Wall clock time and date at job start Fri Apr 10 2020 18:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36944 * 120.00358 * 2 1 4 4 H 1.07995 * 120.00435 * 201.71745 * 3 2 1 5 5 C 1.38817 * 119.99558 * 21.71752 * 3 2 1 6 6 N 1.31622 * 119.99984 * 13.66656 * 5 3 2 7 7 Si 1.86798 * 119.99819 * 193.66878 * 5 3 2 8 8 H 1.48498 * 109.47111 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.46873 * 120.00006 * 7 5 3 10 10 H 1.48496 * 109.46812 * 239.99976 * 7 5 3 11 11 C 1.46503 * 120.00042 * 179.97438 * 2 1 3 12 12 H 1.08995 * 110.63924 * 176.85684 * 11 2 1 13 13 C 1.55156 * 110.86933 * 53.61028 * 11 2 1 14 14 C 1.55129 * 101.48692 * 205.89700 * 13 11 2 15 15 N 1.47428 * 104.71897 * 37.29959 * 14 13 11 16 16 C 1.34771 * 125.64808 * 155.81832 * 15 14 13 17 17 O 1.21284 * 120.00220 * 179.68767 * 16 15 14 18 18 C 1.50706 * 120.00232 * 359.68981 * 16 15 14 19 19 C 1.52996 * 109.46952 * 179.97438 * 18 16 15 20 20 C 1.53009 * 109.46860 * 179.97438 * 19 18 16 21 21 S 1.81394 * 109.46943 * 179.97438 * 20 19 18 22 22 C 1.81408 * 101.91946 * 180.02562 * 21 20 19 23 23 O 1.42096 * 108.58261 * 294.49164 * 21 20 19 24 24 O 1.42108 * 108.57858 * 65.51995 * 21 20 19 25 25 C 1.47028 * 108.70115 * 335.54913 * 15 14 13 26 26 H 1.08998 * 109.47530 * 274.46111 * 1 2 3 27 27 H 1.09004 * 109.47055 * 34.45721 * 1 2 3 28 28 H 1.08999 * 109.47282 * 154.45268 * 1 2 3 29 29 H 0.96998 * 119.99696 * 179.97438 * 6 5 3 30 30 H 1.08997 * 111.01081 * 324.14372 * 13 11 2 31 31 H 1.09011 * 111.00457 * 87.95470 * 13 11 2 32 32 H 1.08996 * 110.50043 * 278.45693 * 14 13 11 33 33 H 1.09000 * 110.34128 * 156.05824 * 14 13 11 34 34 H 1.08996 * 109.47071 * 59.99831 * 18 16 15 35 35 H 1.08993 * 109.46494 * 300.00272 * 18 16 15 36 36 H 1.09005 * 109.47228 * 60.00125 * 19 18 16 37 37 H 1.08991 * 109.47304 * 299.99694 * 19 18 16 38 38 H 1.09005 * 109.46773 * 60.00243 * 20 19 18 39 39 H 1.08993 * 109.46863 * 300.00505 * 20 19 18 40 40 H 1.09002 * 109.46933 * 60.00290 * 22 21 20 41 41 H 1.08996 * 109.47140 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.47229 * 300.00256 * 22 21 20 43 43 H 1.09000 * 109.87899 * 120.70897 * 25 15 14 44 44 H 1.08992 * 109.88111 * 241.71537 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1722 1.2191 -0.3461 5 6 1.5296 2.3454 0.4449 6 7 0.3967 2.2718 1.1109 7 14 2.3028 4.0102 0.0982 8 1 3.5649 3.8212 -0.6612 9 1 1.3624 4.8359 -0.7011 10 1 2.5961 4.6966 1.3819 11 6 2.1975 -1.2688 0.0006 12 1 3.2716 -1.0923 -0.0554 13 6 1.7290 -2.1780 -1.1661 14 6 2.0620 -3.5881 -0.6117 15 7 1.7542 -3.5070 0.8277 16 6 1.4460 -4.5490 1.6250 17 8 1.2152 -4.3651 2.8014 18 6 1.3881 -5.9428 1.0548 19 6 1.0202 -6.9320 2.1624 20 6 0.9608 -8.3471 1.5833 21 16 0.5254 -9.5200 2.8967 22 6 0.5138 -11.0977 2.0013 23 8 1.5809 -9.5474 3.8476 24 8 -0.7966 -9.2382 3.3354 25 6 1.8454 -2.1019 1.2509 26 1 -0.3634 0.0799 1.0245 27 1 -0.3633 0.8474 -0.5815 28 1 -0.3634 -0.9272 -0.4432 29 1 -0.0365 3.0820 1.4220 30 1 0.6592 -2.0667 -1.3430 31 1 2.2964 -1.9724 -2.0739 32 1 3.1169 -3.8178 -0.7617 33 1 1.4369 -4.3412 -1.0915 34 1 2.3613 -6.2067 0.6409 35 1 0.6356 -5.9821 0.2672 36 1 0.0471 -6.6683 2.5767 37 1 1.7730 -6.8925 2.9496 38 1 1.9338 -8.6111 1.1688 39 1 0.2079 -8.3862 0.7962 40 1 1.5000 -11.2804 1.5744 41 1 0.2603 -11.9041 2.6893 42 1 -0.2262 -11.0564 1.2020 43 1 0.8886 -1.7743 1.6573 44 1 2.6252 -1.9916 2.0043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192817941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:46 Heat of formation + Delta-G solvation = -78.701864 kcal Electronic energy + Delta-G solvation = -24693.643475 eV Core-core repulsion = 20967.495932 eV Total energy + Delta-G solvation = -3726.147543 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.84152 -37.59850 -37.30184 -36.35183 -34.88236 -34.77408 -31.71605 -30.18708 -29.81887 -29.01601 -27.43547 -26.06231 -23.86599 -22.43942 -22.12258 -19.38164 -19.22972 -18.91805 -17.21007 -17.09898 -16.77527 -16.71928 -16.16186 -16.02857 -15.44916 -14.96478 -14.67010 -14.02075 -13.85308 -13.66813 -13.47958 -13.39341 -13.01708 -12.82595 -12.67618 -12.42625 -12.37220 -12.29972 -12.16275 -12.03693 -11.84569 -11.54146 -11.40298 -11.20142 -10.95585 -10.87621 -10.81625 -10.58849 -10.47330 -10.28664 -9.90976 -9.84714 -9.60615 -8.60211 -8.32150 -6.85661 -5.78462 -3.25227 -0.42244 2.36195 2.81609 3.11347 3.33702 3.35933 3.42460 3.44427 3.60044 4.16274 4.23407 4.32085 4.44189 4.56906 4.62604 4.80880 4.93166 4.97483 5.11959 5.17336 5.22486 5.27123 5.35004 5.47404 5.57587 5.66613 5.77111 5.84507 5.86156 5.96639 6.30391 6.33705 6.50934 6.64929 6.80528 6.84121 7.31933 7.68912 7.76256 7.80058 8.31292 8.38066 9.16026 9.78634 10.26930 11.26199 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037883 B = 0.002173 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.934984 B =12884.875457 C =13122.804065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.261 4.261 4 H 0.072 0.928 5 C 0.003 3.997 6 N -0.903 5.903 7 Si 0.907 3.093 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.078 0.922 13 C -0.154 4.154 14 C 0.101 3.899 15 N -0.614 5.614 16 C 0.518 3.482 17 O -0.544 6.544 18 C -0.127 4.127 19 C -0.098 4.098 20 C -0.611 4.611 21 S 2.421 3.579 22 C -0.658 4.658 23 O -0.937 6.937 24 O -0.937 6.937 25 C 0.085 3.915 26 H 0.030 0.970 27 H 0.045 0.955 28 H 0.002 0.998 29 H 0.253 0.747 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.128 0.872 43 H 0.073 0.927 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.823 -25.708 -6.116 26.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.306 5.306 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.196 4.196 6 N -0.548 5.548 7 Si 0.737 3.263 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.194 4.194 14 C -0.022 4.022 15 N -0.348 5.348 16 C 0.306 3.694 17 O -0.422 6.422 18 C -0.168 4.168 19 C -0.137 4.137 20 C -0.740 4.740 21 S 2.603 3.397 22 C -0.807 4.807 23 O -0.935 6.935 24 O -0.934 6.934 25 C -0.039 4.039 26 H 0.049 0.951 27 H 0.064 0.936 28 H 0.020 0.980 29 H 0.064 0.936 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.146 0.854 43 H 0.091 0.909 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.382 -25.341 -4.474 25.770 hybrid contribution 0.495 0.692 -1.102 1.392 sum 1.877 -24.649 -5.576 25.341 Atomic orbital electron populations 1.20811 0.82391 0.95717 0.99543 1.43950 1.01939 0.99925 1.84828 1.19266 0.97861 0.84933 1.37011 0.91069 1.25055 0.97811 0.98662 0.98037 1.70096 1.18811 1.27119 1.38730 0.86149 0.78515 0.84072 0.77561 1.20266 1.21575 1.21681 1.21346 0.96381 0.85979 0.90094 0.90395 1.23382 1.02822 0.93251 0.99925 1.22370 0.99968 0.99129 0.80779 1.48607 1.68065 1.08034 1.10078 1.20235 0.77161 0.85874 0.86090 1.90726 1.49813 1.85457 1.16167 1.21576 1.04117 0.91864 0.99280 1.21074 1.05223 0.89035 0.98383 1.30363 1.12419 1.12504 1.18669 1.07870 0.75612 0.78377 0.77888 1.30303 1.11422 1.23285 1.15730 1.93614 1.57428 1.85911 1.56499 1.93620 1.37454 1.83367 1.78928 1.22951 1.02391 0.78603 0.99980 0.95131 0.93592 0.97969 0.93624 0.90340 0.90412 0.91580 0.91372 0.88725 0.88679 0.89209 0.89252 0.84853 0.84817 0.85384 0.85302 0.85368 0.90911 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.84 7.82 59.84 0.47 4.31 16 2 N -0.59 -14.11 2.93 -171.39 -0.50 -14.61 16 3 C -0.26 -6.95 9.63 -15.05 -0.14 -7.09 16 4 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 5 C 0.00 0.09 5.08 -17.43 -0.09 0.00 16 6 N -0.90 -26.11 10.68 55.49 0.59 -25.52 16 7 Si 0.91 21.48 29.58 -169.99 -5.03 16.45 16 8 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 9 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 C 0.17 3.32 3.43 -66.10 -0.23 3.09 16 12 H 0.08 1.47 7.92 -51.93 -0.41 1.06 16 13 C -0.15 -2.28 6.61 -24.46 -0.16 -2.45 16 14 C 0.10 1.20 6.70 -2.41 -0.02 1.19 16 15 N -0.61 -9.61 3.32 -170.38 -0.57 -10.17 16 16 C 0.52 8.07 7.85 -10.98 -0.09 7.98 16 17 O -0.54 -10.88 16.31 5.55 0.09 -10.79 16 18 C -0.13 -1.24 4.70 -27.88 -0.13 -1.37 16 19 C -0.10 -0.96 4.51 -26.73 -0.12 -1.08 16 20 C -0.61 -3.00 5.81 37.16 0.22 -2.78 16 21 S 2.42 16.29 5.36 -107.50 -0.58 15.71 16 22 C -0.66 -1.70 10.62 101.05 1.07 -0.62 16 23 O -0.94 -10.34 18.10 -57.83 -1.05 -11.38 16 24 O -0.94 -10.46 18.10 -57.83 -1.05 -11.51 16 25 C 0.09 1.65 6.51 -3.06 -0.02 1.63 16 26 H 0.03 0.81 7.33 -51.93 -0.38 0.43 16 27 H 0.05 1.19 7.23 -51.93 -0.38 0.81 16 28 H 0.00 0.04 6.04 -51.93 -0.31 -0.27 16 29 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 30 H 0.08 1.25 6.07 -51.93 -0.32 0.94 16 31 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.63 7.48 -51.93 -0.39 0.24 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.72 7.85 -51.93 -0.41 0.31 16 36 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 37 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 38 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 39 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.13 0.09 8.14 -51.92 -0.42 -0.33 16 41 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.13 0.10 8.14 -51.92 -0.42 -0.32 16 43 H 0.07 1.64 7.11 -51.93 -0.37 1.27 16 44 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 367.59 15.07 5.54 5.54 Total: -1.00 -38.55 367.59 -8.94 -47.48 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -7.15 Total: -4.00 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: 0.76 Total: 2.81 kcal Atomic # 7 Polarization: -49.83 SS G_CDS: -0.48 Total: -50.31 kcal Atomic # 8 Polarization: -31.68 SS G_CDS: -2.00 Total: -33.68 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Atomic # 16 Polarization: 16.29 SS G_CDS: -0.58 Total: 15.71 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.55 -8.94 -47.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192817941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.221 kcal (2) G-P(sol) polarization free energy of solvation -38.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds