Wall clock time and date at job start Fri Apr 10 2020 18:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46500 * 109.46727 * 2 1 4 4 C 1.46499 * 120.00061 * 269.99748 * 3 2 1 5 5 C 1.53001 * 109.47073 * 263.53958 * 4 3 2 6 6 C 1.34778 * 120.00244 * 90.00181 * 3 2 1 7 7 O 1.21285 * 119.99850 * 5.13710 * 6 3 2 8 8 C 1.50694 * 120.00390 * 185.13844 * 6 3 2 9 9 H 1.08999 * 109.52322 * 314.31509 * 8 6 3 10 10 C 1.53043 * 109.49889 * 74.39472 * 8 6 3 11 11 C 1.53032 * 109.54115 * 181.31856 * 10 8 6 12 12 C 1.53622 * 109.24117 * 298.51087 * 11 10 8 13 13 N 1.46923 * 108.54487 * 54.85679 * 12 11 10 14 14 S 1.65600 * 120.63439 * 126.36761 * 13 12 11 15 15 O 1.42100 * 106.40335 * 156.18080 * 14 13 12 16 16 O 1.42107 * 106.39940 * 23.26001 * 14 13 12 17 17 C 1.76200 * 107.21811 * 269.72275 * 14 13 12 18 18 H 1.08001 * 120.00184 * 359.97438 * 17 14 13 19 19 C 1.37878 * 120.00026 * 179.72090 * 17 14 13 20 20 N 1.31513 * 120.00069 * 0.27860 * 19 17 14 21 21 Si 1.86806 * 120.00010 * 180.27231 * 19 17 14 22 22 H 1.48503 * 109.47009 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46740 * 120.00485 * 21 19 17 24 24 H 1.48499 * 109.46966 * 240.00369 * 21 19 17 25 25 C 1.46926 * 118.73839 * 306.09569 * 13 12 11 26 26 H 1.09001 * 109.46702 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47144 * 300.00081 * 1 2 3 28 28 H 1.09000 * 109.46910 * 59.99837 * 1 2 3 29 29 H 1.09000 * 109.47144 * 239.99919 * 2 1 3 30 30 H 1.09006 * 109.46777 * 119.99718 * 2 1 3 31 31 H 1.09000 * 109.47085 * 23.53871 * 4 3 2 32 32 H 1.08998 * 109.47552 * 143.53870 * 4 3 2 33 33 H 1.09000 * 109.47095 * 299.99907 * 5 4 3 34 34 H 1.09003 * 109.47081 * 60.00061 * 5 4 3 35 35 H 1.09003 * 109.47070 * 179.97438 * 5 4 3 36 36 H 1.09002 * 109.46095 * 301.34322 * 10 8 6 37 37 H 1.09000 * 109.45690 * 61.31016 * 10 8 6 38 38 H 1.09000 * 109.49827 * 58.58940 * 11 10 8 39 39 H 1.08995 * 109.50082 * 178.65004 * 11 10 8 40 40 H 1.09001 * 109.74058 * 295.11804 * 12 11 10 41 41 H 1.09008 * 109.66525 * 174.54704 * 12 11 10 42 42 H 0.96995 * 120.00253 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.59115 * 173.64619 * 25 13 12 44 44 H 1.09004 * 109.58710 * 293.92854 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.7458 1.9671 -1.6292 6 6 2.2430 2.0166 1.1672 7 8 2.1308 1.4170 2.2154 8 6 2.6335 3.4721 1.1698 9 1 3.4064 3.6433 0.4206 10 6 1.4085 4.3303 0.8453 11 6 1.8111 5.8064 0.8154 12 6 2.3351 6.2164 2.2001 13 7 3.4217 5.3026 2.5779 14 16 4.9017 5.8925 3.0296 15 8 5.5051 4.8888 3.8345 16 8 4.6831 7.2225 3.4797 17 6 5.8815 6.0158 1.5704 18 1 5.4681 5.7247 0.6161 19 6 7.1744 6.4889 1.6461 20 7 7.6781 6.8429 2.8082 21 14 8.2107 6.6268 0.0979 22 1 7.4175 6.1688 -1.0710 23 1 8.6153 8.0415 -0.1024 24 1 9.4228 5.7801 0.2366 25 6 3.1685 3.8555 2.5531 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8901 31 1 1.6642 1.6106 -2.0545 32 1 1.9858 3.1215 -1.1702 33 1 4.3441 2.4283 -0.8434 34 1 4.0225 0.9174 -1.7277 35 1 3.9274 2.4806 -2.5734 36 1 1.0110 4.0424 -0.1280 37 1 0.6456 4.1775 1.6087 38 1 2.5917 5.9556 0.0694 39 1 0.9435 6.4150 0.5607 40 1 1.5306 6.1501 2.9326 41 1 2.7136 7.2379 2.1614 42 1 8.5877 7.1754 2.8615 43 1 4.0971 3.3186 2.7474 44 1 2.4325 3.6002 3.3155 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192933177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:58 Heat of formation + Delta-G solvation = -134.895037 kcal Electronic energy + Delta-G solvation = -26764.438526 eV Core-core repulsion = 23035.854264 eV Total energy + Delta-G solvation = -3728.584262 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.37610 -37.55112 -36.20027 -35.26997 -33.93586 -33.14238 -32.78056 -31.65894 -30.76269 -29.38670 -26.12551 -24.68956 -24.18396 -23.53925 -22.39155 -20.42035 -18.87096 -18.49881 -17.62173 -16.86891 -16.39144 -16.22881 -15.29529 -15.08168 -14.86963 -14.55638 -14.17213 -14.05125 -13.85678 -13.70955 -13.35625 -13.19489 -12.98055 -12.80174 -12.54358 -12.30464 -12.19614 -12.02875 -11.87089 -11.47850 -11.31165 -11.24841 -11.19184 -11.09284 -10.82747 -10.73992 -10.63807 -10.59747 -10.26849 -10.05854 -9.95558 -9.53577 -9.25950 -8.88403 -8.76003 -8.18446 -6.69170 -5.31377 2.26245 2.70112 2.94142 3.04100 3.12543 3.18173 4.04183 4.37589 4.63838 4.65862 4.74067 4.90537 4.94949 4.96080 4.97102 5.17491 5.21457 5.25196 5.27695 5.38750 5.48764 5.59429 5.63984 5.69025 5.76345 5.79680 5.82565 5.90110 5.97409 5.99043 6.07321 6.11254 6.19684 6.22779 6.34041 6.46634 6.51757 6.57236 6.84296 7.32548 7.33484 7.59308 7.97402 8.23914 8.89172 10.24468 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015692 B = 0.004838 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.907727 B = 5786.176760 C = 6535.680793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.109 3.891 3 N -0.617 5.617 4 C 0.100 3.900 5 C -0.178 4.178 6 C 0.526 3.474 7 O -0.535 6.535 8 C -0.127 4.127 9 H 0.103 0.897 10 C -0.103 4.103 11 C -0.133 4.133 12 C 0.124 3.876 13 N -1.012 6.012 14 S 2.713 3.287 15 O -1.002 7.002 16 O -1.003 7.003 17 C -1.018 5.018 18 H 0.102 0.898 19 C 0.133 3.867 20 N -0.845 5.845 21 Si 0.919 3.081 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.271 1.271 25 C 0.148 3.852 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.093 0.907 42 H 0.290 0.710 43 H 0.093 0.907 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.063 -8.581 -11.923 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.013 4.013 3 N -0.351 5.351 4 C -0.023 4.023 5 C -0.236 4.236 6 C 0.314 3.686 7 O -0.411 6.411 8 C -0.149 4.149 9 H 0.121 0.879 10 C -0.141 4.141 11 C -0.172 4.172 12 C -0.003 4.003 13 N -0.846 5.846 14 S 2.814 3.186 15 O -0.993 6.993 16 O -0.994 6.994 17 C -1.152 5.152 18 H 0.120 0.880 19 C -0.085 4.085 20 N -0.475 5.475 21 Si 0.743 3.257 22 H -0.186 1.186 23 H -0.196 1.196 24 H -0.196 1.196 25 C 0.021 3.979 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.112 0.888 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -12.756 -8.612 -10.309 18.524 hybrid contribution 0.714 -0.049 -1.667 1.814 sum -12.042 -8.661 -11.976 19.064 Atomic orbital electron populations 1.22130 0.96084 1.01985 1.02223 1.21389 0.94130 0.82728 1.03088 1.48053 1.66726 1.14121 1.06217 1.21719 0.96813 0.98519 0.85281 1.22288 0.96304 1.02509 1.02510 1.20714 0.75757 0.89083 0.83014 1.90683 1.51189 1.68023 1.31191 1.21827 1.00246 0.90727 1.02149 0.87865 1.21473 0.95965 0.95203 1.01469 1.22003 1.01308 0.95055 0.98825 1.21322 0.90315 0.94059 0.94563 1.58248 1.29596 1.11585 1.85157 1.00596 0.70184 0.72243 0.75576 1.93363 1.74760 1.61171 1.69964 1.93352 1.85076 1.38393 1.82553 1.30642 1.11072 1.57931 1.15532 0.88001 1.24748 0.96632 0.89333 0.97766 1.69905 1.17587 1.35152 1.24838 0.86166 0.79441 0.78645 0.81490 1.18647 1.19621 1.19643 1.20936 1.02325 0.80966 0.93680 0.91797 0.92256 0.92731 0.90867 0.89795 0.90387 0.89632 0.91511 0.92368 0.91285 0.91597 0.91413 0.90823 0.90978 0.92330 0.88888 0.89947 0.88847 0.91193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 10.24 37.16 0.38 -1.03 16 2 C 0.11 1.07 6.14 -4.04 -0.02 1.04 16 3 N -0.62 -7.00 2.49 -173.68 -0.43 -7.44 16 4 C 0.10 0.87 5.72 -4.04 -0.02 0.85 16 5 C -0.18 -1.68 10.03 37.16 0.37 -1.31 16 6 C 0.53 7.82 6.83 -10.99 -0.08 7.75 16 7 O -0.53 -9.76 15.44 5.55 0.09 -9.68 16 8 C -0.13 -1.88 1.84 -91.65 -0.17 -2.05 16 9 H 0.10 1.50 5.98 -51.93 -0.31 1.19 16 10 C -0.10 -1.25 4.86 -26.69 -0.13 -1.38 16 11 C -0.13 -1.70 6.10 -26.39 -0.16 -1.86 16 12 C 0.12 2.06 6.41 -3.49 -0.02 2.04 16 13 N -1.01 -20.71 3.28 -113.27 -0.37 -21.08 16 14 S 2.71 72.61 4.97 -107.50 -0.53 72.07 16 15 O -1.00 -29.88 16.73 -57.17 -0.96 -30.84 16 16 O -1.00 -29.23 16.72 -57.17 -0.96 -30.19 16 17 C -1.02 -27.53 9.75 30.60 0.30 -27.24 16 18 H 0.10 2.48 7.81 -52.49 -0.41 2.07 16 19 C 0.13 3.67 5.46 -17.82 -0.10 3.58 16 20 N -0.85 -24.83 13.19 55.43 0.73 -24.10 16 21 Si 0.92 20.22 29.54 -169.99 -5.02 15.20 16 22 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 25 C 0.15 2.78 5.16 -3.71 -0.02 2.76 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 30 H 0.08 0.97 7.36 -51.93 -0.38 0.59 16 31 H 0.08 0.51 8.02 -51.93 -0.42 0.09 16 32 H 0.09 0.72 4.75 -51.93 -0.25 0.48 16 33 H 0.07 0.78 6.80 -51.93 -0.35 0.43 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.64 6.00 -51.93 -0.31 0.32 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 1.65 7.12 -51.92 -0.37 1.28 16 42 H 0.29 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.09 1.96 7.13 -51.93 -0.37 1.59 16 44 H 0.07 1.29 7.77 -51.93 -0.40 0.88 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -36.17 360.63 -8.62 -44.79 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.93 Total: 2.67 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 0.33 Total: -16.85 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.07 Total: -52.62 kcal Atomic # 8 Polarization: -68.87 SS G_CDS: -1.83 Total: -70.70 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 72.61 SS G_CDS: -0.53 Total: 72.07 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -36.17 -8.62 -44.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.102 kcal (2) G-P(sol) polarization free energy of solvation -36.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds