Wall clock time and date at job start Fri Apr 10 2020 18:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46505 * 119.99957 * 2 1 4 4 S 1.65598 * 119.99969 * 179.97438 * 2 1 3 5 5 O 1.42099 * 104.27743 * 333.92790 * 4 2 1 6 6 O 1.42104 * 104.27534 * 206.07806 * 4 2 1 7 7 C 1.81399 * 104.45081 * 90.00406 * 4 2 1 8 8 C 1.50698 * 109.47102 * 179.97438 * 7 4 2 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 4 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 4 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 C 1.50701 * 109.47085 * 295.13082 * 14 13 12 16 16 H 1.07998 * 120.00293 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99472 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00682 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99519 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47133 * 60.00060 * 19 17 15 21 21 H 1.48503 * 109.46942 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47295 * 299.99976 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 24 24 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 25 25 H 1.08993 * 109.47322 * 270.00930 * 1 2 3 26 26 H 1.09002 * 109.46772 * 30.00945 * 1 2 3 27 27 H 1.08997 * 109.46832 * 149.99965 * 1 2 3 28 28 H 1.09000 * 109.46461 * 239.99727 * 3 2 1 29 29 H 1.09006 * 109.46763 * 359.97438 * 3 2 1 30 30 H 1.08996 * 109.47003 * 119.99643 * 3 2 1 31 31 H 1.09001 * 109.46570 * 59.99831 * 7 4 2 32 32 H 1.09001 * 109.47092 * 300.00079 * 7 4 2 33 33 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 34 34 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 35 35 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 36 36 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 37 37 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 38 38 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 39 39 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 40 40 H 0.97001 * 120.00836 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.50232 * 301.42239 * 23 13 12 42 42 H 1.09007 * 109.52628 * 181.33900 * 23 13 12 43 43 H 1.08994 * 109.58580 * 353.38021 * 24 10 8 44 44 H 1.09006 * 109.57831 * 113.65514 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.3970 -2.3558 0.6063 6 8 3.5395 -1.1188 0.6059 7 6 2.5195 -1.8269 -1.7558 8 6 3.2706 -3.1267 -1.8871 9 8 3.6185 -3.7290 -0.8936 10 7 3.5558 -3.6198 -3.1086 11 6 4.2879 -4.8854 -3.2527 12 6 3.4822 -5.8244 -4.1561 13 6 3.1832 -5.1133 -5.4815 14 6 2.4070 -6.0576 -6.4016 15 6 3.2770 -7.2337 -6.7637 16 1 4.2830 -7.3008 -6.3766 17 6 2.7884 -8.2242 -7.5891 18 7 1.5637 -8.1424 -8.0609 19 14 3.8670 -9.6816 -8.0386 20 1 4.2605 -10.4058 -6.8032 21 1 3.1136 -10.5983 -8.9316 22 1 5.0846 -9.1992 -8.7387 23 6 2.3468 -3.8599 -5.2145 24 6 3.1415 -2.9012 -4.3213 25 1 -0.3633 0.0002 1.0276 26 1 -0.3633 0.8899 -0.5140 27 1 -0.3633 -0.8900 -0.5138 28 1 2.8242 1.3264 -0.8900 29 1 1.4892 2.0973 -0.0005 30 1 2.8241 1.3265 0.8900 31 1 3.0868 -1.0296 -2.2361 32 1 1.5453 -1.9197 -2.2359 33 1 5.2630 -4.6946 -3.7009 34 1 4.4197 -5.3449 -2.2732 35 1 4.0590 -6.7293 -4.3470 36 1 2.5451 -6.0865 -3.6649 37 1 4.1205 -4.8292 -5.9599 38 1 1.5129 -6.4114 -5.8883 39 1 2.1189 -5.5259 -7.3084 40 1 1.2201 -8.8390 -8.6419 41 1 1.4204 -4.1405 -4.7136 42 1 2.1149 -3.3685 -6.1595 43 1 2.5148 -2.0527 -4.0471 44 1 4.0233 -2.5467 -4.8551 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592819130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:06 Heat of formation + Delta-G solvation = -110.766038 kcal Electronic energy + Delta-G solvation = -25441.804811 eV Core-core repulsion = 21714.266861 eV Total energy + Delta-G solvation = -3727.537950 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.28341 -37.61827 -37.33220 -36.60179 -36.00942 -34.22507 -32.33393 -31.51974 -30.05740 -28.51499 -27.95266 -25.10327 -24.72959 -22.96895 -22.08032 -20.26309 -19.22738 -18.82722 -18.15896 -17.00019 -16.91367 -16.69150 -16.29102 -15.72510 -15.53588 -14.76425 -14.68319 -14.57950 -14.08863 -13.73415 -13.61821 -13.47580 -13.24126 -13.05869 -13.00034 -12.68712 -12.57397 -12.33784 -12.21917 -11.98039 -11.97055 -11.83305 -11.31413 -11.25099 -11.13169 -10.84080 -10.74220 -10.52001 -10.38642 -10.13177 -9.72720 -9.50802 -9.37339 -9.05844 -8.58595 -8.39473 -6.04516 -4.06774 -0.13372 2.28470 2.35244 2.83144 3.30150 3.35190 3.37210 3.61409 3.84626 3.96572 4.33174 4.41830 4.49223 4.74514 4.88411 4.90441 4.98537 5.12680 5.19031 5.26887 5.31454 5.37637 5.39195 5.44997 5.48492 5.51475 5.69146 5.83904 5.94261 6.05040 6.17645 6.22307 6.40201 6.48516 6.86332 6.91587 7.02158 7.23191 7.59311 7.73366 7.83236 7.94129 8.36482 8.99246 9.57524 11.06700 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030582 B = 0.002669 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.359957 B =10487.525168 C =10773.565572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.013 6.013 3 C 0.088 3.912 4 S 2.644 3.356 5 O -0.935 6.935 6 O -0.938 6.938 7 C -0.674 4.674 8 C 0.541 3.459 9 O -0.545 6.545 10 N -0.590 5.590 11 C 0.105 3.895 12 C -0.119 4.119 13 C -0.082 4.082 14 C 0.029 3.971 15 C -0.519 4.519 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.132 4.132 24 C 0.102 3.898 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.157 0.843 32 H 0.159 0.841 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.261 0.739 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.155 21.308 11.557 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.852 5.852 3 C -0.057 4.057 4 S 2.732 3.268 5 O -0.925 6.925 6 O -0.928 6.928 7 C -0.801 4.801 8 C 0.326 3.674 9 O -0.424 6.424 10 N -0.322 5.322 11 C -0.017 4.017 12 C -0.157 4.157 13 C -0.101 4.101 14 C -0.008 4.008 15 C -0.557 4.557 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.535 5.535 19 Si 0.718 3.282 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.170 4.170 24 C -0.021 4.021 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.175 0.825 32 H 0.177 0.823 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.833 20.433 12.668 24.056 hybrid contribution 0.276 -0.558 -1.404 1.536 sum -0.557 19.875 11.264 22.852 Atomic orbital electron populations 1.21571 0.77977 1.03151 1.02795 1.57633 1.15534 1.22089 1.89994 1.21578 0.96756 0.85076 1.02323 1.04377 0.73932 0.72507 0.76021 1.93595 1.64814 1.62139 1.71926 1.93574 1.44216 1.82907 1.72056 1.31147 1.10906 1.05882 1.32196 1.19079 0.79487 0.84603 0.84198 1.90829 1.54694 1.60726 1.36182 1.48054 1.55187 1.23839 1.05079 1.21945 0.94717 0.83050 1.01957 1.21981 1.00338 0.98291 0.95110 1.21272 0.98806 0.94137 0.95869 1.19113 0.95138 0.93123 0.93469 1.21189 0.99642 1.05795 1.29070 0.92609 1.25012 0.94995 0.98275 0.96111 1.69938 1.15462 1.34337 1.33763 0.86694 0.80517 0.82567 0.78442 1.20206 1.21341 1.20288 1.22064 0.99043 0.97016 0.98870 1.21979 0.99599 0.95008 0.85513 0.91989 0.90775 0.90850 0.92264 0.90021 0.91154 0.82483 0.82304 0.91227 0.89150 0.89348 0.92121 0.92169 0.96599 0.96595 0.92940 0.91800 0.90725 0.90356 0.90840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.52 10.17 59.85 0.61 1.13 16 2 N -1.01 -7.78 3.52 -129.20 -0.45 -8.23 16 3 C 0.09 0.48 10.26 59.85 0.61 1.09 16 4 S 2.64 31.36 4.51 -107.50 -0.49 30.87 16 5 O -0.93 -14.40 17.09 -57.55 -0.98 -15.38 16 6 O -0.94 -13.99 17.10 -57.55 -0.98 -14.98 16 7 C -0.67 -6.41 5.01 36.00 0.18 -6.23 16 8 C 0.54 7.91 7.72 -10.99 -0.08 7.83 16 9 O -0.54 -10.04 15.28 5.56 0.08 -9.96 16 10 N -0.59 -8.29 2.97 -172.74 -0.51 -8.80 16 11 C 0.10 1.60 6.42 -3.71 -0.02 1.58 16 12 C -0.12 -2.11 5.21 -26.45 -0.14 -2.24 16 13 C -0.08 -1.51 2.10 -90.42 -0.19 -1.70 16 14 C 0.03 0.69 4.45 -27.88 -0.12 0.56 16 15 C -0.52 -13.87 8.39 -34.44 -0.29 -14.16 16 16 H 0.06 1.44 7.06 -52.49 -0.37 1.07 16 17 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.26 13.28 55.43 0.74 -25.52 16 19 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.13 -1.91 5.37 -26.59 -0.14 -2.05 16 24 C 0.10 1.16 6.34 -3.68 -0.02 1.14 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.23 7.92 -51.93 -0.41 -0.18 16 27 H 0.07 0.40 7.79 -51.93 -0.40 0.00 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.25 7.79 -51.93 -0.40 -0.16 16 30 H 0.07 0.45 7.90 -51.93 -0.41 0.04 16 31 H 0.16 0.92 7.94 -51.92 -0.41 0.51 16 32 H 0.16 1.05 7.69 -51.92 -0.40 0.65 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 1.44 7.00 -51.93 -0.36 1.08 16 35 H 0.09 1.67 6.93 -51.93 -0.36 1.31 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 43 H 0.08 0.64 5.93 -51.93 -0.31 0.33 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 365.20 15.07 5.50 5.50 Total: -1.00 -36.77 365.20 -9.03 -45.80 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -7.21 Total: -3.92 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 0.29 Total: -11.55 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -0.23 Total: -42.56 kcal Atomic # 8 Polarization: -38.44 SS G_CDS: -1.88 Total: -40.32 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 31.36 SS G_CDS: -0.49 Total: 30.87 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.77 -9.03 -45.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592819130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.963 kcal (2) G-P(sol) polarization free energy of solvation -36.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds