Wall clock time and date at job start Fri Apr 10 2020 18:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47311 * 2 1 4 4 C 1.46503 * 119.99952 * 276.39803 * 3 2 1 5 5 C 1.50703 * 109.46775 * 274.99480 * 4 3 2 6 6 H 1.08007 * 119.99640 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00100 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99856 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00028 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47119 * 89.99788 * 9 7 5 11 11 H 1.48499 * 109.46748 * 209.99734 * 9 7 5 12 12 H 1.48497 * 109.46812 * 329.99800 * 9 7 5 13 13 S 1.65604 * 120.00136 * 96.38608 * 3 2 1 14 14 O 1.42103 * 106.39897 * 151.57042 * 13 3 2 15 15 O 1.42103 * 106.39863 * 18.65611 * 13 3 2 16 16 N 1.65596 * 107.22112 * 265.11421 * 13 3 2 17 17 C 1.46491 * 120.00187 * 95.16062 * 16 13 3 18 18 C 1.46505 * 119.99625 * 275.16496 * 16 13 3 19 19 C 1.50700 * 109.47228 * 264.67070 * 18 16 13 20 20 C 1.29978 * 118.56791 * 96.65301 * 19 18 16 21 21 C 1.50388 * 122.51152 * 180.43599 * 20 19 18 22 22 C 1.53122 * 109.59598 * 343.37630 * 21 20 19 23 23 O 1.43307 * 108.41398 * 47.82507 * 22 21 20 24 24 C 1.42895 * 113.02202 * 291.85253 * 23 22 21 25 25 H 1.08991 * 109.47597 * 304.99889 * 1 2 3 26 26 H 1.08999 * 109.47001 * 64.99857 * 1 2 3 27 27 H 1.09001 * 109.46895 * 184.99149 * 1 2 3 28 28 H 1.09003 * 109.47592 * 239.99588 * 2 1 3 29 29 H 1.09000 * 109.47046 * 119.99506 * 2 1 3 30 30 H 1.08995 * 109.46942 * 34.98869 * 4 3 2 31 31 H 1.08997 * 109.47175 * 154.99375 * 4 3 2 32 32 H 0.96998 * 120.00128 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47873 * 269.99960 * 17 16 13 34 34 H 1.08997 * 109.47136 * 30.00286 * 17 16 13 35 35 H 1.09009 * 109.47042 * 150.00139 * 17 16 13 36 36 H 1.09002 * 109.47280 * 144.67432 * 18 16 13 37 37 H 1.09004 * 109.47270 * 24.66800 * 18 16 13 38 38 H 1.07997 * 118.74510 * 0.45846 * 20 19 18 39 39 H 1.09000 * 109.45198 * 223.33353 * 21 20 19 40 40 H 1.09000 * 109.43015 * 103.40266 * 21 20 19 41 41 H 1.09007 * 109.68541 * 167.56704 * 22 21 20 42 42 H 1.09004 * 109.68168 * 288.07941 * 22 21 20 43 43 H 1.08993 * 109.33226 * 289.92374 * 24 23 22 44 44 H 1.09001 * 109.25729 * 170.27146 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1293 2.1190 -1.2609 5 6 3.4513 1.8042 -1.9123 6 1 4.1401 1.1231 -1.4346 7 6 3.7818 2.3865 -3.1175 8 7 2.9433 3.2163 -3.6989 9 14 5.4209 1.9970 -3.9247 10 1 5.2654 0.8212 -4.8185 11 1 5.8714 3.1673 -4.7200 12 1 6.4285 1.6927 -2.8772 13 16 2.4448 2.1087 1.4253 14 8 3.4394 3.0710 1.1026 15 8 2.6515 1.0620 2.3638 16 7 1.1263 2.9587 1.9555 17 6 0.2037 2.3535 2.9191 18 6 0.8824 4.3160 1.4609 19 6 1.4578 5.3152 2.4312 20 6 2.6405 5.8002 2.1957 21 6 3.3030 6.7944 3.1091 22 6 2.2564 7.4143 4.0391 23 8 1.4643 6.3582 4.5970 24 6 0.6396 5.7070 3.6287 25 1 -0.3634 0.5894 0.8417 26 1 -0.3633 0.4343 -0.9314 27 1 -0.3633 -1.0238 0.0894 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3174 1.8253 -1.9262 31 1 2.0676 3.1889 -1.0624 32 1 3.1756 3.6257 -4.5470 33 1 -0.5828 1.8211 2.3843 34 1 0.7483 1.6547 3.5541 35 1 -0.2410 3.1343 3.5362 36 1 -0.1908 4.4801 1.3641 37 1 1.3580 4.4391 0.4878 38 1 3.1675 5.4771 1.3101 39 1 3.7700 7.5791 2.5140 40 1 4.0637 6.2891 3.7044 41 1 2.7544 7.9617 4.8394 42 1 1.6178 8.0924 3.4729 43 1 -0.1552 6.3847 3.3173 44 1 0.1997 4.8143 4.0734 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594845434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:52 Heat of formation + Delta-G solvation = -102.360281 kcal Electronic energy + Delta-G solvation = -26758.785531 eV Core-core repulsion = 23031.612082 eV Total energy + Delta-G solvation = -3727.173449 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.48739 -36.70450 -36.43060 -36.01204 -35.10936 -33.50596 -32.67892 -31.32965 -29.99459 -27.55202 -26.61441 -25.34832 -24.59737 -23.14663 -22.64041 -21.64384 -18.35755 -18.10260 -17.39608 -16.74661 -16.33947 -16.25934 -16.20061 -15.93125 -15.16240 -14.66975 -14.22504 -14.07840 -13.85830 -13.56004 -13.32848 -13.03924 -12.97361 -12.80074 -12.48218 -12.26465 -12.10919 -12.05629 -11.86011 -11.69082 -11.47519 -11.32996 -11.09029 -11.07219 -11.00320 -10.88753 -10.64153 -10.47049 -10.37469 -9.98141 -9.76770 -9.62605 -8.93162 -8.69769 -8.45156 -8.05818 -6.08206 -4.11533 1.19386 2.24532 3.30283 3.36733 3.42921 3.54896 3.83651 4.10806 4.43656 4.72535 4.79650 4.93631 4.98650 5.09114 5.16128 5.26483 5.31091 5.37009 5.40726 5.45266 5.51048 5.59815 5.65475 5.70940 5.74231 5.83202 5.88126 5.95124 6.06354 6.09362 6.17323 6.30283 6.59107 6.60072 6.71609 6.81985 6.91890 7.13883 7.21014 7.40665 7.61913 7.90135 8.19426 8.91034 9.53746 11.00250 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.005165 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.258074 B = 5419.798360 C = 6677.570262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.117 3.883 3 N -0.992 5.992 4 C 0.260 3.740 5 C -0.525 4.525 6 H 0.060 0.940 7 C 0.063 3.937 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.778 3.222 14 O -0.959 6.959 15 O -0.998 6.998 16 N -1.010 6.010 17 C 0.086 3.914 18 C 0.166 3.834 19 C -0.203 4.203 20 C -0.114 4.114 21 C -0.129 4.129 22 C 0.058 3.942 23 O -0.381 6.381 24 C 0.102 3.898 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.032 0.968 32 H 0.263 0.737 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.133 0.867 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.053 0.947 43 H 0.059 0.941 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.116 3.960 12.198 15.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.009 4.009 3 N -0.834 5.834 4 C 0.138 3.862 5 C -0.564 4.564 6 H 0.078 0.922 7 C -0.139 4.139 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.197 1.197 13 S 2.787 3.213 14 O -0.942 6.942 15 O -0.982 6.982 16 N -0.847 5.847 17 C -0.060 4.060 18 C 0.041 3.959 19 C -0.205 4.205 20 C -0.133 4.133 21 C -0.166 4.166 22 C -0.019 4.019 23 O -0.300 6.300 24 C 0.025 3.975 25 H 0.068 0.932 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.151 0.849 39 H 0.102 0.898 40 H 0.103 0.897 41 H 0.112 0.888 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.316 3.955 12.664 15.151 hybrid contribution 0.477 -0.070 -1.160 1.256 sum -6.839 3.885 11.505 13.936 Atomic orbital electron populations 1.22255 0.97256 1.01219 1.02140 1.21131 0.93162 0.83266 1.03368 1.57814 1.80857 1.21305 1.23387 1.19002 0.97501 0.90502 0.79216 1.21487 1.02586 1.27195 1.05176 0.92215 1.24909 0.97218 0.94839 0.96970 1.69912 1.35949 1.29993 1.17773 0.86535 0.84020 0.77821 0.79328 1.20637 1.21096 1.19715 1.02108 0.73471 0.72989 0.72696 1.93602 1.54809 1.61720 1.84071 1.93493 1.85110 1.57138 1.62493 1.58179 1.45706 1.24257 1.56565 1.21548 0.93666 0.98478 0.92263 1.20159 1.01153 0.79124 0.95477 1.21910 0.98118 1.01050 0.99457 1.22520 0.95007 0.95815 0.99981 1.21172 0.98989 0.98724 0.97754 1.22655 0.92651 0.89250 0.97346 1.88099 1.58180 1.49700 1.33972 1.21376 0.91516 0.96878 0.87688 0.93241 0.92061 0.92321 0.89868 0.90627 0.94766 0.94976 0.92738 0.92963 0.90341 0.91380 0.90296 0.88848 0.84926 0.89766 0.89750 0.88808 0.92831 0.92302 0.88348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 10.23 37.16 0.38 -2.02 16 2 C 0.12 2.05 6.39 -4.04 -0.03 2.03 16 3 N -0.99 -20.36 2.83 -115.66 -0.33 -20.69 16 4 C 0.26 6.30 5.09 -5.19 -0.03 6.28 16 5 C -0.52 -14.47 9.38 -34.44 -0.32 -14.80 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -25.59 13.29 55.43 0.74 -24.86 16 9 Si 0.90 21.66 29.54 -169.99 -5.02 16.63 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 13 S 2.78 55.69 5.97 -107.50 -0.64 55.05 16 14 O -0.96 -22.30 14.85 -57.17 -0.85 -23.15 16 15 O -1.00 -21.05 15.12 -57.17 -0.86 -21.92 16 16 N -1.01 -15.67 3.23 -123.05 -0.40 -16.06 16 17 C 0.09 1.05 10.60 59.84 0.63 1.68 16 18 C 0.17 2.40 5.38 -5.19 -0.03 2.38 16 19 C -0.20 -2.88 5.50 -101.00 -0.56 -3.43 16 20 C -0.11 -1.74 9.02 -35.89 -0.32 -2.06 16 21 C -0.13 -1.60 6.36 -27.97 -0.18 -1.78 16 22 C 0.06 0.63 6.89 37.22 0.26 0.89 16 23 O -0.38 -5.05 10.85 -35.23 -0.38 -5.43 16 24 C 0.10 1.22 6.77 35.78 0.24 1.46 16 25 H 0.05 0.65 6.55 -51.93 -0.34 0.31 16 26 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.49 8.12 -51.93 -0.42 1.07 16 29 H 0.08 1.28 6.85 -51.93 -0.36 0.92 16 30 H 0.03 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.03 0.81 6.67 -51.93 -0.35 0.47 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.79 16 33 H 0.05 0.55 6.61 -51.93 -0.34 0.21 16 34 H 0.08 1.02 7.00 -51.93 -0.36 0.65 16 35 H 0.07 0.66 5.88 -51.92 -0.31 0.36 16 36 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 37 H 0.09 1.55 6.35 -51.93 -0.33 1.22 16 38 H 0.13 2.37 6.75 -52.49 -0.35 2.01 16 39 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.09 0.83 8.14 -51.92 -0.42 0.40 16 42 H 0.05 0.52 8.10 -51.93 -0.42 0.10 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.10 1.08 5.95 -51.93 -0.31 0.77 16 LS Contribution 360.06 15.07 5.43 5.43 Total: -1.00 -32.89 360.06 -9.18 -42.06 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.81 Total: 0.66 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -0.04 Total: -7.74 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: 0.01 Total: -61.60 kcal Atomic # 8 Polarization: -48.40 SS G_CDS: -2.10 Total: -50.49 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 55.69 SS G_CDS: -0.64 Total: 55.05 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.89 -9.18 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594845434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.298 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds