180 hybrid contribution -0.205 1.100 -0.084 1.122 sum -0.346 -14.370 18.500 23.428 Atomic orbital electron populations 1.22134 0.95478 1.03150 1.01659 1.21514 0.94710 0.80612 1.03692 1.48568 1.65197 1.14146 1.07493 1.22465 1.00982 0.92477 0.86378 1.23120 1.02436 1.01136 0.89729 1.21736 0.89367 0.94517 0.94627 0.85692 1.55291 1.15559 1.66928 1.47569 1.05247 0.73748 0.77079 0.74261 1.93584 1.59500 1.74384 1.69727 1.93500 1.40335 1.87703 1.76926 1.30416 1.12994 1.16912 1.10826 1.17921 0.92632 0.93295 0.89412 1.22211 0.99244 0.98520 1.01809 1.22215 0.97298 1.00300 1.02049 1.21303 1.45057 0.95240 0.93707 0.91187 1.25731 0.95529 1.02072 0.95135 1.69966 1.49392 1.32441 1.03160 0.85571 0.78129 0.79743 0.78258 1.20349 1.21674 1.18723 1.21956 0.77343 0.89369 0.84753 1.90773 1.53626 1.75902 1.23250 0.95474 0.89850 0.90757 0.92553 0.86523 0.86800 0.88673 0.87409 0.84958 0.73723 0.83431 0.84119 0.95369 0.94111 0.91207 0.91158 0.93709 0.95382 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.24 71.98 0.74 -1.68 16 2 C 0.12 1.75 6.65 86.38 0.57 2.33 16 3 N -0.62 -11.04 2.94 -817.66 -2.40 -13.44 16 4 C 0.10 0.75 7.35 86.83 0.64 1.39 16 5 C -0.13 -1.12 6.88 31.65 0.22 -0.90 16 6 C 0.11 2.37 3.35 44.98 0.15 2.52 16 7 H 0.13 2.59 7.25 -2.39 -0.02 2.57 16 8 N -1.09 -28.80 5.44 -169.41 -0.92 -29.72 16 9 S 2.60 99.15 4.43 -56.49 -0.25 98.90 16 10 O -0.98 -45.93 14.73 -124.54 -1.83 -47.76 16 11 O -0.99 -43.27 15.70 -127.65 -2.00 -45.28 16 12 C -0.58 -21.14 4.92 71.98 0.35 -20.78 16 13 C 0.07 3.35 0.52 -52.93 -0.03 3.33 16 14 C -0.16 -8.19 7.78 71.98 0.56 -7.63 16 15 C -0.16 -8.11 7.77 71.98 0.56 -7.55 16 16 C -0.51 -26.22 8.01 25.60 0.21 -26.01 16 17 H 0.07 3.34 7.74 -2.91 -0.02 3.31 16 18 C 0.01 0.76 5.15 84.65 0.44 1.20 16 19 N -0.91 -50.90 9.35 21.44 0.20 -50.70 16 20 Si 0.96 41.57 29.54 68.60 2.03 43.59 16 21 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 24 C 0.48 13.64 7.68 87.86 0.67 14.32 16 25 O -0.56 -22.89 16.90 -0.08 0.00 -22.89 16 26 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.06 1.14 7.94 -2.38 -0.02 1.12 16 30 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.11 0.68 7.89 -2.38 -0.02 0.66 16 34 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.43 8.95 8.63 -96.74 -0.84 8.12 16 36 H 0.15 4.54 8.14 -2.39 -0.02 4.52 16 37 H 0.14 4.37 7.49 -2.39 -0.02 4.36 16 38 H 0.03 1.41 5.46 -2.39 -0.01 1.40 16 39 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 41 H 0.07 3.88 6.07 -2.39 -0.01 3.86 16 42 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.03 1.37 5.46 -2.39 -0.01 1.36 16 44 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 Total: -1.00 -83.61 356.37 0.06 -83.55 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 0.17 Total: 23.23 kcal Atomic # 6 Polarization: -44.56 SS G_CDS: 5.08 Total: -39.48 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -3.12 Total: -93.87 kcal Atomic # 8 Polarization: -112.09 SS G_CDS: -3.84 Total: -115.93 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 16 Polarization: 99.15 SS G_CDS: -0.25 Total: 98.90 kcal Total: -83.61 0.06 -83.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590756779.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.463 kcal (2) G-P(sol) polarization free energy of solvation -83.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds