Wall clock time and date at job start Fri Apr 10 2020 18:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.47132 * 2 1 4 4 C 1.50702 * 109.47361 * 240.00129 * 2 1 3 5 5 O 1.21281 * 119.99874 * 264.99946 * 4 2 1 6 6 N 1.34770 * 119.99986 * 84.99973 * 4 2 1 7 7 C 1.46499 * 120.00242 * 180.02562 * 6 4 2 8 8 C 1.46503 * 120.00050 * 359.97438 * 6 4 2 9 9 S 1.81399 * 109.47068 * 119.99915 * 2 1 3 10 10 O 1.42101 * 110.54272 * 56.62823 * 9 2 1 11 11 O 1.42102 * 110.54259 * 193.37981 * 9 2 1 12 12 N 1.65600 * 104.45301 * 305.00000 * 9 2 1 13 13 C 1.46932 * 120.62844 * 89.99810 * 12 9 2 14 14 C 1.53191 * 108.77379 * 126.37280 * 13 12 9 15 15 C 1.53043 * 109.31240 * 54.63486 * 14 13 12 16 16 C 1.53035 * 109.53712 * 298.63338 * 15 14 13 17 17 H 1.09003 * 109.49985 * 301.38235 * 16 15 14 18 18 C 1.50700 * 109.49826 * 181.31918 * 16 15 14 19 19 H 1.08006 * 120.00402 * 240.00443 * 18 16 15 20 20 C 1.37872 * 120.00220 * 59.99602 * 18 16 15 21 21 N 1.31511 * 120.00053 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 120.00305 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47119 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47239 * 120.00455 * 22 20 18 25 25 H 1.48503 * 109.47288 * 240.00214 * 22 20 18 26 26 C 1.46928 * 120.63345 * 269.72363 * 12 9 2 27 27 H 1.08999 * 109.47361 * 299.99816 * 1 2 3 28 28 H 1.09002 * 109.47160 * 60.00141 * 1 2 3 29 29 H 1.09007 * 109.47132 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47297 * 89.99076 * 7 6 4 31 31 H 1.08996 * 109.47505 * 209.99674 * 7 6 4 32 32 H 1.09002 * 109.46793 * 329.99951 * 7 6 4 33 33 H 1.08997 * 109.47167 * 0.02562 * 8 6 4 34 34 H 1.08996 * 109.47183 * 120.00319 * 8 6 4 35 35 H 1.08998 * 109.47192 * 240.00113 * 8 6 4 36 36 H 1.08999 * 109.58666 * 246.15902 * 13 12 9 37 37 H 1.08996 * 109.58622 * 6.44400 * 13 12 9 38 38 H 1.08994 * 109.49794 * 174.58567 * 14 13 12 39 39 H 1.09001 * 109.49748 * 294.68541 * 14 13 12 40 40 H 1.08996 * 109.45968 * 58.65644 * 15 14 13 41 41 H 1.09003 * 109.45941 * 178.63060 * 15 14 13 42 42 H 0.97005 * 120.00302 * 179.97438 * 21 20 18 43 43 H 1.08996 * 109.58338 * 353.41728 * 26 12 9 44 44 H 1.09000 * 109.58446 * 113.83853 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3208 -1.8871 -1.1760 6 7 2.1611 -0.0380 -2.3914 7 6 2.6489 -0.7287 -3.5877 8 6 1.8121 1.3833 -2.4573 9 16 2.1346 -0.8551 1.4811 10 8 1.6107 -2.1745 1.5440 11 8 3.5213 -0.6077 1.6685 12 7 1.4052 -0.0656 2.7409 13 6 0.0990 -0.5094 3.2467 14 6 0.2077 -0.7399 4.7573 15 6 0.7426 0.5286 5.4257 16 6 2.1387 0.8430 4.8834 17 1 2.8023 0.0000 5.0762 18 6 2.6779 2.0738 5.5657 19 1 2.9358 2.9455 4.9824 20 6 2.8419 2.0873 6.9346 21 7 2.5282 1.0259 7.6449 22 14 3.5096 3.6131 7.7804 23 1 3.7838 4.6618 6.7653 24 1 2.5089 4.1167 8.7553 25 1 4.7675 3.2738 8.4929 26 6 2.0546 1.0882 3.3780 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8046 -1.1480 -4.1349 31 1 3.1796 -0.0212 -4.2247 32 1 3.3256 -1.5310 -3.2934 33 1 1.4713 1.7195 -1.4781 34 1 2.6886 1.9593 -2.7540 35 1 1.0171 1.5287 -3.1887 36 1 -0.6498 0.2572 3.0470 37 1 -0.1878 -1.4378 2.7530 38 1 -0.7768 -0.9764 5.1610 39 1 0.8893 -1.5682 4.9508 40 1 0.0736 1.3619 5.2112 41 1 0.7980 0.3755 6.5035 42 1 2.6439 1.0352 8.6080 43 1 3.0587 1.2121 2.9726 44 1 1.4685 1.9876 3.1892 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594807065.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:36 Heat of formation + Delta-G solvation = -126.243004 kcal Electronic energy + Delta-G solvation = -26543.887148 eV Core-core repulsion = 22815.678067 eV Total energy + Delta-G solvation = -3728.209082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30029 -39.32009 -38.36843 -37.11712 -36.83889 -35.25396 -34.49723 -32.67908 -31.85022 -29.03473 -27.52839 -27.00269 -25.39889 -25.11674 -23.32712 -21.35795 -20.89795 -19.55922 -19.10379 -18.45249 -18.11612 -17.89658 -17.14243 -16.80759 -16.65695 -16.38297 -15.45476 -15.17335 -15.09854 -14.81894 -14.72475 -14.42086 -14.22483 -14.10019 -13.84906 -13.56461 -13.43626 -13.31666 -13.27703 -13.25164 -13.07187 -12.91157 -12.86730 -12.78029 -12.64261 -12.45461 -11.82040 -11.75425 -11.71988 -11.54031 -11.28681 -11.02218 -10.71787 -10.39100 -9.90612 -9.73252 -8.03651 -6.19085 -0.98371 1.15818 1.44572 1.46862 1.52767 1.58012 1.86081 2.47509 2.80923 2.98817 3.05499 3.23561 3.61883 3.74366 3.86813 4.21330 4.30619 4.33772 4.37702 4.47024 4.55281 4.56287 4.62316 4.69687 4.70834 4.83550 4.86203 4.88231 4.91637 5.01542 5.07569 5.13914 5.27314 5.31920 5.38575 5.57584 5.69397 5.76994 5.98468 6.03020 6.22855 6.40994 6.70524 6.94297 7.49376 9.00628 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022212 B = 0.003814 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.297266 B = 7339.153919 C = 7834.785237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.612 4.612 3 H 0.193 0.807 4 C 0.527 3.473 5 O -0.581 6.581 6 N -0.603 5.603 7 C 0.074 3.926 8 C 0.053 3.947 9 S 2.620 3.380 10 O -0.974 6.974 11 O -0.996 6.996 12 N -0.991 5.991 13 C 0.119 3.881 14 C -0.130 4.130 15 C -0.101 4.101 16 C 0.031 3.969 17 H -0.023 1.023 18 C -0.529 4.529 19 H 0.066 0.934 20 C 0.009 3.991 21 N -0.919 5.919 22 Si 0.957 3.043 23 H -0.260 1.260 24 H -0.280 1.280 25 H -0.290 1.290 26 C 0.133 3.867 27 H 0.108 0.892 28 H 0.113 0.887 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.027 0.973 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.258 0.742 43 H 0.068 0.932 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.719 4.956 -22.287 24.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.725 4.725 3 H 0.210 0.790 4 C 0.313 3.687 5 O -0.462 6.462 6 N -0.334 5.334 7 C -0.068 4.068 8 C -0.087 4.087 9 S 2.715 3.285 10 O -0.964 6.964 11 O -0.986 6.986 12 N -0.830 5.830 13 C -0.005 4.005 14 C -0.170 4.170 15 C -0.140 4.140 16 C 0.011 3.989 17 H -0.005 1.005 18 C -0.568 4.568 19 H 0.084 0.916 20 C -0.189 4.189 21 N -0.559 5.559 22 Si 0.783 3.217 23 H -0.184 1.184 24 H -0.206 1.206 25 H -0.217 1.217 26 C 0.009 3.991 27 H 0.127 0.873 28 H 0.132 0.868 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.126 0.874 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.046 0.954 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.972 3.580 -22.090 23.756 hybrid contribution 0.649 0.638 0.785 1.202 sum -7.323 4.218 -21.305 22.920 Atomic orbital electron populations 1.21743 0.84521 1.05081 1.07768 1.30823 1.11744 1.16604 1.13295 0.79008 1.19753 0.77652 0.86184 0.85145 1.90852 1.52414 1.17354 1.85613 1.47786 1.63655 1.12874 1.09064 1.21929 1.00399 0.98644 0.85791 1.22430 1.03231 0.77589 1.05498 1.04568 0.73511 0.74470 0.75937 1.93490 1.80576 1.36044 1.86276 1.93519 1.33372 1.86342 1.85360 1.57537 1.32548 1.46214 1.46725 1.21712 0.83242 1.01176 0.94349 1.21908 1.00946 0.98167 0.95937 1.21376 0.96331 0.95177 1.01067 1.18867 0.93949 0.94882 0.91177 1.00498 1.21548 1.42485 1.00215 0.92515 0.91575 1.25782 0.95789 0.98877 0.98458 1.70065 1.49243 1.30210 1.06381 0.85523 0.77608 0.79995 0.78583 1.18358 1.20551 1.21655 1.21522 0.96604 0.86829 0.94192 0.87295 0.86837 0.91313 0.91034 0.87350 0.92546 0.88664 0.89615 0.88666 0.87471 0.88899 0.89591 0.95391 0.93030 0.92560 0.93251 0.91320 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 8.66 71.98 0.62 -1.36 16 2 C -0.61 -13.56 2.54 29.85 0.08 -13.49 16 3 H 0.19 2.75 6.32 -2.39 -0.02 2.74 16 4 C 0.53 13.87 6.80 87.66 0.60 14.46 16 5 O -0.58 -21.24 15.28 6.07 0.09 -21.15 16 6 N -0.60 -10.36 3.27 -871.90 -2.85 -13.22 16 7 C 0.07 1.05 10.48 127.77 1.34 2.39 16 8 C 0.05 0.40 10.24 127.77 1.31 1.70 16 9 S 2.62 94.17 4.41 -56.49 -0.25 93.92 16 10 O -0.97 -40.98 16.02 -122.77 -1.97 -42.95 16 11 O -1.00 -44.39 16.58 -127.65 -2.12 -46.51 16 12 N -0.99 -33.63 2.84 -513.84 -1.46 -35.10 16 13 C 0.12 3.52 5.28 86.36 0.46 3.97 16 14 C -0.13 -4.84 6.08 30.67 0.19 -4.65 16 15 C -0.10 -4.56 4.96 30.62 0.15 -4.41 16 16 C 0.03 1.56 2.24 -11.61 -0.03 1.54 16 17 H -0.02 -1.39 8.14 -2.39 -0.02 -1.41 16 18 C -0.53 -28.20 8.56 25.60 0.22 -27.98 16 19 H 0.07 3.32 7.75 -2.91 -0.02 3.30 16 20 C 0.01 0.51 5.30 84.65 0.45 0.96 16 21 N -0.92 -53.55 11.31 21.44 0.24 -53.31 16 22 Si 0.96 42.88 29.54 68.60 2.03 44.90 16 23 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 24 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 25 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 26 C 0.13 5.12 5.63 86.22 0.49 5.61 16 27 H 0.11 1.25 6.41 -2.39 -0.02 1.23 16 28 H 0.11 0.93 7.58 -2.39 -0.02 0.91 16 29 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 0.78 8.07 -2.39 -0.02 0.76 16 32 H 0.06 1.10 7.42 -2.39 -0.02 1.08 16 33 H 0.09 0.54 4.97 -2.39 -0.01 0.53 16 34 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.09 0.26 8.14 -2.39 -0.02 0.25 16 36 H 0.11 2.23 7.67 -2.39 -0.02 2.21 16 37 H 0.09 2.55 6.86 -2.39 -0.02 2.53 16 38 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.06 2.97 6.04 -2.39 -0.01 2.95 16 42 H 0.26 14.36 8.31 -92.70 -0.77 13.59 16 43 H 0.07 2.76 6.85 -2.39 -0.02 2.75 16 44 H 0.09 2.93 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -84.79 354.87 0.57 -84.22 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.99 Total: 10.45 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 5.86 Total: -21.26 kcal Atomic # 7 Polarization: -97.55 SS G_CDS: -4.07 Total: -101.62 kcal Atomic # 8 Polarization: -106.62 SS G_CDS: -3.99 Total: -110.61 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 94.17 SS G_CDS: -0.25 Total: 93.92 kcal Total: -84.79 0.57 -84.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594807065.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.024 kcal (2) G-P(sol) polarization free energy of solvation -84.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds