Wall clock time and date at job start Fri Apr 10 2020 18:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46979 * 2 1 4 4 C 1.42898 * 114.00039 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47583 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47113 * 64.99687 * 5 4 3 7 7 C 1.48555 * 111.00280 * 290.13002 * 6 5 4 8 8 C 1.54383 * 104.59982 * 200.95673 * 7 6 5 9 9 H 1.09003 * 110.32489 * 142.74559 * 8 7 6 10 10 O 1.42900 * 110.41197 * 264.91379 * 8 7 6 11 11 C 1.54260 * 105.05506 * 23.85428 * 8 7 6 12 12 H 1.09002 * 110.32147 * 241.00426 * 11 8 7 13 13 N 1.46499 * 110.32595 * 118.89630 * 11 8 7 14 14 C 1.34778 * 120.00278 * 154.99492 * 13 11 8 15 15 O 1.21278 * 119.99748 * 0.02562 * 14 13 11 16 16 C 1.50697 * 120.00209 * 180.02562 * 14 13 11 17 17 S 1.80999 * 109.47181 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99825 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00405 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99855 * 179.72221 * 18 17 16 21 21 N 1.31634 * 119.99756 * 0.27728 * 20 18 17 22 22 Si 1.86803 * 120.00005 * 180.27923 * 20 18 17 23 23 H 1.48498 * 109.47174 * 90.00123 * 22 20 18 24 24 H 1.48501 * 109.47062 * 210.00074 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99873 * 22 20 18 26 26 C 1.48564 * 111.00199 * 174.71150 * 6 5 4 27 27 H 1.08993 * 109.46734 * 299.99679 * 1 2 3 28 28 H 1.09001 * 109.47248 * 59.99797 * 1 2 3 29 29 H 1.08996 * 109.47058 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46884 * 240.00491 * 2 1 3 31 31 H 1.08993 * 109.46933 * 120.00353 * 2 1 3 32 32 H 1.09005 * 109.47051 * 60.00267 * 4 3 2 33 33 H 1.09004 * 109.47327 * 300.00422 * 4 3 2 34 34 H 1.09001 * 109.46980 * 305.00495 * 5 4 3 35 35 H 1.08997 * 109.47413 * 184.99961 * 5 4 3 36 36 H 1.09006 * 110.41511 * 82.17718 * 7 6 5 37 37 H 1.09006 * 110.41392 * 319.73768 * 7 6 5 38 38 H 0.96696 * 113.99952 * 295.68694 * 10 8 7 39 39 H 0.97000 * 119.99972 * 334.99848 * 13 11 8 40 40 H 1.08999 * 109.47278 * 59.99800 * 16 14 13 41 41 H 1.09002 * 109.46837 * 300.00183 * 16 14 13 42 42 H 0.97000 * 119.99219 * 179.97438 * 21 20 18 43 43 H 1.08993 * 110.41151 * 40.26222 * 26 6 5 44 44 H 1.08998 * 110.40708 * 277.81952 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8254 2.9384 0.0001 6 7 3.3867 3.5617 1.2559 7 6 1.9063 3.6748 1.3054 8 6 1.6351 4.7797 2.3490 9 1 0.7856 5.3900 2.0422 10 8 1.3926 4.2030 3.6338 11 6 2.9225 5.6290 2.3772 12 1 3.3696 5.6059 3.3710 13 7 2.6302 7.0095 1.9835 14 6 3.4285 8.0124 2.3999 15 8 4.3891 7.7720 3.1001 16 6 3.1274 9.4325 1.9955 17 16 4.3713 10.5388 2.7061 18 6 3.7926 12.0852 2.0908 19 1 2.9083 12.1234 1.4720 20 6 4.4698 13.2550 2.4064 21 7 5.5474 13.2084 3.1610 22 14 3.8519 14.8952 1.7605 23 1 2.8943 15.4810 2.7325 24 1 4.9998 15.8195 1.5781 25 1 3.1706 14.6890 0.4572 26 6 3.8632 4.9658 1.3483 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8333 0.9768 -0.8909 33 1 3.8341 0.9765 0.8891 34 1 3.3492 3.4420 -0.8411 35 1 4.9082 3.0255 -0.0899 36 1 1.4634 2.7319 1.6263 37 1 1.5146 3.9676 0.3312 38 1 0.5953 3.6576 3.6760 39 1 1.8621 7.2017 1.4233 40 1 2.1397 9.7129 2.3614 41 1 3.1486 9.5130 0.9086 42 1 6.0208 14.0259 3.3812 43 1 3.7779 5.4607 0.3809 44 1 4.8940 4.9949 1.7015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191156287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:37 Heat of formation + Delta-G solvation = -123.869347 kcal Electronic energy + Delta-G solvation = -24449.586776 eV Core-core repulsion = 20721.480624 eV Total energy + Delta-G solvation = -3728.106152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.18578 -38.79730 -38.03387 -36.03445 -34.35087 -32.42247 -32.24951 -30.73705 -29.34522 -28.21820 -27.00890 -25.45474 -23.26561 -23.01838 -21.37619 -20.96961 -20.41353 -17.90177 -17.38623 -17.21970 -17.01840 -16.32618 -16.03613 -15.50890 -15.15446 -14.90276 -14.79325 -14.66025 -14.20148 -14.09587 -13.84410 -13.21202 -13.10536 -13.05043 -12.82854 -12.60966 -12.54340 -12.25841 -12.02206 -11.76244 -11.63552 -11.57613 -11.21785 -11.05905 -11.02059 -10.86054 -10.75566 -10.24229 -9.90380 -9.80961 -9.41659 -9.07028 -8.98844 -8.70024 -8.22861 -6.49202 -6.20989 -3.91493 2.93903 3.06857 3.22794 3.26535 3.29799 3.30772 3.57413 3.82323 4.06811 4.20864 4.41260 4.51420 4.61866 4.67774 4.80013 4.88368 4.93803 4.98651 5.05071 5.14008 5.15306 5.16568 5.19122 5.33489 5.38804 5.42548 5.47379 5.54131 5.61407 5.68506 5.74907 5.86125 5.89613 6.03352 6.13508 6.40257 6.70257 6.71895 6.83004 7.48098 7.60053 7.66778 8.35766 8.59909 9.24224 10.86394 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030974 B = 0.002170 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.773137 B =12901.136191 C =12968.204153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.387 6.387 4 C 0.067 3.933 5 C 0.045 3.955 6 N -0.501 5.501 7 C 0.016 3.984 8 C 0.092 3.908 9 H 0.067 0.933 10 O -0.550 6.550 11 C 0.149 3.851 12 H 0.113 0.887 13 N -0.733 5.733 14 C 0.534 3.466 15 O -0.511 6.511 16 C -0.153 4.153 17 S -0.058 6.058 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.024 3.976 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.045 0.955 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.377 0.623 39 H 0.397 0.603 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.268 0.732 43 H 0.052 0.948 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.065 -26.483 -8.540 29.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.307 6.307 4 C -0.010 4.010 5 C -0.084 4.084 6 N -0.225 5.225 7 C -0.112 4.112 8 C 0.031 3.969 9 H 0.084 0.916 10 O -0.355 6.355 11 C 0.043 3.957 12 H 0.131 0.869 13 N -0.388 5.388 14 C 0.321 3.679 15 O -0.385 6.385 16 C -0.304 4.304 17 S 0.168 5.832 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.208 1.208 25 H -0.197 1.197 26 C -0.105 4.105 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.116 0.884 37 H 0.070 0.930 38 H 0.224 0.776 39 H 0.231 0.769 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.647 -26.638 -6.701 28.797 hybrid contribution -2.505 1.332 -2.467 3.760 sum -11.153 -25.305 -9.168 29.134 Atomic orbital electron populations 1.21739 0.93808 1.02211 1.03049 1.22430 0.95510 0.84074 0.99977 1.87923 1.21263 1.26128 1.95356 1.22509 0.81360 0.96601 1.00487 1.22337 1.01048 0.93678 0.91313 1.65418 1.07950 1.16200 1.32973 1.23855 0.89505 0.99829 0.98049 1.22800 0.96736 0.93395 0.83933 0.91555 1.86589 1.49109 1.69277 1.30553 1.21405 0.93441 0.80346 1.00489 0.86946 1.46055 1.31760 1.05830 1.55136 1.20336 0.82123 0.86383 0.79107 1.90713 1.27696 1.84179 1.35864 1.23532 1.06820 0.95035 1.04988 1.85420 1.32608 0.98264 1.66896 1.22868 1.15776 0.92398 1.37365 0.90938 1.25000 0.94671 0.99086 0.94872 1.70022 1.16850 1.28758 1.34597 0.86164 0.78390 0.81784 0.79128 1.20270 1.20755 1.19724 1.23572 1.00706 0.87793 0.98459 0.91835 0.91983 0.91221 0.93682 0.93368 0.92985 0.92207 0.93680 0.88993 0.88354 0.93004 0.77553 0.76906 0.89167 0.89215 0.92180 0.92989 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 10.28 37.16 0.38 -0.38 16 2 C 0.06 0.35 6.66 37.16 0.25 0.59 16 3 O -0.39 -3.19 7.58 -35.23 -0.27 -3.46 16 4 C 0.07 0.51 6.24 37.16 0.23 0.74 16 5 C 0.04 0.39 5.38 -3.83 -0.02 0.37 16 6 N -0.50 -5.36 5.37 -229.97 -1.24 -6.59 16 7 C 0.02 0.15 4.85 -2.18 -0.01 0.14 16 8 C 0.09 0.95 4.18 -25.35 -0.11 0.84 16 9 H 0.07 0.58 7.67 -51.93 -0.40 0.18 16 10 O -0.55 -6.07 13.27 -35.23 -0.47 -6.53 16 11 C 0.15 1.99 3.22 -66.55 -0.21 1.78 16 12 H 0.11 1.88 7.40 -51.93 -0.38 1.50 16 13 N -0.73 -10.11 5.06 -52.47 -0.27 -10.38 16 14 C 0.53 10.09 7.85 -10.99 -0.09 10.00 16 15 O -0.51 -11.77 15.51 5.56 0.09 -11.69 16 16 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 17 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 18 C -0.54 -15.31 9.50 30.94 0.29 -15.02 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 22 Si 0.92 21.47 29.55 -169.99 -5.02 16.45 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C 0.02 0.29 6.20 -2.18 -0.01 0.28 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.04 0.40 7.88 -51.93 -0.41 -0.01 16 35 H 0.09 0.72 8.13 -51.93 -0.42 0.30 16 36 H 0.10 0.92 6.74 -51.93 -0.35 0.57 16 37 H 0.05 0.48 7.82 -51.93 -0.41 0.07 16 38 H 0.38 2.35 9.12 45.56 0.42 2.76 16 39 H 0.40 4.21 8.36 -40.82 -0.34 3.87 16 40 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 41 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.05 0.61 7.91 -51.93 -0.41 0.20 16 44 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 LS Contribution 376.03 15.07 5.67 5.67 Total: -1.00 -35.74 376.03 -8.63 -44.38 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.48 Total: 3.01 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 0.83 Total: -1.53 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: -0.77 Total: -42.49 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.65 Total: -21.68 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.74 -8.63 -44.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191156287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.493 kcal (2) G-P(sol) polarization free energy of solvation -35.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds