Wall clock time and date at job start Fri Apr 10 2020 18:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46551 * 2 1 4 4 C 1.50693 * 109.47033 * 240.00497 * 2 1 3 5 5 H 1.08004 * 120.00165 * 239.99422 * 4 2 1 6 6 C 1.37876 * 120.00223 * 59.99631 * 4 2 1 7 7 N 1.31512 * 120.00176 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00084 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47471 * 89.99918 * 8 6 4 10 10 H 1.48501 * 109.46945 * 210.00115 * 8 6 4 11 11 H 1.48499 * 109.47003 * 329.99954 * 8 6 4 12 12 N 1.46494 * 109.47399 * 120.00107 * 2 1 3 13 13 C 1.46502 * 119.99876 * 60.00322 * 12 2 1 14 14 S 1.65602 * 120.00183 * 240.00028 * 12 2 1 15 15 O 1.42098 * 106.40249 * 336.46517 * 14 12 2 16 16 O 1.42095 * 106.40289 * 203.53600 * 14 12 2 17 17 N 1.65606 * 107.21643 * 90.00062 * 14 12 2 18 18 C 1.46496 * 119.99705 * 270.00006 * 17 14 12 19 19 C 1.46499 * 119.99810 * 90.00178 * 17 14 12 20 20 C 1.50704 * 109.47090 * 264.99558 * 19 17 14 21 21 C 1.29982 * 118.56290 * 95.00117 * 20 19 17 22 22 C 1.50389 * 122.51161 * 180.43182 * 21 20 19 23 23 C 1.53125 * 109.59556 * 343.37807 * 22 21 20 24 24 O 1.43308 * 108.41399 * 47.82310 * 23 22 21 25 25 C 1.42898 * 113.02169 * 291.85667 * 24 23 22 26 26 H 1.08998 * 109.47357 * 60.00233 * 1 2 3 27 27 H 1.09002 * 109.46551 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47004 * 299.99333 * 1 2 3 29 29 H 0.96998 * 120.00407 * 180.02562 * 7 6 4 30 30 H 1.09006 * 109.46844 * 269.99898 * 13 12 2 31 31 H 1.08997 * 109.47529 * 29.99651 * 13 12 2 32 32 H 1.09001 * 109.47119 * 150.00322 * 13 12 2 33 33 H 1.08999 * 109.47519 * 269.99497 * 18 17 14 34 34 H 1.08996 * 109.47787 * 30.00636 * 18 17 14 35 35 H 1.09005 * 109.47178 * 150.00055 * 18 17 14 36 36 H 1.09002 * 109.46955 * 145.00022 * 19 17 14 37 37 H 1.08998 * 109.47428 * 24.99919 * 19 17 14 38 38 H 1.08004 * 118.74794 * 0.45617 * 21 20 19 39 39 H 1.08997 * 109.45433 * 223.33711 * 22 21 20 40 40 H 1.09003 * 109.42661 * 103.40157 * 22 21 20 41 41 H 1.09002 * 109.68336 * 167.56430 * 23 22 21 42 42 H 1.08999 * 109.68109 * 288.08078 * 23 22 21 43 43 H 1.09004 * 109.32593 * 289.92600 * 25 24 23 44 44 H 1.08996 * 109.25753 * 170.27764 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 1.3428 -2.1615 -4.4120 10 1 2.4865 -0.1411 -5.1123 11 1 3.6293 -1.7581 -3.7123 12 7 2.0184 -0.6906 1.1961 13 6 1.6646 -2.0932 1.4279 14 16 2.9705 0.1142 2.2862 15 8 3.5794 1.1830 1.5749 16 8 3.7119 -0.8789 2.9814 17 7 1.9608 0.8090 3.3998 18 6 1.4469 2.1629 3.1784 19 6 1.5815 0.0696 4.6064 20 6 0.2633 -0.6239 4.3769 21 6 0.2730 -1.8634 3.9859 22 6 -0.9890 -2.6375 3.7214 23 6 -2.1778 -1.9163 4.3629 24 8 -2.1103 -0.5292 4.0089 25 6 -1.0045 0.1477 4.6096 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 0.7088 1.1615 -3.4843 30 1 0.7377 -2.1444 1.9992 31 1 1.5296 -2.5969 0.4707 32 1 2.4631 -2.5819 1.9862 33 1 2.1321 2.8879 3.6176 34 1 1.3594 2.3478 2.1078 35 1 0.4667 2.2604 3.6452 36 1 1.4867 0.7626 5.4424 37 1 2.3473 -0.6718 4.8340 38 1 1.2236 -2.3565 3.8458 39 1 -0.8980 -3.6367 4.1472 40 1 -1.1485 -2.7144 2.6459 41 1 -3.1097 -2.3445 3.9937 42 1 -2.1295 -2.0213 5.4467 43 1 -1.1784 0.2421 5.6815 44 1 -0.9090 1.1406 4.1702 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594846139.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:55 Heat of formation + Delta-G solvation = -92.017821 kcal Electronic energy + Delta-G solvation = -27548.537384 eV Core-core repulsion = 23821.812418 eV Total energy + Delta-G solvation = -3726.724966 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.58918 -36.78859 -36.46204 -36.09752 -35.22128 -33.66671 -32.51886 -31.38264 -29.06060 -27.56458 -25.84494 -25.16999 -25.11484 -24.62423 -22.66649 -20.65270 -18.39167 -18.16208 -17.34084 -17.09075 -16.43214 -16.28261 -16.08616 -15.89604 -15.03361 -14.74774 -14.24805 -13.97354 -13.79534 -13.51019 -13.36225 -13.02940 -12.77174 -12.60437 -12.42683 -12.26364 -12.09805 -11.93949 -11.73680 -11.48912 -11.32099 -11.25595 -11.18882 -11.10179 -10.88671 -10.80707 -10.66472 -10.38130 -10.17909 -10.04389 -9.65221 -9.25803 -8.97331 -8.74696 -8.42942 -7.88883 -6.05180 -4.11582 1.16819 2.07005 3.29058 3.36115 3.40065 3.50698 3.83592 4.08730 4.41441 4.63129 4.66959 4.87796 4.91752 5.04999 5.10239 5.25837 5.26362 5.37282 5.39461 5.42780 5.57531 5.66163 5.69446 5.80027 5.85152 5.90522 6.02822 6.09783 6.25472 6.37073 6.43255 6.65423 6.75226 6.79095 6.89832 6.92227 7.09320 7.09932 7.51905 7.66855 7.82718 8.08743 8.30943 8.90123 9.53806 11.00402 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014669 B = 0.005629 C = 0.004874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.371567 B = 4973.209691 C = 5743.505480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.270 3.730 3 H 0.056 0.944 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.983 5.983 13 C 0.086 3.914 14 S 2.775 3.225 15 O -0.972 6.972 16 O -0.997 6.997 17 N -1.009 6.009 18 C 0.095 3.905 19 C 0.157 3.843 20 C -0.192 4.192 21 C -0.126 4.126 22 C -0.129 4.129 23 C 0.059 3.941 24 O -0.374 6.374 25 C 0.103 3.897 26 H 0.090 0.910 27 H 0.030 0.970 28 H 0.011 0.989 29 H 0.263 0.737 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.601 -3.063 16.106 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.167 3.833 3 H 0.073 0.927 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.825 5.825 13 C -0.060 4.060 14 S 2.784 3.216 15 O -0.955 6.955 16 O -0.981 6.981 17 N -0.846 5.846 18 C -0.050 4.050 19 C 0.031 3.969 20 C -0.194 4.194 21 C -0.146 4.146 22 C -0.166 4.166 23 C -0.018 4.018 24 O -0.292 6.292 25 C 0.026 3.974 26 H 0.108 0.892 27 H 0.049 0.951 28 H 0.030 0.970 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.136 0.864 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.113 0.887 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.839 -2.737 15.849 16.796 hybrid contribution 0.044 -0.624 -0.820 1.032 sum -4.795 -3.361 15.029 16.129 Atomic orbital electron populations 1.22051 0.97980 0.99664 1.00431 1.18705 0.91402 0.92780 0.80408 0.92669 1.21332 1.31537 1.12971 0.90110 0.92027 1.24896 0.94984 0.95000 0.98940 1.69860 1.36553 1.22653 1.23729 0.86515 0.79256 0.79310 0.82433 1.20684 1.21122 1.19877 1.57635 1.69680 1.19712 1.35471 1.21693 0.99073 0.82484 1.02759 1.02127 0.73923 0.73102 0.72412 1.93598 1.74059 1.55833 1.72058 1.93493 1.69565 1.60434 1.74657 1.58250 1.67042 1.24575 1.34762 1.21461 0.98933 0.81862 1.02757 1.20221 0.93329 0.95823 0.87548 1.22010 0.97241 0.96080 1.04085 1.22268 0.99346 0.95481 0.97463 1.21184 0.93383 0.99047 1.02958 1.22616 0.98496 0.82197 0.98450 1.88172 1.47037 1.21848 1.72189 1.21350 0.83214 0.95687 0.97106 0.89191 0.95066 0.96970 0.92729 0.93079 0.90076 0.92337 0.92811 0.90537 0.91554 0.89999 0.88642 0.86432 0.89966 0.89151 0.88740 0.93091 0.92400 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.97 37.16 0.33 -2.94 16 2 C 0.27 6.64 2.62 -69.09 -0.18 6.45 16 3 H 0.06 1.51 6.91 -51.93 -0.36 1.15 16 4 C -0.52 -14.06 7.99 -34.44 -0.28 -14.34 16 5 H 0.06 1.66 7.33 -52.48 -0.38 1.27 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.87 11.32 55.43 0.63 -24.24 16 8 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.98 -20.62 3.12 -115.85 -0.36 -20.98 16 13 C 0.09 1.55 8.39 59.85 0.50 2.05 16 14 S 2.77 55.81 6.07 -107.50 -0.65 55.16 16 15 O -0.97 -23.12 15.78 -57.17 -0.90 -24.02 16 16 O -1.00 -20.59 15.29 -57.17 -0.87 -21.46 16 17 N -1.01 -15.59 3.23 -123.05 -0.40 -15.99 16 18 C 0.10 1.31 10.31 59.84 0.62 1.93 16 19 C 0.16 1.95 5.71 -5.19 -0.03 1.92 16 20 C -0.19 -2.35 5.50 -101.01 -0.56 -2.90 16 21 C -0.13 -1.55 6.66 -35.89 -0.24 -1.79 16 22 C -0.13 -1.37 6.15 -27.97 -0.17 -1.54 16 23 C 0.06 0.60 6.89 37.22 0.26 0.86 16 24 O -0.37 -4.95 10.85 -35.23 -0.38 -5.33 16 25 C 0.10 1.17 6.76 35.78 0.24 1.42 16 26 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 27 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 28 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.05 0.81 3.79 -51.93 -0.20 0.61 16 31 H 0.08 1.54 7.02 -51.93 -0.36 1.17 16 32 H 0.06 0.99 6.86 -51.93 -0.36 0.63 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.22 7.79 -51.93 -0.40 0.81 16 35 H 0.07 0.73 6.00 -51.93 -0.31 0.42 16 36 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 37 H 0.10 1.23 6.63 -51.93 -0.34 0.88 16 38 H 0.12 1.49 6.53 -52.48 -0.34 1.15 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.08 7.45 -51.93 -0.39 0.69 16 41 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.05 0.44 8.10 -51.93 -0.42 0.02 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.10 1.14 6.07 -51.93 -0.32 0.83 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -32.48 349.10 -8.87 -41.35 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.57 Total: 1.25 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 0.40 Total: -7.22 kcal Atomic # 7 Polarization: -61.08 SS G_CDS: -0.13 Total: -61.21 kcal Atomic # 8 Polarization: -48.66 SS G_CDS: -2.16 Total: -50.82 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 55.81 SS G_CDS: -0.65 Total: 55.16 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.48 -8.87 -41.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594846139.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.671 kcal (2) G-P(sol) polarization free energy of solvation -32.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds