Wall clock time and date at job start Fri Apr 10 2020 18:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.34777 * 120.00015 * 84.99707 * 12 2 1 14 14 O 1.21282 * 120.00331 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99692 * 180.02562 * 13 12 2 16 16 C 1.53001 * 109.46811 * 180.02562 * 15 13 12 17 17 C 1.53048 * 109.45943 * 295.06577 * 16 15 13 18 18 C 1.53190 * 109.31155 * 178.61459 * 17 16 15 19 19 N 1.46925 * 108.77555 * 54.63559 * 18 17 16 20 20 S 1.65602 * 120.63111 * 126.40720 * 19 18 17 21 21 C 1.81392 * 104.45307 * 269.98140 * 20 19 18 22 22 O 1.42106 * 104.27565 * 26.05343 * 20 19 18 23 23 O 1.42106 * 104.27626 * 153.90662 * 20 19 18 24 24 C 1.46926 * 118.74077 * 306.39329 * 19 18 17 25 25 C 1.53040 * 109.46049 * 174.99963 * 16 15 13 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.97005 * 119.99880 * 265.00058 * 12 2 1 31 31 H 1.09003 * 109.46726 * 300.00059 * 15 13 12 32 32 H 1.08992 * 109.47335 * 60.00408 * 15 13 12 33 33 H 1.08999 * 109.46392 * 55.02219 * 16 15 13 34 34 H 1.09001 * 109.49454 * 298.57167 * 17 16 15 35 35 H 1.09000 * 109.49280 * 58.66720 * 17 16 15 36 36 H 1.09004 * 109.58582 * 294.84966 * 18 17 16 37 37 H 1.09005 * 109.70166 * 174.49340 * 18 17 16 38 38 H 1.09005 * 109.47250 * 60.00220 * 21 20 19 39 39 H 1.09000 * 109.47579 * 179.97438 * 21 20 19 40 40 H 1.09000 * 109.47039 * 299.99839 * 21 20 19 41 41 H 1.09002 * 109.58084 * 293.81738 * 24 19 18 42 42 H 1.09001 * 109.58697 * 173.39442 * 24 19 18 43 43 H 1.08996 * 109.49740 * 301.33844 * 25 16 15 44 44 H 1.09004 * 109.49571 * 61.43077 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 2.1470 -0.0180 -2.3571 14 8 1.8590 1.1588 -2.4114 15 6 2.6488 -0.7286 -3.5878 16 6 2.7010 0.2548 -4.7588 17 6 1.2818 0.7124 -5.1039 18 6 1.3409 1.7230 -6.2536 19 7 2.0701 1.1191 -7.3771 20 16 1.3959 1.0643 -8.8886 21 6 0.4979 -0.5113 -8.9269 22 8 0.4873 2.1567 -8.9069 23 8 2.5111 1.0241 -9.7685 24 6 3.4090 0.5650 -7.1341 25 6 3.3268 -0.4326 -5.9744 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1611 3.4845 30 1 2.2490 -1.6317 -1.1527 31 1 3.6480 -1.1211 -3.3986 32 1 1.9760 -1.5503 -3.8327 33 1 3.3034 1.1195 -4.4804 34 1 0.6855 -0.1484 -5.4063 35 1 0.8283 1.1811 -4.2305 36 1 1.8596 2.6229 -5.9228 37 1 0.3297 1.9794 -6.5698 38 1 -0.2596 -0.5169 -8.1431 39 1 0.0167 -0.6318 -9.8975 40 1 1.1965 -1.3318 -8.7630 41 1 4.0963 1.3705 -6.8752 42 1 3.7617 0.0550 -8.0306 43 1 4.3287 -0.7790 -5.7208 44 1 2.7112 -1.2826 -6.2687 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594257793.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:22 Heat of formation + Delta-G solvation = -148.330527 kcal Electronic energy + Delta-G solvation = -25379.128744 eV Core-core repulsion = 21649.961875 eV Total energy + Delta-G solvation = -3729.166869 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.82213 -39.19199 -38.22006 -37.00817 -36.67378 -34.54212 -34.25123 -31.93663 -31.18021 -30.25130 -28.86262 -27.31894 -24.55839 -24.19275 -22.67753 -21.19473 -20.89819 -19.75586 -18.79208 -18.63914 -17.37571 -17.27350 -17.11583 -17.05349 -16.22024 -15.87963 -15.53446 -15.34952 -15.00461 -14.78391 -14.56541 -14.34372 -13.99987 -13.96170 -13.88740 -13.74066 -13.31529 -13.16668 -13.13025 -12.95095 -12.85973 -12.75580 -12.69115 -12.40495 -12.26103 -12.14800 -12.07874 -12.03999 -11.65433 -11.43861 -11.19976 -11.07015 -10.63240 -10.38408 -9.88460 -9.63003 -8.16619 -6.33989 -0.67661 1.44933 1.45748 1.56145 1.66488 1.98640 2.37855 2.76688 2.97533 3.13854 3.17806 3.66325 3.85327 3.95780 4.03877 4.14486 4.18797 4.33394 4.40095 4.52170 4.60959 4.70184 4.73935 4.77944 4.93108 4.93690 4.95978 5.02286 5.04075 5.10148 5.13773 5.20623 5.33934 5.41934 5.49070 5.59556 5.66197 5.73991 5.77650 5.96385 6.14191 6.75817 7.09602 7.35043 7.70707 8.89430 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037465 B = 0.002452 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.187523 B =11417.195578 C =11709.585368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.271 3.729 3 H -0.006 1.006 4 C -0.546 4.546 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.263 1.263 11 H -0.288 1.288 12 N -0.711 5.711 13 C 0.491 3.509 14 O -0.596 6.596 15 C -0.124 4.124 16 C -0.068 4.068 17 C -0.133 4.133 18 C 0.128 3.872 19 N -0.999 5.999 20 S 2.611 3.389 21 C -0.650 4.650 22 O -1.001 7.001 23 O -0.992 6.992 24 C 0.116 3.884 25 C -0.121 4.121 26 H 0.039 0.961 27 H 0.062 0.938 28 H 0.013 0.987 29 H 0.264 0.736 30 H 0.404 0.596 31 H 0.113 0.887 32 H 0.117 0.883 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.091 0.909 38 H 0.143 0.857 39 H 0.144 0.856 40 H 0.153 0.847 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.385 -9.444 -21.998 24.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.012 0.988 4 C -0.584 4.584 5 H 0.091 0.909 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.196 1.196 10 H -0.187 1.187 11 H -0.214 1.214 12 N -0.360 5.360 13 C 0.279 3.721 14 O -0.478 6.478 15 C -0.164 4.164 16 C -0.087 4.087 17 C -0.172 4.172 18 C 0.002 3.998 19 N -0.837 5.837 20 S 2.709 3.291 21 C -0.804 4.804 22 O -0.992 6.992 23 O -0.983 6.983 24 C -0.008 4.008 25 C -0.160 4.160 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.032 0.968 29 H 0.073 0.927 30 H 0.239 0.761 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.161 0.839 39 H 0.162 0.838 40 H 0.171 0.829 41 H 0.082 0.918 42 H 0.124 0.876 43 H 0.113 0.887 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.210 -7.803 -22.563 23.976 hybrid contribution -0.095 -0.548 1.634 1.726 sum 2.115 -8.351 -20.929 22.632 Atomic orbital electron populations 1.21879 0.98503 0.99290 0.99423 1.18248 0.90945 0.91763 0.82332 0.98767 1.21590 1.32412 1.13469 0.90953 0.90865 1.25818 0.94958 0.95579 1.02405 1.70062 1.37173 1.23990 1.24507 0.85357 0.79017 0.78017 0.78011 1.19641 1.18737 1.21429 1.46342 1.65529 1.14221 1.09951 1.21630 0.77313 0.87314 0.85848 1.90611 1.52913 1.18471 1.85794 1.21781 1.04401 0.99533 0.90667 1.20809 0.96705 0.97390 0.93840 1.22053 0.97613 0.99685 0.97840 1.21308 0.96666 0.95592 0.86221 1.57597 1.26609 1.73596 1.25909 1.04619 0.74154 0.77948 0.72339 1.30369 1.15846 1.21154 1.13029 1.93554 1.67327 1.52256 1.86060 1.93550 1.51709 1.88505 1.64504 1.21570 0.82139 0.97145 0.99994 1.21991 1.02827 0.98158 0.93033 0.94182 0.91906 0.96830 0.92654 0.76105 0.86865 0.86501 0.92871 0.89955 0.92021 0.92631 0.89106 0.83872 0.83806 0.82883 0.91835 0.87582 0.88729 0.88988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 9.26 71.98 0.67 -5.90 16 2 C 0.27 13.73 2.56 44.24 0.11 13.84 16 3 H -0.01 -0.34 7.58 -2.39 -0.02 -0.36 16 4 C -0.55 -28.39 8.73 25.60 0.22 -28.17 16 5 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -52.58 11.32 21.45 0.24 -52.34 16 8 Si 0.97 41.45 29.54 68.60 2.03 43.48 16 9 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 10 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 11 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 12 N -0.71 -27.54 5.07 -446.10 -2.26 -29.80 16 13 C 0.49 17.47 7.50 87.66 0.66 18.13 16 14 O -0.60 -26.82 13.63 -3.04 -0.04 -26.86 16 15 C -0.12 -2.61 5.18 29.85 0.15 -2.46 16 16 C -0.07 -1.39 1.80 -10.76 -0.02 -1.41 16 17 C -0.13 -2.93 5.11 30.67 0.16 -2.77 16 18 C 0.13 2.69 6.32 86.36 0.55 3.23 16 19 N -1.00 -17.04 3.22 -513.07 -1.65 -18.69 16 20 S 2.61 43.55 6.05 -56.49 -0.34 43.21 16 21 C -0.65 -4.22 10.99 113.37 1.25 -2.97 16 22 O -1.00 -25.22 16.72 -127.65 -2.13 -27.36 16 23 O -0.99 -22.29 16.72 -127.65 -2.13 -24.42 16 24 C 0.12 1.66 6.31 86.36 0.55 2.20 16 25 C -0.12 -1.44 5.36 30.67 0.16 -1.28 16 26 H 0.04 1.81 8.14 -2.39 -0.02 1.80 16 27 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 28 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 29 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 30 H 0.40 12.83 8.54 -92.70 -0.79 12.04 16 31 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.05 1.39 7.96 -2.39 -0.02 1.37 16 34 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.89 5.92 -2.39 -0.01 1.88 16 36 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.09 1.83 7.09 -2.38 -0.02 1.81 16 38 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.15 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.11 1.17 7.10 -2.39 -0.02 1.15 16 43 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.09 0.67 8.14 -2.38 -0.02 0.66 16 Total: -1.00 -79.02 362.03 -1.19 -80.21 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: 0.20 Total: 19.02 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 4.90 Total: -6.45 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -3.67 Total: -100.83 kcal Atomic # 8 Polarization: -74.33 SS G_CDS: -4.31 Total: -78.64 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Atomic # 16 Polarization: 43.55 SS G_CDS: -0.34 Total: 43.21 kcal Total: -79.02 -1.19 -80.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594257793.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.119 kcal (2) G-P(sol) polarization free energy of solvation -79.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds