Wall clock time and date at job start Fri Apr 10 2020 18:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47331 * 2 1 4 4 C 1.52992 * 109.47247 * 119.99986 * 2 1 3 5 5 S 1.81406 * 109.47038 * 184.99976 * 4 2 1 6 6 C 1.81407 * 101.91888 * 180.02562 * 5 4 2 7 7 O 1.42100 * 108.57782 * 294.48627 * 5 4 2 8 8 O 1.42094 * 108.57975 * 65.51524 * 5 4 2 9 9 N 1.46503 * 109.47008 * 240.00237 * 2 1 3 10 10 C 1.34771 * 120.00053 * 84.99794 * 9 2 1 11 11 O 1.21592 * 120.00325 * 5.07772 * 10 9 2 12 12 N 1.34780 * 120.00132 * 185.07681 * 10 9 2 13 13 C 1.47203 * 120.81225 * 355.11900 * 12 10 9 14 14 C 1.53194 * 108.85646 * 126.33267 * 13 12 10 15 15 C 1.53034 * 109.31197 * 54.65212 * 14 13 12 16 16 C 1.53044 * 109.53744 * 298.63435 * 15 14 13 17 17 H 1.08994 * 109.49851 * 301.41106 * 16 15 14 18 18 C 1.50697 * 109.52155 * 181.33107 * 16 15 14 19 19 H 1.08005 * 120.00460 * 0.14842 * 18 16 15 20 20 C 1.37886 * 119.99882 * 180.14722 * 18 16 15 21 21 N 1.31514 * 119.99492 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 120.00118 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46844 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47275 * 119.99727 * 22 20 18 25 25 H 1.48497 * 109.46955 * 239.99734 * 22 20 18 26 26 C 1.46928 * 120.63321 * 174.96871 * 12 10 9 27 27 H 1.09005 * 109.47191 * 59.99603 * 1 2 3 28 28 H 1.08990 * 109.46901 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46834 * 299.99830 * 1 2 3 30 30 H 1.09004 * 109.47331 * 304.99703 * 4 2 1 31 31 H 1.08996 * 109.47447 * 65.00145 * 4 2 1 32 32 H 1.09000 * 109.47282 * 60.00005 * 6 5 4 33 33 H 1.09000 * 109.47062 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47121 * 300.00023 * 6 5 4 35 35 H 0.97003 * 119.99661 * 264.99921 * 9 2 1 36 36 H 1.09001 * 109.53462 * 6.53022 * 13 12 10 37 37 H 1.08999 * 109.56354 * 246.15651 * 13 12 10 38 38 H 1.09003 * 109.49748 * 294.69610 * 14 13 12 39 39 H 1.09005 * 109.49666 * 174.60483 * 14 13 12 40 40 H 1.09003 * 109.45921 * 178.61390 * 15 14 13 41 41 H 1.09004 * 109.45108 * 58.64506 * 15 14 13 42 42 H 0.97003 * 119.99262 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.58423 * 113.82632 * 26 12 10 44 44 H 1.08999 * 109.58299 * 353.54698 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 16 3.8480 -0.5932 1.3255 6 6 4.2236 -1.4992 2.8516 7 8 4.3992 -1.3079 0.2280 8 8 4.1978 0.7715 1.5108 9 7 2.0184 -0.6906 -1.1962 10 6 2.1470 -0.0182 -2.3571 11 8 1.9467 1.1806 -2.3909 12 7 2.4977 -0.6747 -3.4808 13 6 2.8481 -2.1038 -3.4410 14 6 1.9857 -2.8537 -4.4611 15 6 2.1512 -2.2055 -5.8375 16 6 1.6763 -0.7518 -5.7791 17 1 0.6330 -0.7223 -5.4649 18 6 1.8089 -0.1236 -7.1425 19 1 2.1913 -0.7035 -7.9695 20 6 1.4419 1.1916 -7.3341 21 7 0.9758 1.8976 -6.3272 22 14 1.6056 1.9702 -9.0243 23 1 2.1495 0.9711 -9.9789 24 1 0.2713 2.4249 -9.4912 25 1 2.5256 3.1333 -8.9464 26 6 2.5352 0.0218 -4.7740 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6055 -0.2617 2.1370 31 1 1.7518 -1.7714 1.2056 32 1 3.8711 -2.5265 2.7604 33 1 5.3007 -1.4977 3.0192 34 1 3.7248 -1.0172 3.6924 35 1 2.2490 -1.6318 -1.1527 36 1 2.6586 -2.4978 -2.4425 37 1 3.9016 -2.2285 -3.6913 38 1 0.9394 -2.8044 -4.1592 39 1 2.3022 -3.8957 -4.5091 40 1 1.5576 -2.7524 -6.5701 41 1 3.2016 -2.2330 -6.1277 42 1 0.7180 2.8230 -6.4620 43 1 3.5632 0.0706 -5.1331 44 1 2.1408 1.0312 -4.6569 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595551288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:22 Heat of formation + Delta-G solvation = -96.806901 kcal Electronic energy + Delta-G solvation = -26259.896063 eV Core-core repulsion = 22532.963427 eV Total energy + Delta-G solvation = -3726.932637 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.78330 -37.23838 -37.12989 -36.16518 -35.60202 -33.37125 -31.89181 -30.89836 -29.96857 -29.49166 -27.86084 -24.99706 -24.46203 -21.86142 -21.59152 -20.04157 -19.17276 -18.76866 -17.51154 -16.94286 -16.60957 -16.24507 -16.02931 -15.72141 -14.71203 -14.59947 -14.14268 -13.89073 -13.71211 -13.63561 -13.57270 -13.24759 -13.00477 -12.97055 -12.61550 -12.46919 -12.20326 -12.17625 -12.12947 -12.00244 -11.83903 -11.33044 -11.17720 -10.93679 -10.81931 -10.68406 -10.41799 -10.30662 -10.16295 -9.80594 -9.38923 -9.03168 -8.88829 -8.81135 -8.35788 -7.55763 -5.92553 -4.01134 -0.30616 2.48721 3.14446 3.35627 3.40325 3.43497 3.46526 3.73268 3.89435 4.21560 4.32102 4.42145 4.45770 4.52754 4.72712 5.01256 5.23547 5.28297 5.32258 5.37298 5.40478 5.59929 5.65837 5.71826 5.91186 6.09878 6.24106 6.25859 6.39717 6.65427 6.73810 6.78036 6.88168 7.06076 7.14571 7.42533 7.56963 7.80986 8.00151 8.13272 8.47970 8.64757 9.02540 9.31021 9.64170 11.12582 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021624 B = 0.003540 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.543932 B = 7906.597562 C = 8288.986233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.174 3.826 3 H 0.104 0.896 4 C -0.624 4.624 5 S 2.419 3.581 6 C -0.662 4.662 7 O -0.925 6.925 8 O -0.932 6.932 9 N -0.761 5.761 10 C 0.706 3.294 11 O -0.582 6.582 12 N -0.619 5.619 13 C 0.116 3.884 14 C -0.133 4.133 15 C -0.110 4.110 16 C 0.040 3.960 17 H 0.028 0.972 18 C -0.520 4.520 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.879 5.879 22 Si 0.892 3.108 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.284 1.284 26 C 0.128 3.872 27 H 0.073 0.927 28 H 0.057 0.943 29 H 0.064 0.936 30 H 0.145 0.855 31 H 0.136 0.864 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.126 0.874 35 H 0.396 0.604 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.050 0.950 41 H 0.050 0.950 42 H 0.262 0.738 43 H 0.039 0.961 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.197 -11.119 20.444 23.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.067 3.933 3 H 0.122 0.878 4 C -0.753 4.753 5 S 2.600 3.400 6 C -0.811 4.811 7 O -0.922 6.922 8 O -0.929 6.929 9 N -0.422 5.422 10 C 0.407 3.593 11 O -0.459 6.459 12 N -0.355 5.355 13 C -0.009 4.009 14 C -0.172 4.172 15 C -0.147 4.147 16 C 0.020 3.980 17 H 0.046 0.954 18 C -0.559 4.559 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.516 5.516 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.210 1.210 26 C 0.007 3.993 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.164 0.836 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.233 0.767 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.577 -9.622 19.859 22.218 hybrid contribution -0.393 -0.607 -0.115 0.732 sum 2.184 -10.229 19.745 22.344 Atomic orbital electron populations 1.22153 0.93827 1.02313 1.03187 1.20265 0.95830 0.96940 0.80297 0.87762 1.30709 1.26498 1.10733 1.07311 1.08032 0.78326 0.76396 0.77273 1.30364 1.12400 1.15396 1.22917 1.93615 1.75454 1.74540 1.48582 1.93623 1.81287 1.31829 1.86204 1.45563 1.73456 1.13979 1.09238 1.15851 0.78153 0.85161 0.80112 1.90924 1.57959 1.12488 1.84560 1.47802 1.70081 1.09642 1.07977 1.21557 0.99005 0.81963 0.98335 1.21957 0.99751 0.98030 0.97434 1.21613 1.00486 0.98881 0.93765 1.18989 0.95420 0.89161 0.94386 0.95404 1.21114 1.43763 0.96597 0.94388 0.92357 1.25061 0.94869 0.97421 0.96712 1.69907 1.42514 1.09141 1.30070 0.86545 0.77667 0.79328 0.84503 1.19836 1.21106 1.20974 1.22193 0.98974 1.00196 0.77919 0.90763 0.92365 0.91723 0.83645 0.84559 0.85433 0.85329 0.85519 0.76667 0.91977 0.91860 0.92289 0.92355 0.93150 0.93157 0.92756 0.94219 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.48 37.16 0.35 -1.44 16 2 C 0.17 2.20 2.61 -67.93 -0.18 2.02 16 3 H 0.10 1.57 7.51 -51.93 -0.39 1.18 16 4 C -0.62 -4.23 5.33 37.15 0.20 -4.03 16 5 S 2.42 21.57 5.28 -107.50 -0.57 21.00 16 6 C -0.66 -2.70 10.62 101.05 1.07 -1.62 16 7 O -0.92 -11.76 16.90 -57.83 -0.98 -12.73 16 8 O -0.93 -12.69 18.10 -57.83 -1.05 -13.73 16 9 N -0.76 -11.84 4.07 -58.67 -0.24 -12.08 16 10 C 0.71 15.15 8.27 -86.92 -0.72 14.43 16 11 O -0.58 -15.01 15.41 5.28 0.08 -14.93 16 12 N -0.62 -13.26 2.98 -178.27 -0.53 -13.79 16 13 C 0.12 1.94 6.44 -3.56 -0.02 1.91 16 14 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 15 C -0.11 -2.24 5.11 -26.69 -0.14 -2.37 16 16 C 0.04 1.00 2.25 -91.65 -0.21 0.80 16 17 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 18 C -0.52 -14.36 8.57 -34.44 -0.29 -14.66 16 19 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.88 -26.14 11.39 55.43 0.63 -25.51 16 22 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 C 0.13 3.25 5.38 -3.71 -0.02 3.23 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.15 0.49 8.14 -51.92 -0.42 0.07 16 31 H 0.14 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.13 0.25 8.14 -51.92 -0.42 -0.17 16 33 H 0.13 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 35 H 0.40 5.10 5.68 -40.82 -0.23 4.87 16 36 H 0.06 0.84 5.59 -51.93 -0.29 0.55 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.12 3.62 5.14 -51.93 -0.27 3.35 16 LS Contribution 362.54 15.07 5.46 5.46 Total: -1.00 -38.87 362.54 -9.48 -48.35 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -7.06 Total: 3.77 kcal Atomic # 6 Polarization: -2.24 SS G_CDS: -0.21 Total: -2.45 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: -0.14 Total: -51.38 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -1.94 Total: -41.40 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 21.57 SS G_CDS: -0.57 Total: 21.00 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -38.87 -9.48 -48.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595551288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.454 kcal (2) G-P(sol) polarization free energy of solvation -38.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds