Wall clock time and date at job start Fri Apr 10 2020 18:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47316 * 2 1 4 4 C 1.53008 * 109.46620 * 240.00384 * 2 1 3 5 5 N 1.46501 * 109.46745 * 179.97438 * 4 2 1 6 6 C 1.34779 * 119.99796 * 180.27597 * 5 4 2 7 7 O 1.21586 * 120.00202 * 354.78945 * 6 5 4 8 8 N 1.34775 * 119.99663 * 174.79018 * 6 5 4 9 9 C 1.46918 * 120.63657 * 4.93844 * 8 6 5 10 10 C 1.53617 * 108.54834 * 126.36594 * 9 8 6 11 11 C 1.53039 * 109.24327 * 54.85488 * 10 9 8 12 12 C 1.53035 * 109.54076 * 298.51557 * 11 10 9 13 13 H 1.09007 * 109.49490 * 301.41468 * 12 11 10 14 14 C 1.50699 * 109.52546 * 181.33159 * 12 11 10 15 15 H 1.07997 * 119.99964 * 0.14415 * 14 12 11 16 16 C 1.37876 * 119.99909 * 180.14616 * 14 12 11 17 17 N 1.31519 * 120.00011 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 120.00085 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46882 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47109 * 119.99880 * 18 16 14 21 21 H 1.48495 * 109.47021 * 239.99577 * 18 16 14 22 22 C 1.46933 * 120.62967 * 185.21118 * 8 6 5 23 23 S 1.81397 * 109.47492 * 120.00482 * 2 1 3 24 24 C 1.81397 * 101.92100 * 305.00164 * 23 2 1 25 25 O 1.42104 * 108.57955 * 59.48333 * 23 2 1 26 26 O 1.42094 * 108.58090 * 190.50841 * 23 2 1 27 27 H 1.09005 * 109.46936 * 299.99528 * 1 2 3 28 28 H 1.08999 * 109.47352 * 59.99444 * 1 2 3 29 29 H 1.09001 * 109.47316 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47118 * 60.00029 * 4 2 1 31 31 H 1.09000 * 109.47401 * 299.99527 * 4 2 1 32 32 H 0.97004 * 120.00176 * 359.97438 * 5 4 2 33 33 H 1.09003 * 109.58717 * 246.20331 * 9 8 6 34 34 H 1.09007 * 109.58382 * 6.61854 * 9 8 6 35 35 H 1.09008 * 109.63558 * 294.86203 * 10 9 8 36 36 H 1.09003 * 109.46206 * 174.74729 * 10 9 8 37 37 H 1.09000 * 109.46161 * 178.49287 * 11 10 9 38 38 H 1.09003 * 109.44531 * 58.53001 * 11 10 9 39 39 H 0.96996 * 120.00014 * 180.02562 * 17 16 14 40 40 H 1.09009 * 109.58462 * 353.37779 * 22 8 6 41 41 H 1.08995 * 109.58710 * 113.65383 * 22 8 6 42 42 H 1.09002 * 109.47530 * 59.99538 * 24 23 2 43 43 H 1.08999 * 109.47350 * 180.02562 * 24 23 2 44 44 H 1.09000 * 109.46747 * 299.99579 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 7 3.5049 -0.7207 -1.2497 6 6 4.1787 -1.2993 -2.2635 7 8 3.5746 -1.9036 -3.1284 8 7 5.5223 -1.2080 -2.3184 9 6 6.2749 -0.5753 -1.2267 10 6 7.3563 -1.5552 -0.7468 11 6 8.2167 -1.9803 -1.9390 12 6 7.3428 -2.6958 -2.9716 13 1 6.8715 -3.5639 -2.5104 14 6 8.1962 -3.1431 -4.1303 15 1 9.2569 -2.9399 -4.1298 16 6 7.6229 -3.8117 -5.1911 17 7 6.3313 -4.0596 -5.1914 18 14 8.6806 -4.3655 -6.6277 19 1 10.0909 -3.9684 -6.3860 20 1 8.5987 -5.8422 -6.7624 21 1 8.1929 -3.7269 -7.8765 22 6 6.2617 -1.7339 -3.4741 23 16 2.1348 -0.8552 1.4810 24 6 1.2999 0.0574 2.8079 25 8 1.6409 -2.1876 1.4678 26 8 3.5342 -0.6352 1.5912 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.6765 -0.2073 -2.1393 31 1 1.6766 -1.7489 -1.2494 32 1 3.9900 -0.3001 -0.5225 33 1 6.7423 0.3407 -1.5881 34 1 5.5990 -0.3430 -0.4037 35 1 6.8850 -2.4340 -0.3066 36 1 7.9837 -1.0670 -0.0010 37 1 9.0019 -2.6549 -1.5979 38 1 8.6678 -1.0984 -2.3937 39 1 5.9280 -4.5303 -5.9375 40 1 5.5771 -2.2663 -4.1344 41 1 6.7259 -0.9103 -4.0164 42 1 0.2203 -0.0212 2.6794 43 1 1.5830 -0.3638 3.7725 44 1 1.5950 1.1059 2.7690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595570576.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:24 Heat of formation + Delta-G solvation = -127.689096 kcal Electronic energy + Delta-G solvation = -26150.054514 eV Core-core repulsion = 22421.782725 eV Total energy + Delta-G solvation = -3728.271789 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.37955 -38.69422 -38.08186 -37.23246 -36.86870 -35.36464 -34.01453 -33.16866 -31.48704 -30.30888 -27.72135 -26.89807 -25.54405 -23.72722 -23.40196 -21.77668 -20.49671 -19.78487 -19.09688 -18.27456 -18.16964 -17.53476 -17.06954 -16.73106 -16.59862 -16.36625 -15.65217 -15.26955 -15.21587 -15.01872 -14.46620 -14.40399 -14.21897 -14.02444 -13.95184 -13.75191 -13.57071 -13.45092 -13.15066 -13.08810 -13.04525 -12.89954 -12.65179 -12.37069 -12.28261 -12.20427 -11.93673 -11.87235 -11.64356 -11.28814 -11.21321 -10.96982 -10.84091 -10.52318 -10.32561 -9.31926 -8.08450 -6.26796 -1.00714 1.40990 1.41766 1.54871 1.66592 1.78840 2.13622 2.43017 2.65098 2.87823 3.12011 3.20202 3.35755 3.71245 4.01995 4.07335 4.12492 4.13099 4.24652 4.27863 4.45810 4.58025 4.59157 4.70678 4.73321 4.78698 4.82701 4.84733 5.00241 5.08686 5.21923 5.25011 5.27674 5.29899 5.37185 5.56787 5.61959 5.86432 5.95847 6.10159 6.35461 6.86453 7.00711 7.43129 7.57403 8.95145 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024359 B = 0.003423 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.191919 B = 8177.582026 C = 8795.003248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.568 4.568 3 H 0.183 0.817 4 C 0.140 3.860 5 N -0.756 5.756 6 C 0.692 3.308 7 O -0.633 6.633 8 N -0.626 5.626 9 C 0.104 3.896 10 C -0.128 4.128 11 C -0.102 4.102 12 C 0.035 3.965 13 H -0.020 1.020 14 C -0.534 4.534 15 H 0.065 0.935 16 C 0.006 3.994 17 N -0.916 5.916 18 Si 0.962 3.038 19 H -0.259 1.259 20 H -0.284 1.284 21 H -0.281 1.281 22 C 0.142 3.858 23 S 2.390 3.610 24 C -0.628 4.628 25 O -0.987 6.987 26 O -0.977 6.977 27 H 0.118 0.882 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.411 0.589 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.041 0.959 36 H 0.105 0.895 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.259 0.741 40 H 0.077 0.923 41 H 0.042 0.958 42 H 0.160 0.840 43 H 0.139 0.861 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.405 17.076 18.598 28.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.678 4.678 3 H 0.200 0.800 4 C 0.015 3.985 5 N -0.420 5.420 6 C 0.393 3.607 7 O -0.515 6.515 8 N -0.362 5.362 9 C -0.018 4.018 10 C -0.166 4.166 11 C -0.140 4.140 12 C 0.015 3.985 13 H -0.001 1.001 14 C -0.572 4.572 15 H 0.083 0.917 16 C -0.193 4.193 17 N -0.555 5.555 18 Si 0.787 3.213 19 H -0.182 1.182 20 H -0.210 1.210 21 H -0.207 1.207 22 C 0.019 3.981 23 S 2.577 3.423 24 C -0.781 4.781 25 O -0.984 6.984 26 O -0.974 6.974 27 H 0.136 0.864 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.253 0.747 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.060 0.940 36 H 0.124 0.876 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.095 0.905 41 H 0.060 0.940 42 H 0.178 0.822 43 H 0.158 0.842 44 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -12.355 15.843 17.924 26.924 hybrid contribution 0.167 -0.270 -0.987 1.036 sum -12.189 15.573 16.938 26.038 Atomic orbital electron populations 1.21861 0.86618 1.04875 1.07326 1.30252 1.09353 1.14673 1.13503 0.79956 1.21089 0.78212 1.00738 0.98430 1.45578 1.07399 1.63137 1.25894 1.16184 0.82469 0.79679 0.82321 1.90885 1.68659 1.48821 1.43097 1.47729 1.03756 1.61626 1.23092 1.22015 0.94614 0.96296 0.88851 1.21990 0.97509 0.98886 0.98221 1.21496 0.97524 0.99720 0.95242 1.18949 0.92867 0.92502 0.94140 1.00144 1.21532 0.94875 1.36613 1.04195 0.91689 1.25968 0.96040 0.95846 1.01419 1.70137 1.11793 1.41398 1.32172 0.85442 0.79343 0.77625 0.78843 1.18247 1.21028 1.20695 1.21641 0.94747 0.95382 0.86334 1.08561 0.76239 0.77211 0.80271 1.30077 1.15865 1.16229 1.15972 1.93554 1.82278 1.35826 1.86736 1.93503 1.30702 1.87007 1.86176 0.86397 0.88754 0.91299 0.89053 0.92340 0.74674 0.89227 0.88837 0.94034 0.87645 0.92888 0.91784 0.93191 0.90489 0.93994 0.82159 0.84213 0.81637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.90 71.98 0.64 -0.35 16 2 C -0.57 -7.08 2.91 30.60 0.09 -6.99 16 3 H 0.18 0.80 8.14 -2.39 -0.02 0.78 16 4 C 0.14 3.65 5.11 86.38 0.44 4.09 16 5 N -0.76 -25.04 5.13 -478.52 -2.46 -27.49 16 6 C 0.69 31.73 8.29 179.05 1.49 33.22 16 7 O -0.63 -35.51 15.77 -3.99 -0.06 -35.57 16 8 N -0.63 -28.01 2.97 -836.07 -2.48 -30.49 16 9 C 0.10 3.48 6.42 86.51 0.56 4.03 16 10 C -0.13 -4.40 6.10 30.81 0.19 -4.21 16 11 C -0.10 -4.25 5.11 30.62 0.16 -4.09 16 12 C 0.03 1.88 2.25 -11.47 -0.03 1.85 16 13 H -0.02 -1.23 8.14 -2.38 -0.02 -1.25 16 14 C -0.53 -30.59 8.57 25.60 0.22 -30.37 16 15 H 0.06 3.55 7.74 -2.91 -0.02 3.53 16 16 C 0.01 0.37 5.30 84.65 0.45 0.82 16 17 N -0.92 -58.23 11.39 21.45 0.24 -57.99 16 18 Si 0.96 45.70 29.54 68.60 2.03 47.73 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 20 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 22 C 0.14 7.55 5.41 86.36 0.47 8.02 16 23 S 2.39 39.70 4.69 -56.49 -0.27 39.43 16 24 C -0.63 -1.87 10.01 113.37 1.14 -0.73 16 25 O -0.99 -27.15 18.06 -127.37 -2.30 -29.45 16 26 O -0.98 -22.97 16.07 -127.37 -2.05 -25.02 16 27 H 0.12 -0.25 6.39 -2.38 -0.02 -0.26 16 28 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.41 11.49 3.89 -92.71 -0.36 11.13 16 33 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 34 H 0.09 2.66 5.64 -2.38 -0.01 2.65 16 35 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 40 H 0.08 4.88 5.11 -2.38 -0.01 4.87 16 41 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.16 -0.36 6.77 -2.39 -0.02 -0.37 16 43 H 0.14 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.17 -0.55 8.14 -2.39 -0.02 -0.57 16 Total: -1.00 -93.97 357.16 -0.90 -94.88 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.64 Total: 18.68 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 5.80 Total: 5.29 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -4.69 Total: -115.97 kcal Atomic # 8 Polarization: -85.63 SS G_CDS: -4.41 Total: -90.04 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Atomic # 16 Polarization: 39.70 SS G_CDS: -0.27 Total: 39.43 kcal Total: -93.97 -0.90 -94.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595570576.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.813 kcal (2) G-P(sol) polarization free energy of solvation -93.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds