Wall clock time and date at job start Fri Apr 10 2020 18:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47107 * 2 1 4 4 C 1.50695 * 109.47427 * 120.00068 * 2 1 3 5 5 H 1.08001 * 119.99912 * 119.99398 * 4 2 1 6 6 C 1.37875 * 120.00288 * 300.00466 * 4 2 1 7 7 N 1.31515 * 119.99826 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00208 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47166 * 89.99644 * 8 6 4 10 10 H 1.48509 * 109.46688 * 209.99749 * 8 6 4 11 11 H 1.48497 * 109.46854 * 329.99201 * 8 6 4 12 12 N 1.46501 * 109.46843 * 240.00463 * 2 1 3 13 13 C 1.46501 * 120.00016 * 299.99449 * 12 2 1 14 14 S 1.65605 * 120.00229 * 120.00511 * 12 2 1 15 15 O 1.42097 * 106.40219 * 156.45849 * 14 12 2 16 16 O 1.42104 * 106.40114 * 23.53265 * 14 12 2 17 17 N 1.65604 * 107.21205 * 269.99804 * 14 12 2 18 18 C 1.46501 * 119.99542 * 269.99353 * 17 14 12 19 19 C 1.46497 * 120.00132 * 89.99993 * 17 14 12 20 20 C 1.50702 * 109.47239 * 94.99758 * 19 17 14 21 21 C 1.29982 * 118.56578 * 94.99677 * 20 19 17 22 22 C 1.50389 * 122.51161 * 180.38759 * 21 20 19 23 23 C 1.53125 * 109.59556 * 343.37807 * 22 21 20 24 24 O 1.43308 * 108.41399 * 47.82310 * 23 22 21 25 25 C 1.42898 * 113.02169 * 291.85667 * 24 23 22 26 26 H 1.08999 * 109.47107 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47134 * 300.00150 * 1 2 3 28 28 H 1.09004 * 109.47197 * 59.99589 * 1 2 3 29 29 H 0.96998 * 120.00027 * 180.02562 * 7 6 4 30 30 H 1.08994 * 109.47229 * 270.00452 * 13 12 2 31 31 H 1.09006 * 109.46800 * 30.00533 * 13 12 2 32 32 H 1.08999 * 109.47102 * 149.99964 * 13 12 2 33 33 H 1.08996 * 109.47617 * 270.00360 * 18 17 14 34 34 H 1.08996 * 109.47473 * 30.00892 * 18 17 14 35 35 H 1.09003 * 109.46555 * 150.00432 * 18 17 14 36 36 H 1.08992 * 109.47205 * 334.99358 * 19 17 14 37 37 H 1.09000 * 109.46844 * 214.99317 * 19 17 14 38 38 H 1.08004 * 118.74794 * 0.41194 * 21 20 19 39 39 H 1.08997 * 109.45433 * 223.33711 * 22 21 20 40 40 H 1.09003 * 109.42661 * 103.40157 * 22 21 20 41 41 H 1.09002 * 109.68336 * 167.56430 * 23 22 21 42 42 H 1.08999 * 109.68109 * 288.08078 * 23 22 21 43 43 H 1.09004 * 109.32593 * 289.92600 * 25 24 23 44 44 H 1.08996 * 109.25753 * 170.27764 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3215 -1.1205 4.0078 9 1 3.6298 -0.5461 4.4122 10 1 1.3431 -0.9494 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 3.7117 -0.8788 -2.9816 16 8 3.5794 1.1830 -1.5748 17 7 1.9606 0.8092 -3.3998 18 6 1.5813 0.0700 -4.6064 19 6 1.4469 2.1631 -3.1782 20 6 2.3279 3.1575 -3.8897 21 6 1.9871 3.5487 -5.0815 22 6 2.8049 4.5305 -5.8746 23 6 3.7779 5.2590 -4.9433 24 8 4.4381 4.2843 -4.1262 25 6 3.5615 3.6534 -3.1904 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 0.7095 1.1616 3.4844 30 1 2.4157 -2.7376 -0.9719 31 1 0.6903 -2.3001 -0.9847 32 1 1.6237 -2.2851 -2.5003 33 1 2.2998 0.2759 -5.3996 34 1 1.5742 -0.9984 -4.3908 35 1 0.5873 0.3826 -4.9264 36 1 1.4431 2.3801 -2.1101 37 1 0.4311 2.2344 -3.5671 38 1 1.0818 3.1541 -5.5187 39 1 2.1430 5.2559 -6.3474 40 1 3.3669 3.9978 -6.6418 41 1 4.5150 5.8022 -5.5347 42 1 3.2283 5.9565 -4.3112 43 1 3.2769 4.3720 -2.4217 44 1 4.0765 2.8125 -2.7261 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594846140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:57 Heat of formation + Delta-G solvation = -118.697227 kcal Electronic energy + Delta-G solvation = -26798.483281 eV Core-core repulsion = 23070.601408 eV Total energy + Delta-G solvation = -3727.881872 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.48647 -38.39738 -37.89424 -37.60065 -36.87564 -34.56129 -34.50800 -32.36964 -30.90998 -28.43029 -27.28582 -27.00390 -26.60850 -25.63846 -23.59574 -22.48953 -19.97842 -19.18290 -18.76001 -18.57101 -18.15027 -17.56168 -17.13701 -17.01977 -16.69712 -16.05742 -15.69686 -15.13966 -14.96935 -14.87232 -14.72823 -14.48265 -14.09983 -13.94728 -13.75448 -13.60248 -13.54192 -13.33668 -13.16780 -13.12281 -12.98978 -12.82220 -12.74332 -12.60587 -12.51000 -12.20447 -12.14744 -12.05738 -11.84689 -11.57130 -11.15286 -10.62690 -10.50401 -10.08277 -9.92047 -9.62826 -8.11939 -6.24879 -0.39546 1.07734 1.41329 1.43887 1.52363 2.08462 2.42776 2.59406 2.94672 3.16491 3.36875 3.64604 3.75237 3.88931 4.06061 4.13439 4.29843 4.35685 4.43707 4.55689 4.61440 4.67288 4.69506 4.72342 4.79771 4.83201 4.91907 4.97468 5.00708 5.02001 5.05280 5.08243 5.15570 5.16558 5.50550 5.52177 5.62127 5.78446 5.88535 5.90033 6.15060 6.17738 6.31249 6.82044 7.43929 8.91961 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018380 B = 0.004404 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.052196 B = 6356.696504 C = 6926.780572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.274 3.726 3 H 0.028 0.972 4 C -0.540 4.540 5 H 0.052 0.948 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.951 3.049 9 H -0.283 1.283 10 H -0.277 1.277 11 H -0.268 1.268 12 N -0.998 5.998 13 C 0.103 3.897 14 S 2.784 3.216 15 O -1.011 7.011 16 O -1.003 7.003 17 N -1.001 6.001 18 C 0.090 3.910 19 C 0.162 3.838 20 C -0.201 4.201 21 C -0.114 4.114 22 C -0.125 4.125 23 C 0.041 3.959 24 O -0.404 6.404 25 C 0.080 3.920 26 H 0.041 0.959 27 H 0.067 0.933 28 H 0.038 0.962 29 H 0.265 0.735 30 H 0.038 0.962 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.120 0.880 38 H 0.140 0.860 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.267 4.769 -17.870 18.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.169 3.831 3 H 0.045 0.955 4 C -0.579 4.579 5 H 0.070 0.930 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.777 3.223 9 H -0.209 1.209 10 H -0.202 1.202 11 H -0.193 1.193 12 N -0.839 5.839 13 C -0.042 4.042 14 S 2.794 3.206 15 O -0.995 6.995 16 O -0.987 6.987 17 N -0.842 5.842 18 C -0.055 4.055 19 C 0.037 3.963 20 C -0.204 4.204 21 C -0.134 4.134 22 C -0.162 4.162 23 C -0.035 4.035 24 O -0.324 6.324 25 C 0.003 3.997 26 H 0.060 0.940 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.138 0.862 38 H 0.157 0.843 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.132 0.868 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.216 4.844 -17.750 18.678 hybrid contribution -0.046 -0.397 1.415 1.470 sum -3.262 4.447 -16.335 17.241 Atomic orbital electron populations 1.21905 0.96670 1.00206 1.00597 1.18415 0.92328 0.91341 0.80972 0.95463 1.21643 1.31634 1.12998 0.91650 0.92958 1.25572 0.95184 0.95713 1.01435 1.69955 1.37180 1.23561 1.24321 0.85668 0.78006 0.79202 0.79435 1.20940 1.20235 1.19272 1.57686 1.70015 1.20957 1.35263 1.21340 1.01671 0.80482 1.00715 1.01668 0.74018 0.72449 0.72445 1.93497 1.70038 1.61183 1.74795 1.93495 1.75186 1.56529 1.73494 1.57839 1.67607 1.23912 1.34814 1.21681 1.02601 0.95620 0.85554 1.20324 0.97520 0.78333 1.00108 1.21958 0.98816 1.00906 0.98675 1.22466 1.00136 0.97176 0.93601 1.21213 0.98160 0.98557 0.98258 1.22982 0.96998 0.90388 0.93120 1.88112 1.36123 1.56335 1.51791 1.21557 0.90142 0.97443 0.90532 0.93986 0.91466 0.94309 0.92618 0.94367 0.90180 0.90330 0.92529 0.91195 0.87740 0.91478 0.86181 0.84251 0.86849 0.89437 0.86800 0.92288 0.92193 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.95 71.98 0.64 -5.20 16 2 C 0.27 13.30 2.62 44.24 0.12 13.41 16 3 H 0.03 1.50 6.91 -2.39 -0.02 1.48 16 4 C -0.54 -29.35 8.37 25.60 0.21 -29.13 16 5 H 0.05 2.87 7.65 -2.91 -0.02 2.84 16 6 C 0.02 1.14 5.30 84.65 0.45 1.59 16 7 N -0.91 -50.66 11.32 21.45 0.24 -50.42 16 8 Si 0.95 43.44 29.54 68.60 2.03 45.46 16 9 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 10 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 12 N -1.00 -41.18 3.12 -520.46 -1.62 -42.81 16 13 C 0.10 3.60 9.53 127.77 1.22 4.81 16 14 S 2.78 111.15 5.97 -56.49 -0.34 110.81 16 15 O -1.01 -42.95 16.28 -128.00 -2.08 -45.03 16 16 O -1.00 -47.14 12.93 -128.00 -1.65 -48.79 16 17 N -1.00 -29.18 3.23 -543.24 -1.75 -30.94 16 18 C 0.09 1.89 10.33 127.77 1.32 3.21 16 19 C 0.16 4.31 5.43 85.63 0.46 4.78 16 20 C -0.20 -5.32 5.50 -15.58 -0.09 -5.41 16 21 C -0.11 -2.21 9.53 26.60 0.25 -1.96 16 22 C -0.13 -1.99 6.36 29.79 0.19 -1.80 16 23 C 0.04 0.83 6.89 72.02 0.50 1.33 16 24 O -0.40 -12.53 10.85 -148.98 -1.62 -14.14 16 25 C 0.08 2.63 6.64 71.09 0.47 3.10 16 26 H 0.04 1.71 6.66 -2.39 -0.02 1.70 16 27 H 0.07 3.31 6.07 -2.39 -0.01 3.29 16 28 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 29 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 2.63 6.43 -2.38 -0.02 2.61 16 32 H 0.08 2.19 7.37 -2.39 -0.02 2.17 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.45 7.37 -2.39 -0.02 1.44 16 35 H 0.10 1.43 7.94 -2.39 -0.02 1.41 16 36 H 0.07 2.14 7.59 -2.39 -0.02 2.12 16 37 H 0.12 2.25 7.68 -2.39 -0.02 2.24 16 38 H 0.14 1.89 7.83 -2.91 -0.02 1.87 16 39 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 43 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.09 3.65 5.33 -2.39 -0.01 3.64 16 Total: -1.00 -70.92 358.24 -0.06 -70.99 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.98 Total: 16.14 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: 5.75 Total: -11.27 kcal Atomic # 7 Polarization: -121.02 SS G_CDS: -3.13 Total: -124.16 kcal Atomic # 8 Polarization: -102.61 SS G_CDS: -5.35 Total: -107.97 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 111.15 SS G_CDS: -0.34 Total: 110.81 kcal Total: -70.92 -0.06 -70.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594846140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.712 kcal (2) G-P(sol) polarization free energy of solvation -70.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds