Wall clock time and date at job start Fri Apr 10 2020 18:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47107 * 2 1 4 4 C 1.50695 * 109.47427 * 120.00068 * 2 1 3 5 5 H 1.08001 * 119.99912 * 119.99398 * 4 2 1 6 6 C 1.37875 * 120.00288 * 300.00466 * 4 2 1 7 7 N 1.31515 * 119.99826 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00208 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47166 * 89.99644 * 8 6 4 10 10 H 1.48509 * 109.46688 * 209.99749 * 8 6 4 11 11 H 1.48497 * 109.46854 * 329.99201 * 8 6 4 12 12 N 1.46501 * 109.46843 * 240.00463 * 2 1 3 13 13 C 1.46501 * 120.00016 * 299.99449 * 12 2 1 14 14 S 1.65605 * 120.00229 * 120.00511 * 12 2 1 15 15 O 1.42097 * 106.40219 * 156.45849 * 14 12 2 16 16 O 1.42104 * 106.40114 * 23.53265 * 14 12 2 17 17 N 1.65604 * 107.21205 * 269.99804 * 14 12 2 18 18 C 1.46501 * 119.99542 * 269.99353 * 17 14 12 19 19 C 1.46497 * 120.00132 * 89.99993 * 17 14 12 20 20 C 1.50702 * 109.47239 * 94.99758 * 19 17 14 21 21 C 1.29982 * 118.56578 * 94.99677 * 20 19 17 22 22 C 1.50389 * 122.51161 * 180.38759 * 21 20 19 23 23 C 1.53125 * 109.59556 * 343.37807 * 22 21 20 24 24 O 1.43308 * 108.41399 * 47.82310 * 23 22 21 25 25 C 1.42898 * 113.02169 * 291.85667 * 24 23 22 26 26 H 1.08999 * 109.47107 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47134 * 300.00150 * 1 2 3 28 28 H 1.09004 * 109.47197 * 59.99589 * 1 2 3 29 29 H 0.96998 * 120.00027 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47229 * 270.00452 * 13 12 2 31 31 H 1.09006 * 109.46800 * 30.00533 * 13 12 2 32 32 H 1.08999 * 109.47102 * 149.99964 * 13 12 2 33 33 H 1.08996 * 109.47617 * 270.00360 * 18 17 14 34 34 H 1.08996 * 109.47473 * 30.00892 * 18 17 14 35 35 H 1.09003 * 109.46555 * 150.00432 * 18 17 14 36 36 H 1.08992 * 109.47205 * 334.99358 * 19 17 14 37 37 H 1.09000 * 109.46844 * 214.99317 * 19 17 14 38 38 H 1.08004 * 118.74794 * 0.41194 * 21 20 19 39 39 H 1.08997 * 109.45433 * 223.33711 * 22 21 20 40 40 H 1.09003 * 109.42661 * 103.40157 * 22 21 20 41 41 H 1.09002 * 109.68336 * 167.56430 * 23 22 21 42 42 H 1.08999 * 109.68109 * 288.08078 * 23 22 21 43 43 H 1.09004 * 109.32593 * 289.92600 * 25 24 23 44 44 H 1.08996 * 109.25753 * 170.27764 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.6298 -0.5461 4.4122 10 1 1.3431 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 3.7117 -0.8788 -2.9816 16 8 3.5794 1.1830 -1.5748 17 7 1.9606 0.8092 -3.3998 18 6 1.5813 0.0700 -4.6064 19 6 1.4469 2.1631 -3.1782 20 6 2.3279 3.1575 -3.8897 21 6 1.9871 3.5487 -5.0815 22 6 2.8049 4.5305 -5.8746 23 6 3.7779 5.2590 -4.9433 24 8 4.4381 4.2843 -4.1262 25 6 3.5615 3.6534 -3.1904 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.7095 1.1616 3.4844 30 1 2.4157 -2.7376 -0.9719 31 1 0.6903 -2.3001 -0.9847 32 1 1.6237 -2.2851 -2.5003 33 1 2.2998 0.2759 -5.3996 34 1 1.5742 -0.9984 -4.3908 35 1 0.5873 0.3826 -4.9264 36 1 1.4431 2.3801 -2.1101 37 1 0.4311 2.2344 -3.5671 38 1 1.0818 3.1541 -5.5187 39 1 2.1430 5.2559 -6.3474 40 1 3.3669 3.9978 -6.6418 41 1 4.5150 5.8022 -5.5347 42 1 3.2283 5.9565 -4.3112 43 1 3.2769 4.3720 -2.4217 44 1 4.0765 2.8125 -2.7261 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594846140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:58 Heat of formation + Delta-G solvation = -96.647757 kcal Electronic energy + Delta-G solvation = -26797.527144 eV Core-core repulsion = 23070.601408 eV Total energy + Delta-G solvation = -3726.925736 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.46942 -36.78998 -36.47810 -36.17940 -35.24821 -33.52859 -32.59749 -31.42376 -29.12563 -27.41205 -25.62189 -25.52809 -25.16912 -24.60482 -22.61900 -20.71574 -18.60900 -18.03431 -17.32602 -17.03863 -16.42198 -16.28442 -16.07314 -15.69135 -15.04416 -14.84007 -14.29814 -13.83449 -13.78143 -13.51122 -13.28191 -13.03849 -12.92369 -12.79897 -12.56593 -12.49486 -12.09119 -11.90566 -11.72188 -11.62779 -11.38485 -11.28872 -11.13237 -11.02451 -10.95743 -10.82401 -10.63308 -10.47767 -10.28705 -10.03344 -9.60775 -9.29898 -8.99646 -8.86181 -8.46562 -7.98449 -6.09244 -4.15483 1.09505 2.06064 3.28677 3.35173 3.37985 3.48525 3.92781 4.08073 4.39257 4.65162 4.69211 4.84124 4.85470 5.01552 5.11823 5.22531 5.30132 5.37293 5.47211 5.50012 5.61490 5.63727 5.72899 5.74862 5.80963 5.86133 6.02509 6.11986 6.17325 6.34498 6.43007 6.56159 6.62579 6.74635 6.77326 6.88713 6.98423 7.20042 7.43490 7.61081 7.76237 8.01472 8.25482 8.86731 9.50549 10.96462 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018380 B = 0.004404 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.052196 B = 6356.696504 C = 6926.780572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.990 5.990 13 C 0.110 3.890 14 S 2.775 3.225 15 O -0.992 6.992 16 O -0.968 6.968 17 N -1.010 6.010 18 C 0.100 3.900 19 C 0.162 3.838 20 C -0.169 4.169 21 C -0.142 4.142 22 C -0.124 4.124 23 C 0.053 3.947 24 O -0.378 6.378 25 C 0.080 3.920 26 H 0.033 0.967 27 H 0.093 0.907 28 H 0.010 0.990 29 H 0.263 0.737 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.053 0.947 43 H 0.068 0.932 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 4.695 -15.427 16.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.833 5.833 13 C -0.036 4.036 14 S 2.785 3.215 15 O -0.976 6.976 16 O -0.952 6.952 17 N -0.847 5.847 18 C -0.046 4.046 19 C 0.037 3.963 20 C -0.171 4.171 21 C -0.162 4.162 22 C -0.161 4.161 23 C -0.024 4.024 24 O -0.296 6.296 25 C 0.004 3.996 26 H 0.052 0.948 27 H 0.111 0.889 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.072 0.928 43 H 0.086 0.914 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.519 4.791 -15.299 16.103 hybrid contribution -0.613 -0.467 0.807 1.115 sum -2.132 4.324 -14.492 15.273 Atomic orbital electron populations 1.22127 0.98321 0.99767 1.00560 1.18741 0.91241 0.92961 0.80574 0.92358 1.21324 1.31543 1.13020 0.90019 0.91988 1.24892 0.94912 0.95012 0.98976 1.69848 1.36566 1.22739 1.23790 0.86505 0.78695 0.80001 0.82273 1.20512 1.21181 1.19877 1.57778 1.70042 1.19793 1.35661 1.21152 1.01747 0.82131 0.98619 1.02176 0.73851 0.73133 0.72322 1.93535 1.69070 1.60375 1.74595 1.93530 1.73865 1.55561 1.72220 1.58201 1.68187 1.23314 1.34994 1.21359 1.00425 0.95717 0.87073 1.20192 0.95734 0.79243 1.01169 1.22176 0.98915 0.98801 0.97234 1.22044 0.99992 0.99055 0.95101 1.21098 0.98070 0.98197 0.98728 1.22634 0.95893 0.90796 0.93035 1.88165 1.34969 1.55197 1.51307 1.21800 0.89292 0.98564 0.89970 0.94765 0.88851 0.97106 0.92703 0.93240 0.90940 0.93494 0.92977 0.91367 0.91522 0.88817 0.89917 0.87233 0.90240 0.90151 0.88906 0.92844 0.91401 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.95 37.16 0.33 -2.92 16 2 C 0.27 6.37 2.62 -69.08 -0.18 6.18 16 3 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 4 C -0.52 -13.81 8.37 -34.44 -0.29 -14.10 16 5 H 0.06 1.66 7.65 -52.49 -0.40 1.26 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.30 11.32 55.43 0.63 -23.67 16 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.99 -20.31 3.12 -115.86 -0.36 -20.67 16 13 C 0.11 1.95 9.53 59.85 0.57 2.52 16 14 S 2.78 54.53 5.97 -107.50 -0.64 53.89 16 15 O -0.99 -20.96 16.28 -57.17 -0.93 -21.89 16 16 O -0.97 -21.47 12.93 -57.17 -0.74 -22.21 16 17 N -1.01 -15.41 3.23 -123.06 -0.40 -15.80 16 18 C 0.10 1.22 10.33 59.85 0.62 1.83 16 19 C 0.16 2.27 5.43 -5.19 -0.03 2.24 16 20 C -0.17 -2.34 5.50 -101.01 -0.56 -2.89 16 21 C -0.14 -1.63 9.53 -35.89 -0.34 -1.97 16 22 C -0.12 -1.22 6.36 -27.97 -0.18 -1.40 16 23 C 0.05 0.59 6.89 37.22 0.26 0.84 16 24 O -0.38 -5.80 10.85 -35.23 -0.38 -6.18 16 25 C 0.08 1.26 6.64 35.78 0.24 1.50 16 26 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 27 H 0.09 2.28 6.07 -51.93 -0.32 1.96 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.23 6.43 -51.93 -0.33 0.90 16 32 H 0.05 0.70 7.37 -51.93 -0.38 0.31 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.81 7.37 -51.93 -0.38 0.43 16 35 H 0.07 0.63 7.94 -51.93 -0.41 0.21 16 36 H 0.09 1.45 7.59 -51.93 -0.39 1.06 16 37 H 0.08 0.93 7.68 -51.93 -0.40 0.53 16 38 H 0.11 1.06 7.83 -52.48 -0.41 0.65 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.05 0.54 8.10 -51.93 -0.42 0.12 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.13 2.36 5.33 -51.93 -0.28 2.09 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -31.43 358.24 -9.03 -40.46 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.93 Total: 1.26 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 0.35 Total: -6.52 kcal Atomic # 7 Polarization: -60.02 SS G_CDS: -0.13 Total: -60.15 kcal Atomic # 8 Polarization: -48.23 SS G_CDS: -2.05 Total: -50.28 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 54.53 SS G_CDS: -0.64 Total: 53.89 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.43 -9.03 -40.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594846140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.190 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds