Wall clock time and date at job start Fri Apr 10 2020 18:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.47261 * 2 1 4 4 C 1.52998 * 109.47005 * 240.00378 * 2 1 3 5 5 S 1.81408 * 109.47150 * 179.97438 * 4 2 1 6 6 C 1.81395 * 101.92150 * 179.97438 * 5 4 2 7 7 O 1.42098 * 108.57873 * 294.48816 * 5 4 2 8 8 O 1.42103 * 108.57617 * 65.51105 * 5 4 2 9 9 N 1.46495 * 109.47297 * 120.00339 * 2 1 3 10 10 C 1.34786 * 119.99991 * 274.99969 * 9 2 1 11 11 O 1.21587 * 119.99695 * 354.88687 * 10 9 2 12 12 N 1.34772 * 119.99913 * 174.88607 * 10 9 2 13 13 C 1.46931 * 120.62991 * 5.03839 * 12 10 9 14 14 C 1.53194 * 108.77571 * 233.58290 * 13 12 10 15 15 C 1.53041 * 109.31580 * 305.36909 * 14 13 12 16 16 C 1.53046 * 109.53518 * 61.36581 * 15 14 13 17 17 H 1.08998 * 109.49995 * 58.58797 * 16 15 14 18 18 C 1.50697 * 109.49353 * 178.68428 * 16 15 14 19 19 H 1.08006 * 120.00525 * 35.05966 * 18 16 15 20 20 C 1.37879 * 119.99892 * 215.05358 * 18 16 15 21 21 N 1.31519 * 119.99841 * 174.98023 * 20 18 16 22 22 Si 1.86797 * 119.99955 * 354.98770 * 20 18 16 23 23 H 1.48497 * 109.47291 * 94.94771 * 22 20 18 24 24 H 1.48496 * 109.46814 * 214.95106 * 22 20 18 25 25 H 1.48498 * 109.47070 * 334.94855 * 22 20 18 26 26 C 1.46923 * 120.63132 * 184.76267 * 12 10 9 27 27 H 1.08994 * 109.47207 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46932 * 300.00227 * 1 2 3 29 29 H 1.09001 * 109.46839 * 59.99252 * 1 2 3 30 30 H 1.08994 * 109.47203 * 300.00082 * 4 2 1 31 31 H 1.09001 * 109.47020 * 60.00481 * 4 2 1 32 32 H 1.09001 * 109.47357 * 60.00092 * 6 5 4 33 33 H 1.08997 * 109.47318 * 179.97438 * 6 5 4 34 34 H 1.09001 * 109.47142 * 300.00433 * 6 5 4 35 35 H 0.97000 * 120.00374 * 94.99490 * 9 2 1 36 36 H 1.08993 * 109.59007 * 353.37400 * 13 12 10 37 37 H 1.09008 * 109.58225 * 113.65894 * 13 12 10 38 38 H 1.09007 * 109.49273 * 65.32439 * 14 13 12 39 39 H 1.08994 * 109.49728 * 185.41647 * 14 13 12 40 40 H 1.08999 * 109.45895 * 181.38406 * 15 14 13 41 41 H 1.08993 * 109.45562 * 301.35807 * 15 14 13 42 42 H 0.96996 * 119.99794 * 180.02562 * 21 20 18 43 43 H 1.08998 * 109.58780 * 246.20004 * 26 12 10 44 44 H 1.08997 * 109.58717 * 6.62403 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 3.8540 -0.7205 -1.2497 6 6 4.2287 -1.6086 -2.7864 7 8 4.3063 0.6203 -1.3793 8 8 4.3073 -1.5027 -0.1533 9 7 2.0183 -0.6906 1.1961 10 6 2.1471 -0.0183 2.3572 11 8 1.9474 1.1806 2.3907 12 7 2.4971 -0.6750 3.4808 13 6 2.8486 -2.1009 3.4359 14 6 1.9868 -2.8535 4.4545 15 6 2.1522 -2.2085 5.8324 16 6 1.6764 -0.7549 5.7775 17 1 0.6331 -0.7251 5.4634 18 6 1.8096 -0.1302 7.1424 19 1 2.6325 -0.4067 7.7850 20 6 0.8809 0.7944 7.5709 21 7 0.9398 1.2658 8.7973 22 14 -0.4611 1.3774 6.4097 23 1 -1.6883 0.5696 6.6260 24 1 -0.7573 2.8083 6.6742 25 1 -0.0046 1.2177 5.0057 26 6 2.5403 0.0229 4.7730 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 1.6766 -1.7488 -1.2494 31 1 1.6767 -0.2072 -2.1392 32 1 3.8006 -1.0693 -3.6314 33 1 5.3092 -1.6795 -2.9109 34 1 3.8013 -2.6103 -2.7406 35 1 2.2490 -1.6318 1.1525 36 1 2.6592 -2.4927 2.4366 37 1 3.9029 -2.2253 3.6834 38 1 0.9404 -2.8041 4.1528 39 1 2.3038 -3.8953 4.5001 40 1 1.5590 -2.7573 6.5639 41 1 3.2025 -2.2359 6.1224 42 1 0.2863 1.9160 9.0989 43 1 3.5693 0.0679 5.1298 44 1 2.1474 1.0328 4.6562 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595551285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:15 Heat of formation + Delta-G solvation = -96.636651 kcal Electronic energy + Delta-G solvation = -26334.739036 eV Core-core repulsion = 22607.813782 eV Total energy + Delta-G solvation = -3726.925254 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.07450 -37.46904 -37.24662 -36.29117 -35.82262 -33.41911 -32.01414 -31.14187 -30.27002 -29.93559 -28.00816 -25.14166 -24.68520 -21.86903 -21.79682 -20.14007 -19.27753 -18.90840 -17.80739 -17.05798 -16.79421 -16.66382 -16.30593 -15.87890 -15.00894 -14.67825 -14.25054 -13.95334 -13.81824 -13.75486 -13.66101 -13.47000 -13.22486 -13.07605 -12.85672 -12.54300 -12.39443 -12.31989 -12.25912 -12.23036 -12.18322 -11.47268 -11.34105 -11.16732 -10.98158 -10.80358 -10.57047 -10.48891 -9.97789 -9.70812 -9.64622 -9.28463 -9.07694 -9.02582 -8.56409 -7.86013 -6.06152 -4.06222 -0.41531 2.37525 2.91430 3.28684 3.35029 3.46253 3.57686 3.59216 3.64054 4.08275 4.15018 4.30745 4.34204 4.48641 4.61671 4.88492 5.11948 5.17012 5.17322 5.22498 5.28225 5.45516 5.50520 5.59353 5.75136 5.96209 6.06399 6.07919 6.24063 6.33492 6.48981 6.55852 6.69811 6.73462 6.84283 7.02279 7.28829 7.38264 7.48786 7.80955 8.32874 8.54359 8.98083 9.01770 9.57761 11.06415 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021462 B = 0.003884 C = 0.003617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.288910 B = 7206.764490 C = 7739.769577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.172 3.828 3 H 0.106 0.894 4 C -0.625 4.625 5 S 2.420 3.580 6 C -0.662 4.662 7 O -0.931 6.931 8 O -0.926 6.926 9 N -0.761 5.761 10 C 0.706 3.294 11 O -0.590 6.590 12 N -0.621 5.621 13 C 0.116 3.884 14 C -0.137 4.137 15 C -0.103 4.103 16 C 0.007 3.993 17 H 0.034 0.966 18 C -0.512 4.512 19 H 0.075 0.925 20 C 0.075 3.925 21 N -0.897 5.897 22 Si 0.869 3.131 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.253 1.253 26 C 0.128 3.872 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.137 0.863 31 H 0.146 0.854 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.400 0.600 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.264 0.736 43 H 0.059 0.941 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.144 -10.611 -26.030 28.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.065 3.935 3 H 0.124 0.876 4 C -0.754 4.754 5 S 2.600 3.400 6 C -0.810 4.810 7 O -0.928 6.928 8 O -0.923 6.923 9 N -0.423 5.423 10 C 0.408 3.592 11 O -0.468 6.468 12 N -0.357 5.357 13 C -0.008 4.008 14 C -0.175 4.175 15 C -0.141 4.141 16 C -0.013 4.013 17 H 0.052 0.948 18 C -0.550 4.550 19 H 0.093 0.907 20 C -0.127 4.127 21 N -0.534 5.534 22 Si 0.696 3.304 23 H -0.207 1.207 24 H -0.214 1.214 25 H -0.177 1.177 26 C 0.006 3.994 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.155 0.845 31 H 0.165 0.835 32 H 0.145 0.855 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.238 0.762 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.512 -9.238 -25.234 26.989 hybrid contribution -1.239 -0.563 -1.283 1.870 sum 1.273 -9.802 -26.517 28.299 Atomic orbital electron populations 1.22157 0.93785 1.02448 1.03164 1.20307 0.95867 0.97062 0.80217 0.87606 1.30708 1.26751 1.10738 1.07165 1.08004 0.78223 0.76362 0.77361 1.30354 1.12502 1.15215 1.22957 1.93627 1.78554 1.34159 1.86502 1.93603 1.78501 1.71699 1.48533 1.45616 1.73136 1.14305 1.09216 1.15863 0.78045 0.85069 0.80244 1.90897 1.58506 1.12635 1.84800 1.47724 1.70231 1.10189 1.07543 1.21566 0.99349 0.81130 0.98751 1.22019 0.99695 0.98462 0.97353 1.21547 1.01048 0.97679 0.93819 1.19568 0.95097 0.91823 0.94845 0.94781 1.20914 1.12243 1.23723 0.98154 0.90681 1.25066 0.97367 0.95615 0.94692 1.69909 1.36482 1.30691 1.16355 0.86957 0.82205 0.78114 0.83134 1.20700 1.21406 1.17668 1.22491 1.00765 0.97411 0.78707 0.92220 0.90996 0.91524 0.84469 0.83542 0.85470 0.85233 0.85373 0.76177 0.91560 0.91420 0.92278 0.91840 0.92268 0.92715 0.92623 0.92267 0.89890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 2 C 0.17 1.96 2.67 -67.93 -0.18 1.78 16 3 H 0.11 1.44 7.51 -51.93 -0.39 1.05 16 4 C -0.62 -3.58 5.37 37.16 0.20 -3.38 16 5 S 2.42 19.14 5.24 -107.50 -0.56 18.58 16 6 C -0.66 -2.18 10.62 101.05 1.07 -1.11 16 7 O -0.93 -11.82 18.10 -57.83 -1.05 -12.87 16 8 O -0.93 -10.57 16.46 -57.83 -0.95 -11.53 16 9 N -0.76 -10.81 3.99 -58.68 -0.23 -11.05 16 10 C 0.71 13.87 8.26 -86.91 -0.72 13.15 16 11 O -0.59 -13.90 15.41 5.29 0.08 -13.82 16 12 N -0.62 -12.10 2.97 -178.23 -0.53 -12.63 16 13 C 0.12 1.77 6.43 -3.71 -0.02 1.74 16 14 C -0.14 -2.09 6.08 -26.61 -0.16 -2.26 16 15 C -0.10 -1.99 5.15 -26.69 -0.14 -2.13 16 16 C 0.01 0.15 1.80 -91.42 -0.16 -0.01 16 17 H 0.03 0.84 5.59 -51.93 -0.29 0.55 16 18 C -0.51 -14.29 8.86 -34.44 -0.31 -14.59 16 19 H 0.08 2.25 8.06 -52.48 -0.42 1.82 16 20 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 21 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 22 Si 0.87 22.48 26.64 -169.99 -4.53 17.95 16 23 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 25 H -0.25 -6.60 6.01 56.52 0.34 -6.26 16 26 C 0.13 2.91 5.53 -3.49 -0.02 2.89 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.14 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.15 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.13 0.17 8.14 -51.92 -0.42 -0.25 16 33 H 0.13 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 35 H 0.40 4.68 5.23 -40.82 -0.21 4.47 16 36 H 0.07 0.82 5.57 -51.93 -0.29 0.53 16 37 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 43 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.08 2.13 5.96 -51.93 -0.31 1.82 16 LS Contribution 358.92 15.07 5.41 5.41 Total: -1.00 -39.80 358.92 -8.80 -48.60 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.03 Total: 1.32 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -0.18 Total: -3.08 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.01 Total: -50.57 kcal Atomic # 8 Polarization: -36.29 SS G_CDS: -1.92 Total: -38.21 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.53 Total: 17.95 kcal Atomic # 16 Polarization: 19.14 SS G_CDS: -0.56 Total: 18.58 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -39.80 -8.80 -48.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595551285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.033 kcal (2) G-P(sol) polarization free energy of solvation -39.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds