Wall clock time and date at job start Fri Apr 10 2020 18:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46699 * 2 1 4 4 C 1.50700 * 109.46851 * 240.00278 * 2 1 3 5 5 O 1.21280 * 119.99581 * 264.99387 * 4 2 1 6 6 N 1.34779 * 120.00162 * 85.00044 * 4 2 1 7 7 C 1.46928 * 120.63121 * 359.71663 * 6 4 2 8 8 C 1.52756 * 109.00583 * 233.58511 * 7 6 4 9 9 C 1.53035 * 109.38426 * 305.58599 * 8 7 6 10 10 C 1.53005 * 109.44690 * 181.25467 * 9 8 7 11 11 N 1.46503 * 109.46918 * 64.94203 * 10 9 8 12 12 C 1.36935 * 119.99707 * 179.97438 * 11 10 9 13 13 H 1.08002 * 119.99907 * 359.97438 * 12 11 10 14 14 C 1.38813 * 120.00183 * 179.97438 * 12 11 10 15 15 N 1.31616 * 120.00330 * 179.97438 * 14 12 11 16 16 Si 1.86808 * 119.99670 * 0.02562 * 14 12 11 17 17 H 1.48497 * 109.47150 * 90.00013 * 16 14 12 18 18 H 1.48496 * 109.47075 * 210.00238 * 16 14 12 19 19 H 1.48499 * 109.47064 * 329.99689 * 16 14 12 20 20 C 1.53044 * 109.53669 * 61.24380 * 9 8 7 21 21 C 1.46929 * 120.62987 * 179.97438 * 6 4 2 22 22 S 1.81391 * 109.47208 * 120.00012 * 2 1 3 23 23 C 1.81398 * 101.92304 * 304.99992 * 22 2 1 24 24 O 1.42105 * 108.57942 * 59.48865 * 22 2 1 25 25 O 1.42097 * 108.57959 * 190.51393 * 22 2 1 26 26 H 1.08998 * 109.47410 * 300.00299 * 1 2 3 27 27 H 1.09007 * 109.47431 * 60.00130 * 1 2 3 28 28 H 1.08998 * 109.47222 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.58448 * 353.42117 * 7 6 4 30 30 H 1.09000 * 109.58584 * 113.84287 * 7 6 4 31 31 H 1.09003 * 109.56104 * 185.54846 * 8 7 6 32 32 H 1.09008 * 109.36090 * 65.50334 * 8 7 6 33 33 H 1.08994 * 109.46299 * 301.21891 * 9 8 7 34 34 H 1.09005 * 109.46863 * 184.93382 * 10 9 8 35 35 H 1.08991 * 109.47228 * 304.94067 * 10 9 8 36 36 H 0.96992 * 120.00127 * 359.97438 * 11 10 9 37 37 H 0.96996 * 119.99752 * 179.97438 * 15 14 12 38 38 H 1.09000 * 109.49618 * 178.68235 * 20 9 8 39 39 H 1.08997 * 109.52264 * 58.60347 * 20 9 8 40 40 H 1.08993 * 109.58348 * 246.15561 * 21 6 4 41 41 H 1.08999 * 109.58503 * 6.43913 * 21 6 4 42 42 H 1.08999 * 109.47426 * 179.97438 * 23 22 2 43 43 H 1.08998 * 109.47096 * 300.00087 * 23 22 2 44 44 H 1.09006 * 109.47169 * 59.99793 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.3208 -1.8871 -1.1760 6 7 2.1610 -0.0380 -2.3915 7 6 1.8098 1.3863 -2.4746 8 6 0.8176 1.5880 -3.6185 9 6 1.4042 1.0087 -4.9078 10 6 0.4250 1.2379 -6.0609 11 7 0.2886 2.6756 -6.3072 12 6 -0.5408 3.1244 -7.3001 13 1 -1.0939 2.4185 -7.9019 14 6 -0.6705 4.4866 -7.5332 15 7 -1.4672 4.9180 -8.4879 16 14 0.2868 5.7076 -6.4928 17 1 1.6015 5.9761 -7.1288 18 1 -0.4796 6.9750 -6.3861 19 1 0.4995 5.1421 -5.1362 20 6 1.6426 -0.4928 -4.7321 21 6 2.6499 -0.7167 -3.5994 22 16 2.1347 -0.8551 1.4810 23 6 1.2998 0.0577 2.8079 24 8 1.6409 -2.1875 1.4679 25 8 3.5342 -0.6349 1.5913 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.3545 1.7057 -1.5371 30 1 2.7079 1.9736 -2.6657 31 1 0.6263 2.6528 -3.7521 32 1 -0.1157 1.0772 -3.3816 33 1 2.3497 1.5029 -5.1307 34 1 0.8015 0.7494 -6.9597 35 1 -0.5473 0.8200 -5.8004 36 1 0.7856 3.3095 -5.7670 37 1 -1.5581 5.8700 -8.6505 38 1 2.0384 -0.9092 -5.6584 39 1 0.7017 -0.9846 -4.4851 40 1 3.6177 -0.3041 -3.8839 41 1 2.7511 -1.7841 -3.4031 42 1 1.5822 -0.3641 3.7725 43 1 1.5949 1.1062 2.7689 44 1 0.2202 -0.0209 2.6794 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205529467.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:32 Heat of formation + Delta-G solvation = -119.968374 kcal Electronic energy + Delta-G solvation = -25698.648118 eV Core-core repulsion = 21970.711124 eV Total energy + Delta-G solvation = -3727.936993 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.55377 -39.16288 -38.05634 -37.04682 -36.74433 -35.11155 -34.21541 -32.65930 -31.99945 -30.23050 -28.59694 -26.20333 -25.00192 -24.39478 -23.19872 -21.85081 -20.46338 -19.69371 -19.53106 -18.75336 -18.00759 -17.19459 -16.92883 -16.63769 -16.40840 -16.25695 -15.92765 -15.52673 -15.38286 -14.92336 -14.74576 -14.46463 -14.14304 -14.11204 -13.99034 -13.93938 -13.60509 -13.34650 -13.22949 -13.14963 -13.06725 -13.02527 -12.89404 -12.79566 -12.24431 -12.15523 -11.98193 -11.88313 -11.68820 -11.66631 -11.42679 -11.40131 -11.04344 -10.93735 -9.81582 -9.28822 -8.01596 -5.35861 -1.07348 1.27970 1.37971 1.44911 1.52105 1.73767 1.77942 2.50587 2.72477 3.01547 3.20894 3.29768 3.53805 3.65070 3.71187 3.82131 3.91524 4.01620 4.11804 4.12590 4.26727 4.32741 4.37564 4.51877 4.57227 4.61946 4.68111 4.75051 4.80117 4.88895 4.97120 4.99382 5.05294 5.11611 5.16038 5.22510 5.44324 5.49521 5.76419 6.15776 6.22019 6.82605 7.09498 7.84361 8.06048 9.20271 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023409 B = 0.002993 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.843734 B = 9351.522125 C = 9947.000258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.609 4.609 3 H 0.197 0.803 4 C 0.529 3.471 5 O -0.578 6.578 6 N -0.595 5.595 7 C 0.098 3.902 8 C -0.126 4.126 9 C -0.090 4.090 10 C 0.160 3.840 11 N -0.753 5.753 12 C -0.238 4.238 13 H 0.049 0.951 14 C -0.068 4.068 15 N -0.988 5.988 16 Si 0.960 3.040 17 H -0.280 1.280 18 H -0.297 1.297 19 H -0.238 1.238 20 C -0.116 4.116 21 C 0.109 3.891 22 S 2.425 3.575 23 C -0.627 4.627 24 O -0.970 6.970 25 O -0.984 6.984 26 H 0.130 0.870 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.019 0.981 35 H 0.018 0.982 36 H 0.369 0.631 37 H 0.258 0.742 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.145 0.855 43 H 0.167 0.833 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.764 -5.977 25.860 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.718 4.718 3 H 0.214 0.786 4 C 0.316 3.684 5 O -0.459 6.459 6 N -0.326 5.326 7 C -0.024 4.024 8 C -0.165 4.165 9 C -0.109 4.109 10 C 0.034 3.966 11 N -0.400 5.400 12 C -0.369 4.369 13 H 0.067 0.933 14 C -0.259 4.259 15 N -0.638 5.638 16 Si 0.786 3.214 17 H -0.207 1.207 18 H -0.224 1.224 19 H -0.162 1.162 20 C -0.155 4.155 21 C -0.013 4.013 22 S 2.610 3.390 23 C -0.781 4.781 24 O -0.967 6.967 25 O -0.981 6.981 26 H 0.149 0.851 27 H 0.108 0.892 28 H 0.085 0.915 29 H 0.139 0.861 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.203 0.797 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.164 0.836 43 H 0.185 0.815 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.376 -7.358 25.716 27.746 hybrid contribution -0.278 1.297 -0.641 1.474 sum 7.098 -6.061 25.075 26.755 Atomic orbital electron populations 1.21873 0.85541 1.05070 1.07894 1.30675 1.10507 1.16746 1.13868 0.78559 1.19912 0.77210 0.86166 0.85094 1.90848 1.52496 1.17124 1.85393 1.48130 1.63425 1.11988 1.09037 1.22113 0.99937 0.79292 1.01046 1.21849 0.98746 1.02064 0.93793 1.21276 0.98897 0.96258 0.94424 1.20781 0.96579 0.83592 0.95648 1.42645 1.53748 1.03335 1.40231 1.19020 1.17655 0.91653 1.08541 0.93271 1.25618 1.01121 0.98917 1.00277 1.69908 1.43622 1.14233 1.36071 0.85344 0.77842 0.78070 0.80125 1.20666 1.22425 1.16188 1.21809 0.99565 0.95392 0.98707 1.21731 0.97553 0.98692 0.83352 1.07674 0.75652 0.76711 0.79002 1.30133 1.16008 1.16321 1.15647 1.93538 1.81981 1.35062 1.86112 1.93530 1.31321 1.87093 1.86189 0.85139 0.89163 0.91453 0.86134 0.89070 0.90403 0.91525 0.90137 0.96263 0.96373 0.79708 0.93342 0.89492 0.92059 0.89487 0.90055 0.83640 0.81513 0.81889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.69 71.98 0.63 -0.49 16 2 C -0.61 -7.51 2.29 29.85 0.07 -7.44 16 3 H 0.20 0.62 6.50 -2.39 -0.02 0.60 16 4 C 0.53 12.21 6.82 87.66 0.60 12.80 16 5 O -0.58 -19.01 14.89 11.25 0.17 -18.84 16 6 N -0.59 -11.88 2.98 -819.67 -2.44 -14.32 16 7 C 0.10 1.42 6.02 86.22 0.52 1.94 16 8 C -0.13 -2.61 5.23 30.52 0.16 -2.45 16 9 C -0.09 -2.21 2.19 -10.77 -0.02 -2.23 16 10 C 0.16 5.64 5.65 86.38 0.49 6.12 16 11 N -0.75 -32.88 5.12 -343.44 -1.76 -34.64 16 12 C -0.24 -13.26 10.47 84.03 0.88 -12.38 16 13 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 14 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 15 N -0.99 -62.55 13.97 21.65 0.30 -62.25 16 16 Si 0.96 42.74 27.74 68.60 1.90 44.65 16 17 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.30 -13.53 7.11 99.48 0.71 -12.82 16 19 H -0.24 -8.91 6.52 99.48 0.65 -8.26 16 20 C -0.12 -2.52 5.36 30.68 0.16 -2.36 16 21 C 0.11 2.29 6.44 86.37 0.56 2.85 16 22 S 2.43 39.30 4.52 -56.49 -0.26 39.04 16 23 C -0.63 -1.08 10.01 113.37 1.14 0.06 16 24 O -0.97 -25.91 17.21 -121.20 -2.09 -28.00 16 25 O -0.98 -24.33 18.10 -127.37 -2.30 -26.63 16 26 H 0.13 -0.28 6.39 -2.39 -0.02 -0.29 16 27 H 0.09 0.71 7.45 -2.38 -0.02 0.69 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.12 0.92 4.98 -2.38 -0.01 0.91 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.08 1.77 7.15 -2.39 -0.02 1.75 16 32 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 34 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.37 14.73 4.70 -92.71 -0.44 14.30 16 37 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 38 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.08 1.97 7.00 -2.39 -0.02 1.95 16 42 H 0.15 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.17 -0.76 8.14 -2.39 -0.02 -0.78 16 44 H 0.16 -0.56 6.77 -2.39 -0.02 -0.58 16 Total: -1.00 -92.66 356.82 -0.33 -92.99 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 0.51 Total: 15.03 kcal Atomic # 6 Polarization: -12.68 SS G_CDS: 5.64 Total: -7.04 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -3.90 Total: -111.20 kcal Atomic # 8 Polarization: -69.25 SS G_CDS: -4.22 Total: -73.47 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 1.90 Total: 44.65 kcal Atomic # 16 Polarization: 39.30 SS G_CDS: -0.26 Total: 39.04 kcal Total: -92.66 -0.33 -92.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205529467.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.976 kcal (2) G-P(sol) polarization free energy of solvation -92.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds