Wall clock time and date at job start Fri Apr 10 2020 18:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46505 * 119.99957 * 2 1 4 4 S 1.65598 * 119.99969 * 179.97438 * 2 1 3 5 5 O 1.42099 * 104.27743 * 333.92790 * 4 2 1 6 6 O 1.42104 * 104.27534 * 206.07806 * 4 2 1 7 7 C 1.81399 * 104.45081 * 90.00406 * 4 2 1 8 8 C 1.50698 * 109.47102 * 179.97438 * 7 4 2 9 9 O 1.21279 * 119.99808 * 0.02562 * 8 7 4 10 10 N 1.34778 * 120.00023 * 180.02562 * 8 7 4 11 11 C 1.46919 * 120.63255 * 179.97438 * 10 8 7 12 12 C 1.53195 * 108.89273 * 126.34238 * 11 10 8 13 13 C 1.53346 * 109.14901 * 54.57640 * 12 11 10 14 14 C 1.53004 * 109.41904 * 178.67276 * 13 12 11 15 15 C 1.50701 * 109.47085 * 295.13082 * 14 13 12 16 16 H 1.07998 * 120.00293 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99472 * 179.97438 * 15 14 13 18 18 N 1.31505 * 120.00682 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99519 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47133 * 60.00060 * 19 17 15 21 21 H 1.48503 * 109.46942 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47295 * 299.99976 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 13 12 11 24 24 C 1.46933 * 120.62741 * 0.02562 * 10 8 7 25 25 H 1.08993 * 109.47322 * 270.00930 * 1 2 3 26 26 H 1.09002 * 109.46772 * 30.00945 * 1 2 3 27 27 H 1.08997 * 109.46832 * 149.99965 * 1 2 3 28 28 H 1.09000 * 109.46461 * 239.99727 * 3 2 1 29 29 H 1.09006 * 109.46763 * 359.97438 * 3 2 1 30 30 H 1.08996 * 109.47003 * 119.99643 * 3 2 1 31 31 H 1.09001 * 109.46570 * 59.99831 * 7 4 2 32 32 H 1.09001 * 109.47092 * 300.00079 * 7 4 2 33 33 H 1.09002 * 109.58751 * 246.20189 * 11 10 8 34 34 H 1.08996 * 109.58750 * 6.48373 * 11 10 8 35 35 H 1.08997 * 109.49914 * 174.65962 * 12 11 10 36 36 H 1.09002 * 109.49585 * 294.75599 * 12 11 10 37 37 H 1.09001 * 109.42242 * 58.75065 * 13 12 11 38 38 H 1.09001 * 109.46592 * 55.13132 * 14 13 12 39 39 H 1.08997 * 109.47133 * 175.12697 * 14 13 12 40 40 H 0.97001 * 120.00836 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.50232 * 301.42239 * 23 13 12 42 42 H 1.09007 * 109.52628 * 181.33900 * 23 13 12 43 43 H 1.08994 * 109.58580 * 353.38021 * 24 10 8 44 44 H 1.09006 * 109.57831 * 113.65514 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 16 2.2930 -1.4341 0.0006 5 8 1.3970 -2.3558 0.6063 6 8 3.5395 -1.1188 0.6059 7 6 2.5195 -1.8269 -1.7558 8 6 3.2706 -3.1267 -1.8871 9 8 3.6185 -3.7290 -0.8936 10 7 3.5558 -3.6198 -3.1086 11 6 4.2879 -4.8854 -3.2527 12 6 3.4822 -5.8244 -4.1561 13 6 3.1832 -5.1133 -5.4815 14 6 2.4070 -6.0576 -6.4016 15 6 3.2770 -7.2337 -6.7637 16 1 4.2830 -7.3008 -6.3766 17 6 2.7884 -8.2242 -7.5891 18 7 1.5637 -8.1424 -8.0609 19 14 3.8670 -9.6816 -8.0386 20 1 4.2605 -10.4058 -6.8032 21 1 3.1136 -10.5983 -8.9316 22 1 5.0846 -9.1992 -8.7387 23 6 2.3468 -3.8599 -5.2145 24 6 3.1415 -2.9012 -4.3213 25 1 -0.3633 0.0002 1.0276 26 1 -0.3633 0.8899 -0.5140 27 1 -0.3633 -0.8900 -0.5138 28 1 2.8242 1.3264 -0.8900 29 1 1.4892 2.0973 -0.0005 30 1 2.8241 1.3265 0.8900 31 1 3.0868 -1.0296 -2.2361 32 1 1.5453 -1.9197 -2.2359 33 1 5.2630 -4.6946 -3.7009 34 1 4.4197 -5.3449 -2.2732 35 1 4.0590 -6.7293 -4.3470 36 1 2.5451 -6.0865 -3.6649 37 1 4.1205 -4.8292 -5.9599 38 1 1.5129 -6.4114 -5.8883 39 1 2.1189 -5.5259 -7.3084 40 1 1.2201 -8.8390 -8.6419 41 1 1.4204 -4.1405 -4.7136 42 1 2.1149 -3.3685 -6.1595 43 1 2.5148 -2.0527 -4.0471 44 1 4.0233 -2.5467 -4.8551 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592819130.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:05 Heat of formation + Delta-G solvation = -138.632342 kcal Electronic energy + Delta-G solvation = -25443.013185 eV Core-core repulsion = 21714.266861 eV Total energy + Delta-G solvation = -3728.746324 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.42547 -38.91699 -38.32173 -37.25320 -36.87620 -35.81991 -34.12742 -32.65363 -31.15722 -29.59316 -28.91576 -26.38359 -25.60192 -24.20194 -23.63356 -21.59180 -20.31250 -19.80863 -19.04789 -18.44422 -17.94826 -17.81096 -17.51052 -16.67367 -16.54322 -16.50912 -15.44911 -15.37430 -15.22996 -15.03576 -14.77186 -14.62137 -14.42730 -14.09943 -13.93687 -13.74689 -13.47667 -13.42921 -13.30190 -13.21791 -13.02272 -12.79305 -12.58406 -12.50367 -12.49507 -12.36235 -12.24012 -12.03038 -11.84014 -11.45971 -11.32565 -11.06725 -10.82835 -10.52240 -10.03482 -9.79058 -8.17866 -6.26567 -0.97889 1.22752 1.40041 1.41679 1.49052 1.57580 1.86730 2.41342 2.76823 3.05888 3.09431 3.16046 3.83298 3.83610 3.89847 4.00504 4.06601 4.14922 4.16669 4.38803 4.51888 4.52880 4.61242 4.65504 4.77410 4.77890 4.85235 4.92961 5.01405 5.04304 5.06299 5.07402 5.24963 5.31683 5.36649 5.48783 5.56308 5.57244 5.80126 5.89843 6.16118 6.29391 6.75388 6.90307 7.42052 8.93559 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030582 B = 0.002669 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.359957 B =10487.525168 C =10773.565572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -1.003 6.003 3 C 0.075 3.925 4 S 2.641 3.359 5 O -0.985 6.985 6 O -0.980 6.980 7 C -0.658 4.658 8 C 0.529 3.471 9 O -0.594 6.594 10 N -0.592 5.592 11 C 0.111 3.889 12 C -0.112 4.112 13 C -0.076 4.076 14 C 0.033 3.967 15 C -0.530 4.530 16 H 0.062 0.938 17 C -0.001 4.001 18 N -0.935 5.935 19 Si 0.955 3.045 20 H -0.271 1.271 21 H -0.287 1.287 22 H -0.266 1.266 23 C -0.128 4.128 24 C 0.102 3.898 25 H 0.053 0.947 26 H 0.110 0.890 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.053 0.947 31 H 0.206 0.794 32 H 0.197 0.803 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.066 0.934 38 H -0.016 1.016 39 H -0.005 1.005 40 H 0.261 0.739 41 H 0.054 0.946 42 H 0.088 0.912 43 H 0.125 0.875 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.642 24.038 10.571 26.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.845 5.845 3 C -0.069 4.069 4 S 2.733 3.267 5 O -0.975 6.975 6 O -0.970 6.970 7 C -0.787 4.787 8 C 0.316 3.684 9 O -0.476 6.476 10 N -0.322 5.322 11 C -0.011 4.011 12 C -0.151 4.151 13 C -0.094 4.094 14 C -0.004 4.004 15 C -0.568 4.568 16 H 0.080 0.920 17 C -0.198 4.198 18 N -0.575 5.575 19 Si 0.780 3.220 20 H -0.196 1.196 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.167 4.167 24 C -0.019 4.019 25 H 0.072 0.928 26 H 0.128 0.872 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.130 0.870 30 H 0.072 0.928 31 H 0.223 0.777 32 H 0.214 0.786 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.085 0.915 38 H 0.002 0.998 39 H 0.013 0.987 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.143 0.857 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.316 23.193 11.702 25.980 hybrid contribution 0.064 -1.383 -1.140 1.793 sum -0.252 21.809 10.563 24.234 Atomic orbital electron populations 1.21843 0.76648 1.05025 1.03034 1.57281 1.16147 1.21221 1.89834 1.21885 0.97622 0.84632 1.02744 1.03968 0.72909 0.72811 0.77028 1.93532 1.65667 1.64251 1.74019 1.93517 1.46011 1.83550 1.73942 1.31037 1.12864 1.04323 1.30505 1.19855 0.79128 0.85901 0.83492 1.90818 1.56532 1.62519 1.37765 1.48157 1.54730 1.23298 1.06027 1.21736 0.95231 0.83553 1.00623 1.21831 0.99511 0.98372 0.95358 1.21128 0.98844 0.94829 0.94634 1.19012 0.94335 0.93596 0.93458 1.21668 1.00195 1.06583 1.28400 0.91980 1.25897 0.96265 1.01316 0.96333 1.70072 1.17272 1.35424 1.34782 0.85649 0.78957 0.79088 0.78260 1.19617 1.21258 1.19055 1.21992 0.98376 0.95861 1.00425 1.22227 1.00924 0.94859 0.83860 0.92780 0.87191 0.90643 0.89967 0.87050 0.92846 0.77715 0.78606 0.89299 0.90441 0.91275 0.94093 0.91540 0.99808 0.98705 0.93001 0.92738 0.89360 0.85685 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.70 10.17 127.77 1.30 2.00 16 2 N -1.00 -12.83 3.52 -562.67 -1.98 -14.81 16 3 C 0.08 0.58 10.26 127.77 1.31 1.89 16 4 S 2.64 59.57 4.51 -56.49 -0.25 59.32 16 5 O -0.98 -30.80 17.09 -127.64 -2.18 -32.98 16 6 O -0.98 -29.20 17.10 -127.64 -2.18 -31.38 16 7 C -0.66 -9.91 5.01 71.24 0.36 -9.56 16 8 C 0.53 14.34 7.72 87.66 0.68 15.02 16 9 O -0.59 -21.97 15.28 -3.03 -0.05 -22.01 16 10 N -0.59 -15.02 2.97 -818.81 -2.43 -17.46 16 11 C 0.11 3.28 6.42 86.36 0.55 3.84 16 12 C -0.11 -4.01 5.21 30.78 0.16 -3.85 16 13 C -0.08 -2.73 2.10 -10.66 -0.02 -2.75 16 14 C 0.03 1.63 4.45 29.85 0.13 1.76 16 15 C -0.53 -28.76 8.39 25.60 0.21 -28.55 16 16 H 0.06 3.21 7.06 -2.91 -0.02 3.19 16 17 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 18 N -0.93 -56.04 13.28 21.45 0.28 -55.75 16 19 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 23 C -0.13 -3.39 5.37 30.69 0.16 -3.23 16 24 C 0.10 1.86 6.34 86.38 0.55 2.41 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.11 0.20 7.92 -2.39 -0.02 0.18 16 27 H 0.07 0.65 7.79 -2.39 -0.02 0.63 16 28 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.11 0.21 7.79 -2.38 -0.02 0.19 16 30 H 0.05 0.60 7.90 -2.39 -0.02 0.58 16 31 H 0.21 1.10 7.94 -2.39 -0.02 1.08 16 32 H 0.20 1.53 7.69 -2.39 -0.02 1.51 16 33 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.08 2.51 7.00 -2.39 -0.02 2.49 16 35 H 0.07 2.68 6.93 -2.39 -0.02 2.66 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 39 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 41 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 43 H 0.13 1.16 5.93 -2.39 -0.01 1.15 16 44 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -86.04 365.20 0.07 -85.97 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: 0.98 Total: 3.95 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 5.86 Total: -20.59 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -4.13 Total: -88.02 kcal Atomic # 8 Polarization: -81.97 SS G_CDS: -4.41 Total: -86.38 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: 59.57 SS G_CDS: -0.25 Total: 59.32 kcal Total: -86.04 0.07 -85.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592819130.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.662 kcal (2) G-P(sol) polarization free energy of solvation -86.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds