Wall clock time and date at job start Fri Apr 10 2020 18:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.47176 * 2 1 4 4 C 1.52993 * 109.47283 * 120.00358 * 2 1 3 5 5 S 1.81396 * 109.47207 * 185.00026 * 4 2 1 6 6 C 1.81404 * 101.92102 * 180.02562 * 5 4 2 7 7 O 1.42104 * 108.57982 * 294.48377 * 5 4 2 8 8 O 1.42094 * 108.57921 * 65.51411 * 5 4 2 9 9 N 1.46506 * 109.47081 * 240.00744 * 2 1 3 10 10 C 1.34770 * 120.00054 * 84.99753 * 9 2 1 11 11 O 1.21581 * 120.00235 * 4.99149 * 10 9 2 12 12 N 1.34785 * 119.99731 * 184.98853 * 10 9 2 13 13 C 1.46925 * 120.62993 * 354.78143 * 12 10 9 14 14 C 1.53189 * 108.77438 * 233.63032 * 13 12 10 15 15 C 1.53049 * 109.31088 * 305.36366 * 14 13 12 16 16 C 1.53043 * 109.53627 * 61.36483 * 15 14 13 17 17 H 1.09003 * 109.49434 * 58.61993 * 16 15 14 18 18 C 1.50695 * 109.49460 * 178.68550 * 16 15 14 19 19 H 1.08002 * 120.00359 * 359.97438 * 18 16 15 20 20 C 1.37877 * 119.99876 * 180.27727 * 18 16 15 21 21 N 1.31515 * 120.00292 * 359.72283 * 20 18 16 22 22 Si 1.86799 * 120.00074 * 179.72319 * 20 18 16 23 23 H 1.48505 * 109.47359 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47164 * 120.00031 * 22 20 18 25 25 H 1.48505 * 109.47471 * 240.00036 * 22 20 18 26 26 C 1.46927 * 120.62967 * 174.79614 * 12 10 9 27 27 H 1.08992 * 109.47288 * 299.99637 * 1 2 3 28 28 H 1.09006 * 109.46809 * 59.99695 * 1 2 3 29 29 H 1.08997 * 109.47172 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47399 * 305.00308 * 4 2 1 31 31 H 1.09006 * 109.47171 * 64.99694 * 4 2 1 32 32 H 1.09001 * 109.47288 * 59.99848 * 6 5 4 33 33 H 1.08997 * 109.46944 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.47338 * 299.99896 * 6 5 4 35 35 H 0.97002 * 119.99217 * 265.00155 * 9 2 1 36 36 H 1.09000 * 109.58651 * 113.84081 * 13 12 10 37 37 H 1.09005 * 109.70256 * 353.48198 * 13 12 10 38 38 H 1.08999 * 109.49689 * 185.41585 * 14 13 12 39 39 H 1.08996 * 109.49982 * 65.31453 * 14 13 12 40 40 H 1.09004 * 109.46020 * 301.34608 * 15 14 13 41 41 H 1.09000 * 109.46126 * 181.38844 * 15 14 13 42 42 H 0.96992 * 120.00604 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.58212 * 6.58794 * 26 12 10 44 44 H 1.08990 * 109.58693 * 246.15747 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2491 5 16 3.8479 -0.5933 1.3255 6 6 4.2236 -1.4993 2.8515 7 8 4.3992 -1.3080 0.2280 8 8 4.1977 0.7714 1.5109 9 7 2.0184 -0.6905 -1.1963 10 6 2.1471 -0.0180 -2.3572 11 8 1.9452 1.1804 -2.3911 12 7 2.4996 -0.6742 -3.4805 13 6 2.8575 -2.0984 -3.4345 14 6 4.2322 -2.2826 -4.0849 15 6 4.2095 -1.6854 -5.4939 16 6 3.9118 -0.1865 -5.4097 17 1 4.6717 0.3016 -4.7995 18 6 3.9216 0.4067 -6.7950 19 1 4.1206 -0.2219 -7.6503 20 6 3.6825 1.7533 -6.9699 21 7 3.4406 2.5190 -5.9284 22 14 3.7023 2.4902 -8.6863 23 1 3.9970 1.4255 -9.6788 24 1 2.3768 3.0906 -8.9826 25 1 4.7495 3.5404 -8.7622 26 6 2.5334 0.0213 -4.7743 27 1 -0.3633 0.5137 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6054 -0.2619 2.1369 31 1 1.7517 -1.7716 1.2054 32 1 3.8710 -2.5267 2.7603 33 1 5.3006 -1.4979 3.0191 34 1 3.7248 -1.0174 3.6924 35 1 2.2490 -1.6317 -1.1528 36 1 2.1142 -2.6798 -3.9801 37 1 2.8957 -2.4344 -2.3982 38 1 4.4672 -3.3453 -4.1440 39 1 4.9887 -1.7748 -3.4867 40 1 3.4359 -2.1767 -6.0842 41 1 5.1791 -1.8370 -5.9683 42 1 3.2728 3.4664 -6.0514 43 1 2.3585 1.0863 -4.6213 44 1 1.7639 -0.3872 -5.4290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595551287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:19 Heat of formation + Delta-G solvation = -95.901799 kcal Electronic energy + Delta-G solvation = -26376.295003 eV Core-core repulsion = 22649.401615 eV Total energy + Delta-G solvation = -3726.893388 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.78939 -37.22415 -37.08325 -36.11071 -35.58731 -33.35721 -31.87143 -30.87869 -29.93592 -29.46346 -27.88500 -24.97350 -24.44662 -21.85230 -21.55870 -20.03368 -19.13837 -18.74926 -17.47736 -16.90672 -16.60562 -16.21851 -15.99832 -15.68541 -14.84404 -14.42922 -14.13799 -13.81462 -13.71350 -13.57922 -13.53812 -13.32509 -12.99019 -12.96443 -12.59350 -12.43699 -12.17486 -12.13711 -12.07424 -12.02755 -11.76801 -11.34030 -11.18607 -10.92154 -10.78331 -10.66799 -10.38972 -10.26775 -10.12063 -9.76205 -9.37298 -8.98383 -8.84978 -8.82091 -8.32766 -7.54624 -5.88395 -3.97603 -0.26749 2.52798 3.14536 3.37251 3.44902 3.45075 3.48071 3.77056 3.87999 4.22507 4.34042 4.45739 4.48041 4.54945 4.75558 5.00481 5.24067 5.28363 5.29461 5.40613 5.43517 5.62124 5.65293 5.75604 5.88479 6.10515 6.15625 6.32290 6.44944 6.69686 6.77034 6.80601 6.93027 7.10457 7.14062 7.45199 7.58903 7.84271 8.04454 8.16518 8.51432 8.65090 9.06423 9.31422 9.67457 11.16540 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019173 B = 0.003756 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1460.070567 B = 7452.850956 C = 7734.175708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.173 3.827 3 H 0.105 0.895 4 C -0.625 4.625 5 S 2.419 3.581 6 C -0.663 4.663 7 O -0.922 6.922 8 O -0.930 6.930 9 N -0.761 5.761 10 C 0.704 3.296 11 O -0.580 6.580 12 N -0.619 5.619 13 C 0.115 3.885 14 C -0.134 4.134 15 C -0.109 4.109 16 C 0.037 3.963 17 H 0.030 0.970 18 C -0.520 4.520 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.877 5.877 22 Si 0.891 3.109 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.285 1.285 26 C 0.129 3.871 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.145 0.855 31 H 0.136 0.864 32 H 0.126 0.874 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.396 0.604 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.262 0.738 43 H 0.123 0.877 44 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.174 -12.700 19.465 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.066 3.934 3 H 0.123 0.877 4 C -0.754 4.754 5 S 2.599 3.401 6 C -0.811 4.811 7 O -0.919 6.919 8 O -0.927 6.927 9 N -0.423 5.423 10 C 0.405 3.595 11 O -0.457 6.457 12 N -0.355 5.355 13 C -0.009 4.009 14 C -0.172 4.172 15 C -0.147 4.147 16 C 0.018 3.982 17 H 0.048 0.952 18 C -0.559 4.559 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.515 5.515 22 Si 0.719 3.281 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.211 1.211 26 C 0.008 3.992 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.163 0.837 31 H 0.154 0.846 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.233 0.767 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.141 0.859 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.784 -11.198 18.881 22.276 hybrid contribution -0.418 -0.619 -0.122 0.757 sum -4.203 -11.817 18.759 22.565 Atomic orbital electron populations 1.22142 0.93958 1.02193 1.03057 1.20267 0.95677 0.97095 0.80371 0.87704 1.30717 1.26785 1.10624 1.07227 1.08083 0.78280 0.76469 0.77303 1.30372 1.12443 1.15350 1.22955 1.93627 1.75300 1.74524 1.48436 1.93630 1.81179 1.31766 1.86170 1.45579 1.73442 1.14014 1.09217 1.15881 0.78328 0.85124 0.80129 1.90934 1.57962 1.12281 1.84493 1.47754 1.69600 1.09991 1.08131 1.21498 0.96905 0.82913 0.99572 1.21937 0.96608 0.99788 0.98860 1.21613 1.00375 0.99105 0.93582 1.19003 0.93217 0.89783 0.96187 0.95176 1.21112 1.49200 0.93358 0.92188 0.92397 1.25066 0.95075 0.97308 0.96639 1.69919 1.47108 1.05749 1.28718 0.86563 0.77562 0.79166 0.84834 1.19860 1.21052 1.21082 1.22183 0.98809 1.00088 0.78086 0.91684 0.91003 0.92404 0.83687 0.84610 0.85478 0.85299 0.85567 0.76683 0.92372 0.91769 0.92436 0.91764 0.93339 0.93148 0.92760 0.85928 0.94260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.48 37.16 0.35 -1.30 16 2 C 0.17 2.16 2.61 -67.93 -0.18 1.99 16 3 H 0.11 1.60 7.51 -51.93 -0.39 1.21 16 4 C -0.62 -4.30 5.33 37.15 0.20 -4.10 16 5 S 2.42 23.09 5.28 -107.50 -0.57 22.52 16 6 C -0.66 -3.01 10.62 101.05 1.07 -1.93 16 7 O -0.92 -12.46 16.90 -57.83 -0.98 -13.43 16 8 O -0.93 -13.44 18.10 -57.83 -1.05 -14.49 16 9 N -0.76 -11.74 4.07 -58.67 -0.24 -11.98 16 10 C 0.70 15.06 8.26 -86.92 -0.72 14.34 16 11 O -0.58 -14.98 15.39 5.29 0.08 -14.90 16 12 N -0.62 -13.23 2.97 -178.50 -0.53 -13.76 16 13 C 0.12 1.93 6.38 -3.71 -0.02 1.91 16 14 C -0.13 -2.36 6.08 -26.61 -0.16 -2.52 16 15 C -0.11 -2.29 5.11 -26.68 -0.14 -2.43 16 16 C 0.04 0.97 2.25 -91.65 -0.21 0.76 16 17 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 18 C -0.52 -14.56 8.56 -34.44 -0.29 -14.85 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 20 C 0.06 1.77 5.31 -17.82 -0.09 1.68 16 21 N -0.88 -26.54 11.41 55.43 0.63 -25.90 16 22 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 26 C 0.13 3.27 5.42 -3.71 -0.02 3.25 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.14 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.14 0.49 8.14 -51.92 -0.42 0.06 16 32 H 0.13 0.29 8.14 -51.92 -0.42 -0.13 16 33 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 35 H 0.40 5.05 5.69 -40.82 -0.23 4.82 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.89 5.65 -51.93 -0.29 0.59 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 43 H 0.12 3.63 5.13 -51.93 -0.27 3.36 16 44 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 362.56 15.07 5.46 5.46 Total: -1.00 -39.53 362.56 -9.48 -49.01 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.07 Total: 3.88 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -0.21 Total: -3.21 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.14 Total: -51.64 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -1.94 Total: -42.82 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 23.09 SS G_CDS: -0.57 Total: 22.52 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -39.53 -9.48 -49.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595551287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.893 kcal (2) G-P(sol) polarization free energy of solvation -39.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds