Wall clock time and date at job start Fri Apr 10 2020 18:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50699 * 119.99964 * 2 1 4 4 N 1.46494 * 109.47177 * 125.36057 * 3 2 1 5 5 C 1.46504 * 120.00091 * 275.68487 * 4 3 2 6 6 C 1.50699 * 109.47012 * 275.00061 * 5 4 3 7 7 H 1.08002 * 119.99982 * 359.97438 * 6 5 4 8 8 C 1.37873 * 120.00026 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00071 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00283 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46930 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47354 * 119.99649 * 10 8 6 13 13 H 1.48497 * 109.47141 * 240.00248 * 10 8 6 14 14 S 1.65600 * 120.00103 * 95.68322 * 4 3 2 15 15 O 1.42108 * 106.40290 * 197.62888 * 14 4 3 16 16 O 1.42099 * 106.40434 * 330.54945 * 14 4 3 17 17 N 1.65601 * 107.21671 * 84.09313 * 14 4 3 18 18 C 1.46925 * 120.62788 * 275.63976 * 17 14 4 19 19 C 1.53625 * 108.54039 * 126.37209 * 18 17 14 20 20 C 1.53041 * 109.24158 * 54.85883 * 19 18 17 21 21 O 1.42899 * 109.44717 * 178.49969 * 20 19 18 22 22 C 1.42905 * 113.99874 * 270.05824 * 21 20 19 23 23 C 1.53038 * 109.53802 * 298.51132 * 20 19 18 24 24 C 1.46921 * 120.63298 * 95.92826 * 17 14 4 25 25 H 1.07998 * 120.00314 * 180.02562 * 1 2 3 26 26 H 1.08009 * 119.99872 * 0.02562 * 1 2 3 27 27 H 1.07997 * 119.99958 * 180.02562 * 2 1 3 28 28 H 1.09004 * 109.47474 * 5.35764 * 3 2 1 29 29 H 1.09005 * 109.47189 * 245.36248 * 3 2 1 30 30 H 1.08995 * 109.46942 * 34.99701 * 5 4 3 31 31 H 1.09001 * 109.47405 * 154.99908 * 5 4 3 32 32 H 0.96997 * 119.99899 * 180.02562 * 9 8 6 33 33 H 1.08999 * 109.59462 * 246.20329 * 18 17 14 34 34 H 1.09000 * 109.58557 * 6.63518 * 18 17 14 35 35 H 1.09005 * 109.63530 * 294.87049 * 19 18 17 36 36 H 1.09004 * 109.43707 * 174.72654 * 19 18 17 37 37 H 1.08996 * 109.46114 * 58.53317 * 20 19 18 38 38 H 1.09003 * 109.47253 * 300.00436 * 22 21 20 39 39 H 1.08996 * 109.46806 * 60.00307 * 22 21 20 40 40 H 1.08997 * 109.47138 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.49713 * 301.41033 * 23 20 19 42 42 H 1.09006 * 109.52621 * 181.33498 * 23 20 19 43 43 H 1.09001 * 109.59016 * 353.37112 * 24 17 14 44 44 H 1.09008 * 109.58873 * 113.65547 * 24 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9998 1.3284 1.1264 5 6 2.5382 1.7400 2.4544 6 6 2.5955 3.2420 2.5629 7 1 2.9417 3.8310 1.7264 8 6 2.2061 3.8643 3.7299 9 7 1.7850 3.1471 4.7487 10 14 2.2779 5.7261 3.8647 11 1 2.7852 6.2954 2.5903 12 1 0.9175 6.2555 4.1370 13 1 3.1887 6.1074 4.9738 14 16 4.5802 0.8893 0.8985 15 8 5.1101 0.6138 2.1881 16 8 4.5851 -0.0566 -0.1619 17 7 5.3840 2.2243 0.3382 18 6 5.3776 2.5559 -1.0931 19 6 4.8986 4.0064 -1.2564 20 6 5.7746 4.9260 -0.4025 21 8 5.3550 6.2806 -0.5782 22 6 6.0180 6.9606 -1.6460 23 6 5.6396 4.5375 1.0716 24 6 6.1223 3.0962 1.2620 25 1 -0.5400 -0.9353 0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3591 2.1314 0.0960 29 1 2.6162 1.4056 -0.9341 30 1 1.5119 1.4041 2.6026 31 1 3.1794 1.2960 3.2159 32 1 1.5107 3.5849 5.5696 33 1 6.3849 2.4533 -1.4966 34 1 4.7002 1.8844 -1.6207 35 1 3.8611 4.0882 -0.9321 36 1 4.9770 4.2986 -2.3036 37 1 6.8152 4.8252 -0.7108 38 1 7.0910 6.9784 -1.4548 39 1 5.8247 6.4398 -2.5838 40 1 5.6443 7.9823 -1.7137 41 1 4.5952 4.6144 1.3739 42 1 6.2452 5.2077 1.6819 43 1 5.9366 2.7812 2.2889 44 1 7.1894 3.0348 1.0483 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594775920.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:31 Heat of formation + Delta-G solvation = -121.850358 kcal Electronic energy + Delta-G solvation = -27268.592724 eV Core-core repulsion = 23540.574122 eV Total energy + Delta-G solvation = -3728.018602 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.08028 -38.39486 -37.89030 -37.64384 -36.89008 -34.97957 -33.50932 -32.42308 -32.03816 -29.30109 -27.55934 -26.53528 -24.77155 -24.37527 -24.02730 -21.50370 -20.99360 -19.85817 -18.78116 -18.61244 -18.20298 -17.49313 -17.39915 -16.56715 -16.11978 -16.00764 -15.97761 -15.61120 -15.29604 -15.11839 -14.66701 -14.30528 -14.20971 -14.02209 -13.85449 -13.76632 -13.44185 -13.38275 -13.03390 -12.98639 -12.89444 -12.71378 -12.51481 -12.39203 -12.28893 -12.13662 -12.10200 -11.94903 -11.72663 -11.60214 -11.27327 -10.56893 -10.40991 -10.31695 -10.06998 -9.72810 -8.14466 -6.25907 -0.33475 1.37651 1.40210 1.44312 1.56021 2.00729 2.43160 2.56409 2.88701 3.18087 3.37462 3.66507 3.87587 3.94865 4.08023 4.15622 4.18481 4.31927 4.37160 4.41778 4.52927 4.59778 4.61273 4.66816 4.75089 4.80793 4.84138 4.91301 4.93646 4.97781 5.08156 5.23407 5.25386 5.32373 5.40595 5.49660 5.65652 5.74179 5.81620 5.84518 6.04524 6.15485 6.39572 6.87740 7.43817 8.94277 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.009234 B = 0.007827 C = 0.005420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3031.462315 B = 3576.629067 C = 5164.903523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.188 4.188 3 C 0.155 3.845 4 N -0.991 5.991 5 C 0.264 3.736 6 C -0.529 4.529 7 H 0.076 0.924 8 C 0.016 3.984 9 N -0.929 5.929 10 Si 0.946 3.054 11 H -0.258 1.258 12 H -0.284 1.284 13 H -0.283 1.283 14 S 2.792 3.208 15 O -1.013 7.013 16 O -1.000 7.000 17 N -1.002 6.002 18 C 0.122 3.878 19 C -0.151 4.151 20 C 0.098 3.902 21 O -0.414 6.414 22 C 0.025 3.975 23 C -0.139 4.139 24 C 0.132 3.868 25 H 0.114 0.886 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.018 0.982 31 H 0.016 0.984 32 H 0.263 0.737 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.052 0.948 39 H 0.054 0.946 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.260 3.517 -15.543 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.208 4.208 3 C 0.030 3.970 4 N -0.831 5.831 5 C 0.140 3.860 6 C -0.568 4.568 7 H 0.094 0.906 8 C -0.183 4.183 9 N -0.570 5.570 10 Si 0.772 3.228 11 H -0.182 1.182 12 H -0.210 1.210 13 H -0.209 1.209 14 S 2.802 3.198 15 O -0.997 6.997 16 O -0.984 6.984 17 N -0.843 5.843 18 C -0.002 4.002 19 C -0.190 4.190 20 C 0.040 3.960 21 O -0.333 6.333 22 C -0.071 4.071 23 C -0.179 4.179 24 C 0.006 3.994 25 H 0.132 0.868 26 H 0.121 0.879 27 H 0.120 0.880 28 H 0.100 0.900 29 H 0.109 0.891 30 H 0.036 0.964 31 H 0.034 0.966 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.091 0.909 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.456 2.748 -15.094 17.057 hybrid contribution -0.382 1.038 0.647 1.281 sum 7.074 3.786 -14.447 16.525 Atomic orbital electron populations 1.24011 0.95257 1.02847 0.98532 1.23417 0.97057 0.98724 1.01614 1.20340 0.93051 0.95957 0.87661 1.57653 1.25859 1.82922 1.16634 1.18684 0.94970 0.94592 0.77705 1.21884 1.43116 0.92339 0.99458 0.90594 1.25675 0.95003 1.02204 0.95461 1.70070 1.45154 1.37116 1.04631 0.85678 0.77578 0.80932 0.78626 1.18173 1.20960 1.20929 1.01412 0.72772 0.73783 0.71826 1.93519 1.79194 1.84638 1.42397 1.93525 1.87400 1.59733 1.57762 1.58040 1.65795 1.45065 1.15398 1.21679 1.03791 0.95959 0.78793 1.22459 1.00530 0.94562 1.01440 1.22042 0.98105 0.81205 0.94602 1.87953 1.65799 1.25433 1.54137 1.22956 0.97026 0.97587 0.89521 1.22063 1.03224 0.96052 0.96513 1.21362 0.96501 0.88618 0.92892 0.86806 0.87878 0.88030 0.89954 0.89074 0.96408 0.96609 0.92772 0.88302 0.89213 0.92390 0.88322 0.89724 0.92931 0.92745 0.89309 0.92122 0.90019 0.90901 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.71 14.32 67.78 0.97 -3.74 16 2 C -0.19 -6.10 9.84 25.65 0.25 -5.85 16 3 C 0.16 5.31 5.78 85.63 0.50 5.80 16 4 N -0.99 -40.96 2.81 -523.91 -1.47 -42.43 16 5 C 0.26 13.45 5.41 85.63 0.46 13.92 16 6 C -0.53 -27.55 9.31 25.60 0.24 -27.31 16 7 H 0.08 3.77 5.84 -2.91 -0.02 3.76 16 8 C 0.02 0.86 5.46 84.65 0.46 1.32 16 9 N -0.93 -54.48 13.29 21.45 0.28 -54.20 16 10 Si 0.95 43.16 29.54 68.60 2.03 45.18 16 11 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 12 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 13 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 14 S 2.79 110.54 6.02 -56.49 -0.34 110.20 16 15 O -1.01 -48.21 15.14 -128.00 -1.94 -50.15 16 16 O -1.00 -39.31 16.23 -128.00 -2.08 -41.39 16 17 N -1.00 -31.43 3.34 -512.29 -1.71 -33.14 16 18 C 0.12 2.84 6.39 86.51 0.55 3.40 16 19 C -0.15 -3.42 5.71 30.82 0.18 -3.25 16 20 C 0.10 2.38 2.57 30.62 0.08 2.46 16 21 O -0.41 -11.07 10.35 -148.98 -1.54 -12.61 16 22 C 0.03 0.43 10.82 113.37 1.23 1.66 16 23 C -0.14 -4.24 5.73 30.67 0.18 -4.07 16 24 C 0.13 4.01 6.40 86.36 0.55 4.56 16 25 H 0.11 2.68 8.06 -2.91 -0.02 2.65 16 26 H 0.10 2.76 7.84 -2.91 -0.02 2.74 16 27 H 0.10 3.38 8.06 -2.91 -0.02 3.35 16 28 H 0.08 2.84 7.77 -2.38 -0.02 2.82 16 29 H 0.09 2.63 7.17 -2.38 -0.02 2.61 16 30 H 0.02 0.97 8.11 -2.39 -0.02 0.95 16 31 H 0.02 0.92 6.87 -2.39 -0.02 0.90 16 32 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 33 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.09 2.02 6.71 -2.39 -0.02 2.01 16 35 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.10 1.66 7.84 -2.39 -0.02 1.64 16 37 H 0.08 1.58 7.79 -2.39 -0.02 1.56 16 38 H 0.05 0.74 8.08 -2.39 -0.02 0.72 16 39 H 0.05 0.75 7.84 -2.39 -0.02 0.73 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.35 16 41 H 0.06 2.33 6.07 -2.39 -0.01 2.32 16 42 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 43 H 0.07 2.69 6.97 -2.39 -0.02 2.67 16 44 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 Total: -1.00 -69.86 365.79 -0.15 -70.02 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: 0.97 Total: 19.62 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 5.64 Total: -11.11 kcal Atomic # 7 Polarization: -126.87 SS G_CDS: -2.90 Total: -129.76 kcal Atomic # 8 Polarization: -98.59 SS G_CDS: -5.56 Total: -104.15 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 110.54 SS G_CDS: -0.34 Total: 110.20 kcal Total: -69.86 -0.15 -70.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594775920.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.835 kcal (2) G-P(sol) polarization free energy of solvation -69.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds