Wall clock time and date at job start Fri Apr 10 2020 18:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47311 * 2 1 4 4 C 1.46503 * 119.99952 * 276.39803 * 3 2 1 5 5 C 1.50703 * 109.46775 * 274.99480 * 4 3 2 6 6 H 1.08007 * 119.99640 * 359.97438 * 5 4 3 7 7 C 1.37873 * 120.00100 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99856 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 120.00028 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47119 * 89.99788 * 9 7 5 11 11 H 1.48499 * 109.46748 * 209.99734 * 9 7 5 12 12 H 1.48497 * 109.46812 * 329.99800 * 9 7 5 13 13 S 1.65604 * 120.00136 * 96.38608 * 3 2 1 14 14 O 1.42103 * 106.39897 * 151.57042 * 13 3 2 15 15 O 1.42103 * 106.39863 * 18.65611 * 13 3 2 16 16 N 1.65596 * 107.22112 * 265.11421 * 13 3 2 17 17 C 1.46491 * 120.00187 * 95.16062 * 16 13 3 18 18 C 1.46505 * 119.99625 * 275.16496 * 16 13 3 19 19 C 1.50700 * 109.47228 * 264.67070 * 18 16 13 20 20 C 1.29978 * 118.56791 * 96.65301 * 19 18 16 21 21 C 1.50388 * 122.51152 * 180.43599 * 20 19 18 22 22 C 1.53122 * 109.59598 * 343.37630 * 21 20 19 23 23 O 1.43307 * 108.41398 * 47.82507 * 22 21 20 24 24 C 1.42895 * 113.02202 * 291.85253 * 23 22 21 25 25 H 1.08991 * 109.47597 * 304.99889 * 1 2 3 26 26 H 1.08999 * 109.47001 * 64.99857 * 1 2 3 27 27 H 1.09001 * 109.46895 * 184.99149 * 1 2 3 28 28 H 1.09003 * 109.47592 * 239.99588 * 2 1 3 29 29 H 1.09000 * 109.47046 * 119.99506 * 2 1 3 30 30 H 1.08995 * 109.46942 * 34.98869 * 4 3 2 31 31 H 1.08997 * 109.47175 * 154.99375 * 4 3 2 32 32 H 0.96998 * 120.00128 * 180.02562 * 8 7 5 33 33 H 1.08998 * 109.47873 * 269.99960 * 17 16 13 34 34 H 1.08997 * 109.47136 * 30.00286 * 17 16 13 35 35 H 1.09009 * 109.47042 * 150.00139 * 17 16 13 36 36 H 1.09002 * 109.47280 * 144.67432 * 18 16 13 37 37 H 1.09004 * 109.47270 * 24.66800 * 18 16 13 38 38 H 1.07997 * 118.74510 * 0.45846 * 20 19 18 39 39 H 1.09000 * 109.45198 * 223.33353 * 21 20 19 40 40 H 1.09000 * 109.43015 * 103.40266 * 21 20 19 41 41 H 1.09007 * 109.68541 * 167.56704 * 22 21 20 42 42 H 1.09004 * 109.68168 * 288.07941 * 22 21 20 43 43 H 1.08993 * 109.33226 * 289.92374 * 24 23 22 44 44 H 1.09001 * 109.25729 * 170.27146 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1293 2.1190 -1.2609 5 6 3.4513 1.8042 -1.9123 6 1 4.1401 1.1231 -1.4346 7 6 3.7818 2.3865 -3.1175 8 7 2.9433 3.2163 -3.6989 9 14 5.4209 1.9970 -3.9247 10 1 5.2654 0.8212 -4.8185 11 1 5.8714 3.1673 -4.7200 12 1 6.4285 1.6927 -2.8772 13 16 2.4448 2.1087 1.4253 14 8 3.4394 3.0710 1.1026 15 8 2.6515 1.0620 2.3638 16 7 1.1263 2.9587 1.9555 17 6 0.2037 2.3535 2.9191 18 6 0.8824 4.3160 1.4609 19 6 1.4578 5.3152 2.4312 20 6 2.6405 5.8002 2.1957 21 6 3.3030 6.7944 3.1091 22 6 2.2564 7.4143 4.0391 23 8 1.4643 6.3582 4.5970 24 6 0.6396 5.7070 3.6287 25 1 -0.3634 0.5894 0.8417 26 1 -0.3633 0.4343 -0.9314 27 1 -0.3633 -1.0238 0.0894 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.3174 1.8253 -1.9262 31 1 2.0676 3.1889 -1.0624 32 1 3.1756 3.6257 -4.5470 33 1 -0.5828 1.8211 2.3843 34 1 0.7483 1.6547 3.5541 35 1 -0.2410 3.1343 3.5362 36 1 -0.1908 4.4801 1.3641 37 1 1.3580 4.4391 0.4878 38 1 3.1675 5.4771 1.3101 39 1 3.7700 7.5791 2.5140 40 1 4.0637 6.2891 3.7044 41 1 2.7544 7.9617 4.8394 42 1 1.6178 8.0924 3.4729 43 1 -0.1552 6.3847 3.3173 44 1 0.1997 4.8143 4.0734 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594845434.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:51 Heat of formation + Delta-G solvation = -125.616599 kcal Electronic energy + Delta-G solvation = -26759.794001 eV Core-core repulsion = 23031.612082 eV Total energy + Delta-G solvation = -3728.181919 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.47651 -38.35190 -37.71483 -37.54283 -36.80802 -34.72473 -34.57816 -32.31880 -31.54133 -28.62128 -28.47407 -26.34621 -25.69433 -24.96190 -23.69362 -23.18467 -19.85962 -19.18255 -19.01339 -18.35823 -18.15627 -17.51709 -17.30472 -17.11241 -16.68114 -16.15050 -15.60561 -15.34632 -14.97989 -14.84060 -14.71227 -14.66145 -14.09520 -13.99874 -13.82284 -13.65224 -13.60667 -13.35372 -13.21156 -13.13967 -13.03783 -12.82509 -12.74993 -12.71362 -12.45136 -12.24341 -12.17129 -12.07448 -11.75734 -11.60482 -11.55969 -10.61492 -10.59890 -10.08946 -9.88812 -9.71194 -8.21258 -6.31980 -0.36140 1.08453 1.36597 1.38724 1.49236 2.08688 2.38875 2.59881 2.96072 3.09569 3.40698 3.67914 3.72917 3.93656 4.03174 4.05115 4.27627 4.38164 4.40545 4.45430 4.48634 4.51317 4.55103 4.58692 4.70798 4.75291 4.79277 4.94347 4.99564 5.01820 5.04334 5.08644 5.14389 5.18919 5.42527 5.48847 5.54313 5.63314 5.71525 5.89922 5.99149 6.11741 6.18305 6.75441 7.36479 8.85944 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.005165 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.258074 B = 5419.798360 C = 6677.570262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.108 3.892 3 N -0.998 5.998 4 C 0.278 3.722 5 C -0.546 4.546 6 H 0.046 0.954 7 C 0.016 3.984 8 N -0.922 5.922 9 Si 0.951 3.049 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.278 1.278 13 S 2.786 3.214 14 O -1.000 7.000 15 O -1.011 7.011 16 N -1.001 6.001 17 C 0.076 3.924 18 C 0.162 3.838 19 C -0.195 4.195 20 C -0.141 4.141 21 C -0.129 4.129 22 C 0.059 3.941 23 O -0.398 6.398 24 C 0.101 3.899 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.027 0.973 31 H 0.016 0.984 32 H 0.267 0.733 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.118 0.882 37 H 0.062 0.938 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.117 0.883 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.882 4.159 13.420 17.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.018 4.018 3 N -0.839 5.839 4 C 0.155 3.845 5 C -0.585 4.585 6 H 0.065 0.935 7 C -0.183 4.183 8 N -0.562 5.562 9 Si 0.776 3.224 10 H -0.191 1.191 11 H -0.203 1.203 12 H -0.203 1.203 13 S 2.795 3.205 14 O -0.984 6.984 15 O -0.995 6.995 16 N -0.841 5.841 17 C -0.068 4.068 18 C 0.037 3.963 19 C -0.197 4.197 20 C -0.161 4.161 21 C -0.166 4.166 22 C -0.017 4.017 23 O -0.317 6.317 24 C 0.025 3.975 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.106 0.894 28 H 0.090 0.910 29 H 0.100 0.900 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.136 0.864 37 H 0.081 0.919 38 H 0.112 0.888 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.135 0.865 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.088 4.123 13.892 17.104 hybrid contribution 0.995 -0.146 -1.501 1.807 sum -8.093 3.977 12.391 15.325 Atomic orbital electron populations 1.22179 0.94227 1.03327 1.02231 1.21367 0.95756 0.81583 1.03093 1.57725 1.81449 1.22484 1.22193 1.18540 0.95707 0.89938 0.80359 1.21799 1.03827 1.27147 1.05749 0.93525 1.25650 1.00387 0.94731 0.97550 1.69989 1.37399 1.30575 1.18187 0.85661 0.79981 0.78297 0.78415 1.19096 1.20261 1.20291 1.01619 0.73911 0.72522 0.72407 1.93555 1.57470 1.62739 1.84605 1.93465 1.85735 1.57776 1.62555 1.57796 1.45238 1.24233 1.56880 1.21879 0.93313 0.99556 0.92024 1.20289 1.03137 0.78553 0.94278 1.22135 0.97801 0.99842 0.99967 1.22529 0.95878 0.97862 0.99873 1.21212 0.99315 0.98407 0.97662 1.22807 0.92254 0.88853 0.97820 1.88076 1.58589 1.50363 1.34634 1.21544 0.91390 0.98148 0.86388 0.91855 0.93003 0.89393 0.91028 0.90041 0.95519 0.96592 0.92398 0.90686 0.91148 0.88160 0.86405 0.91936 0.88826 0.88472 0.90705 0.86544 0.91279 0.89557 0.86897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.25 10.23 71.98 0.74 -3.52 16 2 C 0.11 3.74 6.39 86.38 0.55 4.30 16 3 N -1.00 -41.78 2.83 -519.84 -1.47 -43.25 16 4 C 0.28 13.98 5.09 85.63 0.44 14.41 16 5 C -0.55 -31.07 9.38 25.60 0.24 -30.83 16 6 H 0.05 2.71 7.81 -2.91 -0.02 2.68 16 7 C 0.02 0.93 5.46 84.65 0.46 1.39 16 8 N -0.92 -53.51 13.29 21.45 0.28 -53.22 16 9 Si 0.95 44.93 29.54 68.60 2.03 46.96 16 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 S 2.79 113.79 5.97 -56.49 -0.34 113.45 16 14 O -1.00 -49.00 14.85 -128.00 -1.90 -50.91 16 15 O -1.01 -42.75 15.12 -128.00 -1.94 -44.69 16 16 N -1.00 -30.06 3.23 -543.22 -1.75 -31.81 16 17 C 0.08 1.63 10.60 127.77 1.35 2.99 16 18 C 0.16 4.57 5.38 85.63 0.46 5.03 16 19 C -0.20 -5.36 5.50 -15.58 -0.09 -5.44 16 20 C -0.14 -4.46 9.02 26.60 0.24 -4.22 16 21 C -0.13 -3.17 6.36 29.79 0.19 -2.98 16 22 C 0.06 1.16 6.89 72.02 0.50 1.65 16 23 O -0.40 -9.51 10.85 -148.98 -1.62 -11.13 16 24 C 0.10 2.12 6.77 71.09 0.48 2.60 16 25 H 0.06 1.48 6.55 -2.39 -0.02 1.47 16 26 H 0.05 1.47 8.13 -2.39 -0.02 1.45 16 27 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.07 2.61 8.12 -2.39 -0.02 2.59 16 29 H 0.08 2.72 6.85 -2.39 -0.02 2.70 16 30 H 0.03 1.37 8.10 -2.39 -0.02 1.35 16 31 H 0.02 0.86 6.67 -2.39 -0.02 0.84 16 32 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 33 H 0.07 1.29 6.61 -2.39 -0.02 1.28 16 34 H 0.07 1.66 7.00 -2.39 -0.02 1.64 16 35 H 0.10 1.53 5.88 -2.38 -0.01 1.51 16 36 H 0.12 2.39 8.10 -2.39 -0.02 2.37 16 37 H 0.06 2.17 6.35 -2.39 -0.02 2.15 16 38 H 0.09 3.66 6.75 -2.91 -0.02 3.64 16 39 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.12 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.07 1.15 8.10 -2.38 -0.02 1.13 16 43 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.11 2.01 5.95 -2.39 -0.01 2.00 16 Total: -1.00 -73.26 360.06 -0.15 -73.41 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: 0.99 Total: 15.79 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: 5.56 Total: -14.61 kcal Atomic # 7 Polarization: -125.35 SS G_CDS: -2.94 Total: -128.28 kcal Atomic # 8 Polarization: -101.27 SS G_CDS: -5.45 Total: -106.72 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 113.79 SS G_CDS: -0.34 Total: 113.45 kcal Total: -73.26 -0.15 -73.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594845434.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.208 kcal (2) G-P(sol) polarization free energy of solvation -73.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds