Wall clock time and date at job start Fri Apr 10 2020 18:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36944 * 120.00358 * 2 1 4 4 H 1.07995 * 120.00435 * 201.71745 * 3 2 1 5 5 C 1.38817 * 119.99558 * 21.71752 * 3 2 1 6 6 N 1.31622 * 119.99984 * 13.66656 * 5 3 2 7 7 Si 1.86798 * 119.99819 * 193.66878 * 5 3 2 8 8 H 1.48498 * 109.47111 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.46873 * 120.00006 * 7 5 3 10 10 H 1.48496 * 109.46812 * 239.99976 * 7 5 3 11 11 C 1.46503 * 120.00042 * 179.97438 * 2 1 3 12 12 H 1.08995 * 110.63924 * 176.85684 * 11 2 1 13 13 C 1.55156 * 110.86933 * 53.61028 * 11 2 1 14 14 C 1.55129 * 101.48692 * 205.89700 * 13 11 2 15 15 N 1.47428 * 104.71897 * 37.29959 * 14 13 11 16 16 C 1.34771 * 125.64808 * 155.81832 * 15 14 13 17 17 O 1.21284 * 120.00220 * 179.68767 * 16 15 14 18 18 C 1.50706 * 120.00232 * 359.68981 * 16 15 14 19 19 C 1.52996 * 109.46952 * 179.97438 * 18 16 15 20 20 C 1.53009 * 109.46860 * 179.97438 * 19 18 16 21 21 S 1.81394 * 109.46943 * 179.97438 * 20 19 18 22 22 C 1.81408 * 101.91946 * 180.02562 * 21 20 19 23 23 O 1.42096 * 108.58261 * 294.49164 * 21 20 19 24 24 O 1.42108 * 108.57858 * 65.51995 * 21 20 19 25 25 C 1.47028 * 108.70115 * 335.54913 * 15 14 13 26 26 H 1.08998 * 109.47530 * 274.46111 * 1 2 3 27 27 H 1.09004 * 109.47055 * 34.45721 * 1 2 3 28 28 H 1.08999 * 109.47282 * 154.45268 * 1 2 3 29 29 H 0.96998 * 119.99696 * 179.97438 * 6 5 3 30 30 H 1.08997 * 111.01081 * 324.14372 * 13 11 2 31 31 H 1.09011 * 111.00457 * 87.95470 * 13 11 2 32 32 H 1.08996 * 110.50043 * 278.45693 * 14 13 11 33 33 H 1.09000 * 110.34128 * 156.05824 * 14 13 11 34 34 H 1.08996 * 109.47071 * 59.99831 * 18 16 15 35 35 H 1.08993 * 109.46494 * 300.00272 * 18 16 15 36 36 H 1.09005 * 109.47228 * 60.00125 * 19 18 16 37 37 H 1.08991 * 109.47304 * 299.99694 * 19 18 16 38 38 H 1.09005 * 109.46773 * 60.00243 * 20 19 18 39 39 H 1.08993 * 109.46863 * 300.00505 * 20 19 18 40 40 H 1.09002 * 109.46933 * 60.00290 * 22 21 20 41 41 H 1.08996 * 109.47140 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.47229 * 300.00256 * 22 21 20 43 43 H 1.09000 * 109.87899 * 120.70897 * 25 15 14 44 44 H 1.08992 * 109.88111 * 241.71537 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1722 1.2191 -0.3461 5 6 1.5296 2.3454 0.4449 6 7 0.3967 2.2718 1.1109 7 14 2.3028 4.0102 0.0982 8 1 3.5649 3.8212 -0.6612 9 1 1.3624 4.8359 -0.7011 10 1 2.5961 4.6966 1.3819 11 6 2.1975 -1.2688 0.0006 12 1 3.2716 -1.0923 -0.0554 13 6 1.7290 -2.1780 -1.1661 14 6 2.0620 -3.5881 -0.6117 15 7 1.7542 -3.5070 0.8277 16 6 1.4460 -4.5490 1.6250 17 8 1.2152 -4.3651 2.8014 18 6 1.3881 -5.9428 1.0548 19 6 1.0202 -6.9320 2.1624 20 6 0.9608 -8.3471 1.5833 21 16 0.5254 -9.5200 2.8967 22 6 0.5138 -11.0977 2.0013 23 8 1.5809 -9.5474 3.8476 24 8 -0.7966 -9.2382 3.3354 25 6 1.8454 -2.1019 1.2509 26 1 -0.3634 0.0799 1.0245 27 1 -0.3633 0.8474 -0.5815 28 1 -0.3634 -0.9272 -0.4432 29 1 -0.0365 3.0820 1.4220 30 1 0.6592 -2.0667 -1.3430 31 1 2.2964 -1.9724 -2.0739 32 1 3.1169 -3.8178 -0.7617 33 1 1.4369 -4.3412 -1.0915 34 1 2.3613 -6.2067 0.6409 35 1 0.6356 -5.9821 0.2672 36 1 0.0471 -6.6683 2.5767 37 1 1.7730 -6.8925 2.9496 38 1 1.9338 -8.6111 1.1688 39 1 0.2079 -8.3862 0.7962 40 1 1.5000 -11.2804 1.5744 41 1 0.2603 -11.9041 2.6893 42 1 -0.2262 -11.0564 1.2020 43 1 0.8886 -1.7743 1.6573 44 1 2.6252 -1.9916 2.0043 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192817941.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:45 Heat of formation + Delta-G solvation = -109.672237 kcal Electronic energy + Delta-G solvation = -24694.986452 eV Core-core repulsion = 20967.495932 eV Total energy + Delta-G solvation = -3727.490519 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.10419 -39.01693 -37.94667 -36.99241 -36.55363 -35.59802 -33.48843 -31.34611 -30.47408 -29.99191 -28.59982 -28.06669 -25.30415 -23.92740 -22.96699 -20.87977 -20.20612 -19.69867 -18.96918 -18.20093 -17.62808 -17.42916 -17.17009 -16.82497 -16.69907 -16.33772 -15.86811 -15.38992 -15.08762 -14.79209 -14.46986 -14.11530 -14.04960 -13.84170 -13.70049 -13.51739 -13.37675 -13.15842 -13.12595 -13.00824 -12.95923 -12.85246 -12.78247 -12.51487 -12.40519 -12.19296 -12.07053 -11.91120 -11.88681 -11.79629 -11.41682 -11.34557 -10.86434 -10.66144 -9.63591 -8.84989 -7.85500 -5.34603 -0.86819 1.46433 1.47352 1.58236 1.63942 1.97122 2.00227 2.50265 2.82304 3.18291 3.27127 3.44619 3.58758 3.84057 3.87981 3.90070 3.93395 4.17127 4.24969 4.27643 4.29618 4.38531 4.47475 4.48783 4.60115 4.71511 4.76218 4.80976 4.91371 4.95182 5.04248 5.06884 5.14406 5.19796 5.26594 5.33150 5.45340 5.62966 5.68528 6.29146 6.61667 7.10435 7.17671 7.82373 8.26442 9.18049 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037883 B = 0.002173 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.934984 B =12884.875457 C =13122.804065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.603 5.603 3 C -0.263 4.263 4 H 0.081 0.919 5 C -0.059 4.059 6 N -0.942 5.942 7 Si 0.973 3.027 8 H -0.260 1.260 9 H -0.291 1.291 10 H -0.298 1.298 11 C 0.164 3.836 12 H 0.082 0.918 13 C -0.141 4.141 14 C 0.105 3.895 15 N -0.615 5.615 16 C 0.506 3.494 17 O -0.605 6.605 18 C -0.114 4.114 19 C -0.112 4.112 20 C -0.589 4.589 21 S 2.402 3.598 22 C -0.629 4.629 23 O -0.997 6.997 24 O -0.998 6.998 25 C 0.095 3.905 26 H -0.009 1.009 27 H 0.020 0.980 28 H 0.035 0.965 29 H 0.247 0.753 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.176 0.824 39 H 0.174 0.826 40 H 0.159 0.841 41 H 0.131 0.869 42 H 0.158 0.842 43 H 0.029 0.971 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.516 -28.945 -10.510 30.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.324 5.324 3 C -0.393 4.393 4 H 0.098 0.902 5 C -0.253 4.253 6 N -0.589 5.589 7 Si 0.801 3.199 8 H -0.184 1.184 9 H -0.218 1.218 10 H -0.225 1.225 11 C 0.055 3.945 12 H 0.100 0.900 13 C -0.181 4.181 14 C -0.016 4.016 15 N -0.348 5.348 16 C 0.297 3.703 17 O -0.487 6.487 18 C -0.154 4.154 19 C -0.151 4.151 20 C -0.720 4.720 21 S 2.592 3.408 22 C -0.782 4.782 23 O -0.994 6.994 24 O -0.996 6.996 25 C -0.031 4.031 26 H 0.009 0.991 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.120 0.880 32 H 0.116 0.884 33 H 0.132 0.868 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.193 0.807 39 H 0.191 0.809 40 H 0.177 0.823 41 H 0.150 0.850 42 H 0.176 0.824 43 H 0.047 0.953 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.106 -28.609 -8.878 30.115 hybrid contribution 0.010 1.594 0.238 1.612 sum 3.116 -27.015 -8.640 28.533 Atomic orbital electron populations 1.20454 0.82967 0.96136 0.96943 1.44163 1.01966 1.01218 1.85072 1.19685 0.98173 0.86009 1.35442 0.90151 1.25888 0.98610 1.02247 0.98583 1.70286 1.20547 1.27397 1.40622 0.85112 0.78190 0.79661 0.76917 1.18377 1.21802 1.22508 1.21597 0.96271 0.84739 0.91889 0.89968 1.23264 1.02313 0.93746 0.98756 1.22675 1.02915 0.98200 0.77809 1.48716 1.67946 1.06135 1.12028 1.21527 0.75414 0.87967 0.85426 1.90706 1.52236 1.86556 1.19165 1.21687 1.07526 0.86798 0.99390 1.21083 1.02972 0.92503 0.98517 1.30169 1.16129 1.07826 1.17830 1.07865 0.73523 0.80562 0.78818 1.30030 1.14373 1.18226 1.15588 1.93541 1.58375 1.87358 1.60171 1.93546 1.39717 1.85139 1.81167 1.22477 0.99183 0.81870 0.99572 0.99087 0.96087 0.94718 0.94362 0.91443 0.87969 0.88413 0.86794 0.84583 0.84985 0.92106 0.91792 0.80655 0.80851 0.82308 0.85043 0.82405 0.95295 0.94488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.98 7.82 127.77 1.00 9.98 16 2 N -0.60 -29.50 2.93 -696.16 -2.04 -31.54 16 3 C -0.26 -14.13 9.63 84.03 0.81 -13.32 16 4 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 5 C -0.06 -3.28 5.08 84.86 0.43 -2.85 16 6 N -0.94 -56.98 10.68 21.65 0.23 -56.75 16 7 Si 0.97 44.97 29.58 68.60 2.03 47.00 16 8 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 9 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 10 H -0.30 -14.01 7.11 99.48 0.71 -13.31 16 11 C 0.16 6.18 3.43 46.18 0.16 6.33 16 12 H 0.08 3.01 7.92 -2.39 -0.02 2.99 16 13 C -0.14 -3.70 6.61 32.06 0.21 -3.49 16 14 C 0.11 1.96 6.70 86.93 0.58 2.54 16 15 N -0.61 -18.17 3.32 -811.35 -2.70 -20.87 16 16 C 0.51 15.22 7.85 87.66 0.69 15.90 16 17 O -0.60 -25.49 16.31 -3.04 -0.05 -25.54 16 18 C -0.11 -1.73 4.70 29.85 0.14 -1.59 16 19 C -0.11 -2.02 4.51 30.60 0.14 -1.88 16 20 C -0.59 -3.36 5.81 71.99 0.42 -2.94 16 21 S 2.40 30.03 5.36 -56.49 -0.30 29.73 16 22 C -0.63 -0.52 10.62 113.37 1.20 0.68 16 23 O -1.00 -22.85 18.10 -127.37 -2.30 -25.15 16 24 O -1.00 -23.32 18.10 -127.37 -2.31 -25.63 16 25 C 0.10 3.79 6.51 86.73 0.56 4.36 16 26 H -0.01 -0.53 7.33 -2.39 -0.02 -0.55 16 27 H 0.02 1.11 7.23 -2.38 -0.02 1.09 16 28 H 0.03 1.46 6.04 -2.39 -0.01 1.45 16 29 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 30 H 0.07 1.94 6.07 -2.39 -0.01 1.92 16 31 H 0.10 2.23 8.14 -2.38 -0.02 2.22 16 32 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.11 1.22 7.48 -2.39 -0.02 1.20 16 34 H 0.14 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.13 1.12 7.85 -2.39 -0.02 1.10 16 36 H 0.06 1.42 8.10 -2.38 -0.02 1.40 16 37 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 38 H 0.18 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.17 -0.31 8.14 -2.39 -0.02 -0.33 16 40 H 0.16 -0.72 8.14 -2.39 -0.02 -0.74 16 41 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.16 -0.68 8.14 -2.39 -0.02 -0.70 16 43 H 0.03 1.39 7.11 -2.39 -0.02 1.37 16 44 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -95.97 367.59 -0.12 -96.09 By element: Atomic # 1 Polarization: -2.05 SS G_CDS: 0.98 Total: -1.07 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: 6.35 Total: 13.72 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -4.51 Total: -109.15 kcal Atomic # 8 Polarization: -71.66 SS G_CDS: -4.66 Total: -76.32 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Atomic # 16 Polarization: 30.03 SS G_CDS: -0.30 Total: 29.73 kcal Total: -95.97 -0.12 -96.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192817941.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.579 kcal (2) G-P(sol) polarization free energy of solvation -95.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds