Wall clock time and date at job start Fri Apr 10 2020 18:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.47331 * 2 1 4 4 C 1.52992 * 109.47247 * 119.99986 * 2 1 3 5 5 S 1.81406 * 109.47038 * 184.99976 * 4 2 1 6 6 C 1.81407 * 101.91888 * 180.02562 * 5 4 2 7 7 O 1.42100 * 108.57782 * 294.48627 * 5 4 2 8 8 O 1.42094 * 108.57975 * 65.51524 * 5 4 2 9 9 N 1.46503 * 109.47008 * 240.00237 * 2 1 3 10 10 C 1.34771 * 120.00053 * 84.99794 * 9 2 1 11 11 O 1.21592 * 120.00325 * 5.07772 * 10 9 2 12 12 N 1.34780 * 120.00132 * 185.07681 * 10 9 2 13 13 C 1.47203 * 120.81225 * 355.11900 * 12 10 9 14 14 C 1.53194 * 108.85646 * 126.33267 * 13 12 10 15 15 C 1.53034 * 109.31197 * 54.65212 * 14 13 12 16 16 C 1.53044 * 109.53744 * 298.63435 * 15 14 13 17 17 H 1.08994 * 109.49851 * 301.41106 * 16 15 14 18 18 C 1.50697 * 109.52155 * 181.33107 * 16 15 14 19 19 H 1.08005 * 120.00460 * 0.14842 * 18 16 15 20 20 C 1.37886 * 119.99882 * 180.14722 * 18 16 15 21 21 N 1.31514 * 119.99492 * 359.97438 * 20 18 16 22 22 Si 1.86802 * 120.00118 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.46844 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47275 * 119.99727 * 22 20 18 25 25 H 1.48497 * 109.46955 * 239.99734 * 22 20 18 26 26 C 1.46928 * 120.63321 * 174.96871 * 12 10 9 27 27 H 1.09005 * 109.47191 * 59.99603 * 1 2 3 28 28 H 1.08990 * 109.46901 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46834 * 299.99830 * 1 2 3 30 30 H 1.09004 * 109.47331 * 304.99703 * 4 2 1 31 31 H 1.08996 * 109.47447 * 65.00145 * 4 2 1 32 32 H 1.09000 * 109.47282 * 60.00005 * 6 5 4 33 33 H 1.09000 * 109.47062 * 180.02562 * 6 5 4 34 34 H 1.09002 * 109.47121 * 300.00023 * 6 5 4 35 35 H 0.97003 * 119.99661 * 264.99921 * 9 2 1 36 36 H 1.09001 * 109.53462 * 6.53022 * 13 12 10 37 37 H 1.08999 * 109.56354 * 246.15651 * 13 12 10 38 38 H 1.09003 * 109.49748 * 294.69610 * 14 13 12 39 39 H 1.09005 * 109.49666 * 174.60483 * 14 13 12 40 40 H 1.09003 * 109.45921 * 178.61390 * 15 14 13 41 41 H 1.09004 * 109.45108 * 58.64506 * 15 14 13 42 42 H 0.97003 * 119.99262 * 179.97438 * 21 20 18 43 43 H 1.09001 * 109.58423 * 113.82632 * 26 12 10 44 44 H 1.08999 * 109.58299 * 353.54698 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 16 3.8480 -0.5932 1.3255 6 6 4.2236 -1.4992 2.8516 7 8 4.3992 -1.3079 0.2280 8 8 4.1978 0.7715 1.5108 9 7 2.0184 -0.6906 -1.1962 10 6 2.1470 -0.0182 -2.3571 11 8 1.9467 1.1806 -2.3909 12 7 2.4977 -0.6747 -3.4808 13 6 2.8481 -2.1038 -3.4410 14 6 1.9857 -2.8537 -4.4611 15 6 2.1512 -2.2055 -5.8375 16 6 1.6763 -0.7518 -5.7791 17 1 0.6330 -0.7223 -5.4649 18 6 1.8089 -0.1236 -7.1425 19 1 2.1913 -0.7035 -7.9695 20 6 1.4419 1.1916 -7.3341 21 7 0.9758 1.8976 -6.3272 22 14 1.6056 1.9702 -9.0243 23 1 2.1495 0.9711 -9.9789 24 1 0.2713 2.4249 -9.4912 25 1 2.5256 3.1333 -8.9464 26 6 2.5352 0.0218 -4.7740 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.6055 -0.2617 2.1370 31 1 1.7518 -1.7714 1.2056 32 1 3.8711 -2.5265 2.7604 33 1 5.3007 -1.4977 3.0192 34 1 3.7248 -1.0172 3.6924 35 1 2.2490 -1.6318 -1.1527 36 1 2.6586 -2.4978 -2.4425 37 1 3.9016 -2.2285 -3.6913 38 1 0.9394 -2.8044 -4.1592 39 1 2.3022 -3.8957 -4.5091 40 1 1.5576 -2.7524 -6.5701 41 1 3.2016 -2.2330 -6.1277 42 1 0.7180 2.8230 -6.4620 43 1 3.5632 0.0706 -5.1331 44 1 2.1408 1.0312 -4.6569 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595551288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:21 Heat of formation + Delta-G solvation = -128.311444 kcal Electronic energy + Delta-G solvation = -26261.262203 eV Core-core repulsion = 22532.963427 eV Total energy + Delta-G solvation = -3728.298776 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.37477 -38.76512 -37.94262 -37.14813 -36.82147 -35.32407 -33.63244 -32.22452 -31.31036 -30.35874 -28.61440 -27.02629 -26.11281 -23.47801 -22.85301 -21.60667 -20.52266 -19.79264 -19.09239 -18.22617 -17.69427 -17.61840 -16.93104 -16.75606 -16.52281 -16.27820 -15.65318 -15.30351 -15.18067 -14.51845 -14.49809 -14.34239 -14.14439 -13.94846 -13.85996 -13.66360 -13.64241 -13.47362 -13.04555 -13.01088 -12.95214 -12.90417 -12.63052 -12.28134 -12.24962 -12.16029 -11.91692 -11.81731 -11.62386 -11.37023 -11.22784 -10.95641 -10.82612 -10.51667 -10.23505 -9.28028 -8.09542 -6.26783 -0.91288 1.39650 1.41507 1.53717 1.73165 1.93711 2.22958 2.42516 2.76920 2.97947 3.17551 3.21357 3.48358 3.93894 4.05723 4.13569 4.16323 4.19942 4.27557 4.30811 4.43771 4.61766 4.67293 4.68788 4.78881 4.81745 4.85425 4.95914 5.01921 5.11722 5.26216 5.27765 5.29736 5.33586 5.52176 5.57417 5.64832 5.88966 5.97926 6.15703 6.36810 6.86457 7.10733 7.43084 7.66240 8.93963 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021624 B = 0.003540 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.543932 B = 7906.597562 C = 8288.986233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.156 3.844 3 H 0.066 0.934 4 C -0.603 4.603 5 S 2.395 3.605 6 C -0.628 4.628 7 O -0.977 6.977 8 O -0.999 6.999 9 N -0.739 5.739 10 C 0.695 3.305 11 O -0.639 6.639 12 N -0.627 5.627 13 C 0.108 3.892 14 C -0.123 4.123 15 C -0.105 4.105 16 C 0.040 3.960 17 H -0.011 1.011 18 C -0.535 4.535 19 H 0.063 0.937 20 C 0.007 3.993 21 N -0.915 5.915 22 Si 0.959 3.041 23 H -0.259 1.259 24 H -0.281 1.281 25 H -0.285 1.285 26 C 0.141 3.859 27 H 0.024 0.976 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.190 0.810 31 H 0.184 0.816 32 H 0.163 0.837 33 H 0.132 0.868 34 H 0.157 0.843 35 H 0.411 0.589 36 H 0.101 0.899 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.106 0.894 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.259 0.741 43 H 0.028 0.972 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.126 -14.943 22.883 27.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.050 3.950 3 H 0.084 0.916 4 C -0.733 4.733 5 S 2.584 3.416 6 C -0.781 4.781 7 O -0.974 6.974 8 O -0.996 6.996 9 N -0.401 5.401 10 C 0.396 3.604 11 O -0.521 6.521 12 N -0.363 5.363 13 C -0.014 4.014 14 C -0.161 4.161 15 C -0.143 4.143 16 C 0.021 3.979 17 H 0.007 0.993 18 C -0.573 4.573 19 H 0.081 0.919 20 C -0.192 4.192 21 N -0.554 5.554 22 Si 0.785 3.215 23 H -0.183 1.183 24 H -0.207 1.207 25 H -0.211 1.211 26 C 0.018 3.982 27 H 0.043 0.957 28 H 0.103 0.897 29 H 0.115 0.885 30 H 0.208 0.792 31 H 0.201 0.799 32 H 0.181 0.819 33 H 0.150 0.850 34 H 0.175 0.825 35 H 0.252 0.748 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.046 0.954 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.526 -13.499 22.291 26.182 hybrid contribution -0.389 0.532 -0.740 0.991 sum 2.137 -12.966 21.551 25.241 Atomic orbital electron populations 1.22120 0.92726 1.03749 1.02375 1.20529 0.96831 0.96050 0.81554 0.91567 1.30562 1.23969 1.13256 1.05474 1.08165 0.79220 0.75438 0.78799 1.30050 1.13242 1.16151 1.18646 1.93547 1.76877 1.74691 1.52302 1.93550 1.82741 1.35891 1.87458 1.45384 1.72110 1.14436 1.08161 1.16188 0.77887 0.84747 0.81542 1.90875 1.60261 1.15303 1.85668 1.47735 1.70264 1.11618 1.06650 1.21921 0.99638 0.78980 1.00830 1.21905 0.99680 1.00056 0.94453 1.21508 1.00436 0.95565 0.96757 1.18906 0.93199 0.92628 0.93189 0.99312 1.21559 1.43134 0.96956 0.95678 0.91876 1.25937 0.94622 0.98163 1.00458 1.70117 1.43820 1.09134 1.32333 0.85483 0.77616 0.78380 0.80042 1.18290 1.20707 1.21067 1.21606 0.97680 0.98616 0.80274 0.95669 0.89674 0.88531 0.79235 0.79875 0.81904 0.84965 0.82451 0.74822 0.88136 0.90958 0.92669 0.87562 0.92637 0.92718 0.93235 0.95382 0.90706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.48 71.98 0.68 -2.62 16 2 C 0.16 3.86 2.61 44.99 0.12 3.98 16 3 H 0.07 2.16 7.51 -2.39 -0.02 2.14 16 4 C -0.60 -5.85 5.33 71.98 0.38 -5.46 16 5 S 2.40 38.86 5.28 -56.49 -0.30 38.56 16 6 C -0.63 -1.91 10.62 113.37 1.20 -0.71 16 7 O -0.98 -24.14 16.90 -127.37 -2.15 -26.29 16 8 O -1.00 -28.20 18.10 -127.37 -2.31 -30.51 16 9 N -0.74 -22.92 4.07 -457.81 -1.86 -24.78 16 10 C 0.69 31.45 8.27 179.06 1.48 32.93 16 11 O -0.64 -36.01 15.41 -4.01 -0.06 -36.07 16 12 N -0.63 -27.84 2.98 -836.19 -2.50 -30.33 16 13 C 0.11 3.45 6.44 86.31 0.56 4.01 16 14 C -0.12 -3.76 6.08 30.67 0.19 -3.57 16 15 C -0.10 -4.21 5.11 30.62 0.16 -4.05 16 16 C 0.04 2.12 2.25 -11.46 -0.03 2.09 16 17 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 18 C -0.53 -30.51 8.57 25.60 0.22 -30.29 16 19 H 0.06 3.45 7.74 -2.91 -0.02 3.43 16 20 C 0.01 0.43 5.30 84.66 0.45 0.88 16 21 N -0.92 -57.86 11.39 21.45 0.24 -57.62 16 22 Si 0.96 45.83 29.54 68.60 2.03 47.86 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 24 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 25 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 26 C 0.14 7.63 5.38 86.36 0.46 8.10 16 27 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 29 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 30 H 0.19 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.18 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.16 -0.51 8.14 -2.39 -0.02 -0.53 16 33 H 0.13 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.16 -0.34 8.14 -2.39 -0.02 -0.36 16 35 H 0.41 9.73 5.68 -92.71 -0.53 9.21 16 36 H 0.10 2.40 5.59 -2.39 -0.01 2.39 16 37 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 40 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 43 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.07 4.80 5.14 -2.39 -0.01 4.79 16 Total: -1.00 -97.87 362.54 -0.57 -98.44 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.47 Total: 15.45 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 5.87 Total: 5.29 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -4.12 Total: -112.73 kcal Atomic # 8 Polarization: -88.35 SS G_CDS: -4.52 Total: -92.87 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 16 Polarization: 38.86 SS G_CDS: -0.30 Total: 38.56 kcal Total: -97.87 -0.57 -98.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595551288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.875 kcal (2) G-P(sol) polarization free energy of solvation -97.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds