Wall clock time and date at job start Fri Apr 10 2020 18:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42903 * 109.46979 * 2 1 4 4 C 1.42898 * 114.00039 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47583 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.47113 * 64.99687 * 5 4 3 7 7 C 1.48555 * 111.00280 * 290.13002 * 6 5 4 8 8 C 1.54383 * 104.59982 * 200.95673 * 7 6 5 9 9 H 1.09003 * 110.32489 * 142.74559 * 8 7 6 10 10 O 1.42900 * 110.41197 * 264.91379 * 8 7 6 11 11 C 1.54260 * 105.05506 * 23.85428 * 8 7 6 12 12 H 1.09002 * 110.32147 * 241.00426 * 11 8 7 13 13 N 1.46499 * 110.32595 * 118.89630 * 11 8 7 14 14 C 1.34778 * 120.00278 * 154.99492 * 13 11 8 15 15 O 1.21278 * 119.99748 * 0.02562 * 14 13 11 16 16 C 1.50697 * 120.00209 * 180.02562 * 14 13 11 17 17 S 1.80999 * 109.47181 * 180.02562 * 16 14 13 18 18 C 1.76199 * 99.99825 * 179.97438 * 17 16 14 19 19 H 1.08002 * 120.00405 * 0.02562 * 18 17 16 20 20 C 1.38803 * 119.99855 * 179.72221 * 18 17 16 21 21 N 1.31634 * 119.99756 * 0.27728 * 20 18 17 22 22 Si 1.86803 * 120.00005 * 180.27923 * 20 18 17 23 23 H 1.48498 * 109.47174 * 90.00123 * 22 20 18 24 24 H 1.48501 * 109.47062 * 210.00074 * 22 20 18 25 25 H 1.48504 * 109.46913 * 329.99873 * 22 20 18 26 26 C 1.48564 * 111.00199 * 174.71150 * 6 5 4 27 27 H 1.08993 * 109.46734 * 299.99679 * 1 2 3 28 28 H 1.09001 * 109.47248 * 59.99797 * 1 2 3 29 29 H 1.08996 * 109.47058 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46884 * 240.00491 * 2 1 3 31 31 H 1.08993 * 109.46933 * 120.00353 * 2 1 3 32 32 H 1.09005 * 109.47051 * 60.00267 * 4 3 2 33 33 H 1.09004 * 109.47327 * 300.00422 * 4 3 2 34 34 H 1.09001 * 109.46980 * 305.00495 * 5 4 3 35 35 H 1.08997 * 109.47413 * 184.99961 * 5 4 3 36 36 H 1.09006 * 110.41511 * 82.17718 * 7 6 5 37 37 H 1.09006 * 110.41392 * 319.73768 * 7 6 5 38 38 H 0.96696 * 113.99952 * 295.68694 * 10 8 7 39 39 H 0.97000 * 119.99972 * 334.99848 * 13 11 8 40 40 H 1.08999 * 109.47278 * 59.99800 * 16 14 13 41 41 H 1.09002 * 109.46837 * 300.00183 * 16 14 13 42 42 H 0.97000 * 119.99219 * 179.97438 * 21 20 18 43 43 H 1.08993 * 110.41151 * 40.26222 * 26 6 5 44 44 H 1.08998 * 110.40708 * 277.81952 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 6 3.8254 2.9384 0.0001 6 7 3.3867 3.5617 1.2559 7 6 1.9063 3.6748 1.3054 8 6 1.6351 4.7797 2.3490 9 1 0.7856 5.3900 2.0422 10 8 1.3926 4.2030 3.6338 11 6 2.9225 5.6290 2.3772 12 1 3.3696 5.6059 3.3710 13 7 2.6302 7.0095 1.9835 14 6 3.4285 8.0124 2.3999 15 8 4.3891 7.7720 3.1001 16 6 3.1274 9.4325 1.9955 17 16 4.3713 10.5388 2.7061 18 6 3.7926 12.0852 2.0908 19 1 2.9083 12.1234 1.4720 20 6 4.4698 13.2550 2.4064 21 7 5.5474 13.2084 3.1610 22 14 3.8519 14.8952 1.7605 23 1 2.8943 15.4810 2.7325 24 1 4.9998 15.8195 1.5781 25 1 3.1706 14.6890 0.4572 26 6 3.8632 4.9658 1.3483 27 1 -0.3632 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.8333 0.9768 -0.8909 33 1 3.8341 0.9765 0.8891 34 1 3.3492 3.4420 -0.8411 35 1 4.9082 3.0255 -0.0899 36 1 1.4634 2.7319 1.6263 37 1 1.5146 3.9676 0.3312 38 1 0.5953 3.6576 3.6760 39 1 1.8621 7.2017 1.4233 40 1 2.1397 9.7129 2.3614 41 1 3.1486 9.5130 0.9086 42 1 6.0208 14.0259 3.3812 43 1 3.7779 5.4607 0.3809 44 1 4.8940 4.9949 1.7015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191156287.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:36 Heat of formation + Delta-G solvation = -154.308480 kcal Electronic energy + Delta-G solvation = -24450.906716 eV Core-core repulsion = 20721.480624 eV Total energy + Delta-G solvation = -3729.426092 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.27883 -39.92367 -38.78566 -36.83880 -35.58610 -34.58040 -32.97758 -31.66175 -30.51802 -29.10263 -28.07838 -27.56306 -23.89541 -23.59862 -22.33988 -21.96342 -21.66628 -19.86550 -18.43812 -17.94012 -17.80663 -17.52137 -16.99057 -16.87507 -16.52256 -16.30261 -16.14747 -15.54206 -15.43146 -15.01782 -14.85424 -14.65987 -14.40981 -13.87396 -13.74557 -13.66707 -13.44327 -13.19160 -13.16113 -13.04446 -12.88773 -12.61474 -12.50594 -12.32177 -12.12909 -11.85406 -11.82556 -11.71145 -11.14076 -11.13088 -10.89307 -10.46493 -10.27428 -10.25664 -9.52185 -8.66833 -8.34332 -6.12586 1.25040 1.42886 1.45844 1.55941 1.56617 2.10213 2.27526 2.77948 2.97401 2.99766 3.19287 3.31457 3.51980 3.67957 3.94210 3.97091 4.13886 4.18609 4.21175 4.26240 4.29530 4.39016 4.46341 4.49928 4.51785 4.55108 4.61748 4.66821 4.76665 4.84739 4.90242 4.94576 5.08556 5.10402 5.31002 5.31591 5.42240 5.75173 5.95892 6.20161 6.30496 6.42679 6.89834 7.06831 7.19306 8.74855 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.030974 B = 0.002170 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.773137 B =12901.136191 C =12968.204153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.401 6.401 4 C 0.070 3.930 5 C 0.043 3.957 6 N -0.513 5.513 7 C 0.027 3.973 8 C 0.100 3.900 9 H 0.092 0.908 10 O -0.573 6.573 11 C 0.145 3.855 12 H 0.074 0.926 13 N -0.705 5.705 14 C 0.537 3.463 15 O -0.561 6.561 16 C -0.128 4.128 17 S -0.152 6.152 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 1.000 3.000 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.257 1.257 26 C 0.030 3.970 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.048 0.952 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.398 0.602 39 H 0.417 0.583 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.271 0.729 43 H 0.059 0.941 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.635 -27.146 -10.545 32.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.322 6.322 4 C -0.006 4.006 5 C -0.085 4.085 6 N -0.238 5.238 7 C -0.101 4.101 8 C 0.040 3.960 9 H 0.110 0.890 10 O -0.381 6.381 11 C 0.038 3.962 12 H 0.092 0.908 13 N -0.360 5.360 14 C 0.323 3.677 15 O -0.438 6.438 16 C -0.279 4.279 17 S 0.075 5.925 18 C -0.693 4.693 19 H 0.102 0.898 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.181 1.181 26 C -0.099 4.099 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.080 0.920 38 H 0.249 0.751 39 H 0.255 0.745 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.284 -27.354 -8.738 30.853 hybrid contribution -1.757 1.360 -1.839 2.884 sum -13.041 -25.994 -10.577 30.945 Atomic orbital electron populations 1.21743 0.93060 1.03097 1.02668 1.22575 0.96140 0.83264 1.00474 1.87887 1.21378 1.27419 1.95468 1.22474 0.81396 0.95713 1.01059 1.22415 1.01425 0.94315 0.90348 1.65407 1.08910 1.14944 1.34494 1.23803 0.88603 0.99654 0.98065 1.22748 0.95733 0.93459 0.84094 0.89044 1.86541 1.50763 1.69929 1.30910 1.21434 0.95595 0.80204 0.98918 0.90808 1.45719 1.31129 1.05202 1.53964 1.20133 0.82042 0.86749 0.78759 1.90707 1.30042 1.84732 1.38339 1.23359 1.04832 0.93967 1.05737 1.85633 1.37028 1.01038 1.68771 1.23207 1.16102 0.92608 1.37417 0.89783 1.26155 0.94677 1.03567 0.94904 1.70193 1.18446 1.29989 1.36153 0.84936 0.77907 0.76023 0.78997 1.19348 1.20354 1.18098 1.23380 0.99327 0.89034 0.98148 0.92156 0.92353 0.89762 0.92841 0.93210 0.91249 0.92780 0.93401 0.88597 0.87894 0.92021 0.75085 0.74473 0.87037 0.86863 0.92015 0.92247 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 10.28 71.98 0.74 -0.47 16 2 C 0.05 0.53 6.66 71.98 0.48 1.01 16 3 O -0.40 -5.79 7.58 -148.98 -1.13 -6.92 16 4 C 0.07 0.94 6.24 71.98 0.45 1.39 16 5 C 0.04 0.68 5.38 86.30 0.46 1.15 16 6 N -0.51 -10.40 5.37 -881.50 -4.73 -15.13 16 7 C 0.03 0.45 4.85 86.45 0.42 0.87 16 8 C 0.10 1.86 4.18 31.49 0.13 1.99 16 9 H 0.09 1.27 7.67 -2.39 -0.02 1.25 16 10 O -0.57 -11.76 13.27 -148.98 -1.98 -13.74 16 11 C 0.14 3.79 3.22 45.89 0.15 3.94 16 12 H 0.07 2.57 7.40 -2.39 -0.02 2.55 16 13 N -0.70 -18.47 5.06 -438.30 -2.22 -20.69 16 14 C 0.54 20.19 7.85 87.66 0.69 20.87 16 15 O -0.56 -26.78 15.51 -3.02 -0.05 -26.83 16 16 C -0.13 -5.04 6.16 71.23 0.44 -4.61 16 17 S -0.15 -8.49 20.57 -56.49 -1.16 -9.65 16 18 C -0.55 -31.17 9.50 67.96 0.65 -30.52 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 20 C 0.01 0.67 5.49 84.86 0.47 1.13 16 21 N -0.91 -56.32 13.22 21.65 0.29 -56.04 16 22 Si 1.00 43.64 29.55 68.60 2.03 45.67 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 26 C 0.03 0.73 6.20 86.45 0.54 1.27 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.69 8.14 -2.38 -0.02 0.68 16 33 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.74 7.88 -2.39 -0.02 0.72 16 35 H 0.10 1.42 8.13 -2.39 -0.02 1.40 16 36 H 0.10 1.68 6.74 -2.38 -0.02 1.66 16 37 H 0.06 0.94 7.82 -2.38 -0.02 0.92 16 38 H 0.40 4.09 9.12 -74.06 -0.68 3.42 16 39 H 0.42 7.59 8.36 -92.71 -0.77 6.81 16 40 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 41 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 42 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.06 1.33 7.91 -2.39 -0.02 1.31 16 44 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -80.14 376.03 -3.79 -83.93 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -0.44 Total: 21.36 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 5.61 Total: -1.97 kcal Atomic # 7 Polarization: -85.18 SS G_CDS: -6.67 Total: -91.85 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -3.15 Total: -47.49 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: -8.49 SS G_CDS: -1.16 Total: -9.65 kcal Total: -80.14 -3.79 -83.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191156287.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.375 kcal (2) G-P(sol) polarization free energy of solvation -80.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds