Wall clock time and date at job start Fri Apr 10 2020 18:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81401 * 109.47480 * 2 1 4 4 O 1.42107 * 108.57731 * 65.50754 * 3 2 1 5 5 O 1.42100 * 108.57564 * 294.48783 * 3 2 1 6 6 C 1.81399 * 101.92601 * 179.97438 * 3 2 1 7 7 C 1.50698 * 109.47102 * 179.97438 * 6 3 2 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 3 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 3 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53004 * 109.41904 * 178.67276 * 12 11 10 14 14 N 1.46500 * 109.47150 * 295.13157 * 13 12 11 15 15 C 1.36934 * 119.99724 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00570 * 359.97438 * 15 14 13 17 17 C 1.38817 * 119.99789 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99915 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47150 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46998 * 120.00159 * 19 17 15 22 22 H 1.48507 * 109.47070 * 240.00019 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 24 24 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 25 25 H 1.08998 * 109.46756 * 60.00223 * 1 2 3 26 26 H 1.09000 * 109.47077 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46973 * 299.99944 * 1 2 3 28 28 H 1.08996 * 109.47192 * 239.99601 * 2 1 3 29 29 H 1.09009 * 109.47230 * 119.99720 * 2 1 3 30 30 H 1.09001 * 109.46570 * 59.99789 * 6 3 2 31 31 H 1.09001 * 109.47092 * 300.00037 * 6 3 2 32 32 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 33 33 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 34 34 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 35 35 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 36 36 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 37 37 H 1.09001 * 109.46592 * 55.13132 * 13 12 11 38 38 H 1.08997 * 109.47133 * 175.12697 * 13 12 11 39 39 H 0.96999 * 119.99704 * 359.97438 * 14 13 12 40 40 H 0.97003 * 120.00052 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.50232 * 301.42239 * 23 12 11 42 42 H 1.09007 * 109.52628 * 181.33900 * 23 12 11 43 43 H 1.08994 * 109.58580 * 353.38021 * 24 9 7 44 44 H 1.09006 * 109.57831 * 113.65514 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7593 2.3231 -1.2258 6 6 3.9331 1.4719 0.0008 7 6 4.6177 2.8144 0.0002 8 8 3.9575 3.8317 -0.0001 9 7 5.9636 2.8845 0.0002 10 6 6.6455 4.1859 -0.0009 11 6 7.6366 4.2276 1.1665 12 6 8.5782 3.0212 1.0703 13 6 9.5921 3.0746 2.2150 14 7 10.4482 4.2525 2.0544 15 6 11.4365 4.5101 2.9666 16 1 11.5845 3.8452 3.8047 17 6 12.2481 5.6259 2.8142 18 7 12.0680 6.4360 1.7926 19 14 13.5966 5.9769 4.0582 20 1 13.5919 4.9227 5.1041 21 1 14.9131 5.9877 3.3713 22 1 13.3564 7.2999 4.6886 23 6 7.7669 1.7273 1.1679 24 6 6.7769 1.6608 0.0001 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 4.2260 0.9146 -0.8890 31 1 4.2254 0.9149 0.8910 32 1 7.1821 4.3165 -0.9407 33 1 5.9113 4.9832 0.1144 34 1 8.2155 5.1499 1.1195 35 1 7.0904 4.1880 2.1090 36 1 9.1055 3.0481 0.1167 37 1 9.0632 3.1368 3.1661 38 1 10.2061 2.1742 2.1989 39 1 10.3150 4.8499 1.3019 40 1 12.6349 7.2159 1.6862 41 1 7.2197 1.7111 2.1104 42 1 8.4399 0.8709 1.1232 43 1 6.1296 0.7919 0.1184 44 1 7.3222 1.5847 -0.9407 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206951543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:35 Heat of formation + Delta-G solvation = -98.188364 kcal Electronic energy + Delta-G solvation = -25006.637066 eV Core-core repulsion = 21279.644524 eV Total energy + Delta-G solvation = -3726.992541 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.43955 -37.93426 -37.23916 -36.25419 -35.09141 -33.64222 -33.01318 -31.81586 -30.71544 -29.86744 -26.69986 -24.62411 -23.91303 -23.18079 -21.97694 -20.51906 -19.34020 -19.01777 -17.94804 -17.14040 -16.84190 -16.75244 -16.47754 -15.71783 -15.43804 -14.83347 -14.73328 -14.43572 -13.98463 -13.95754 -13.73308 -13.65321 -13.53439 -12.99085 -12.95842 -12.88246 -12.47180 -12.29332 -12.28928 -12.23251 -12.04977 -11.90545 -11.42867 -11.21879 -11.04384 -10.86879 -10.84237 -10.59674 -10.44667 -10.24535 -10.22854 -9.98985 -9.68748 -8.90051 -8.82344 -6.93983 -5.78746 -3.07244 -0.50325 2.19755 2.36866 2.61586 3.36242 3.42003 3.47594 3.49892 3.60030 3.95185 4.11698 4.12760 4.50849 4.53657 4.58811 4.68806 4.69736 4.85416 4.95166 5.10507 5.13767 5.15117 5.25125 5.34508 5.45641 5.49764 5.56735 5.71857 5.83395 5.86890 6.01183 6.08891 6.21989 6.25426 6.43655 6.61162 6.73678 6.85744 7.07947 7.68539 7.73439 8.40354 9.51607 10.09309 10.43703 11.44204 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037232 B = 0.002321 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.866713 B =12060.872676 C =12248.023720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.621 4.621 3 S 2.449 3.551 4 O -0.918 6.918 5 O -0.920 6.920 6 C -0.661 4.661 7 C 0.541 3.459 8 O -0.533 6.533 9 N -0.595 5.595 10 C 0.107 3.893 11 C -0.125 4.125 12 C -0.095 4.095 13 C 0.159 3.841 14 N -0.732 5.732 15 C -0.239 4.239 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.907 3.093 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.291 1.291 23 C -0.129 4.129 24 C 0.103 3.897 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.159 0.841 31 H 0.160 0.840 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.068 0.932 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.162 -18.498 -6.570 28.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.750 4.750 3 S 2.626 3.374 4 O -0.915 6.915 5 O -0.917 6.917 6 C -0.788 4.788 7 C 0.327 3.673 8 O -0.411 6.411 9 N -0.328 5.328 10 C -0.014 4.014 11 C -0.163 4.163 12 C -0.114 4.114 13 C 0.031 3.969 14 N -0.377 5.377 15 C -0.370 4.370 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.738 3.262 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.218 1.218 23 C -0.167 4.167 24 C -0.020 4.020 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.151 0.849 29 H 0.152 0.848 30 H 0.177 0.823 31 H 0.178 0.822 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.101 0.899 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.828 -17.192 -6.424 27.760 hybrid contribution 1.559 -0.616 0.453 1.737 sum -19.269 -17.808 -5.972 26.908 Atomic orbital electron populations 1.21520 0.90083 1.04951 1.04037 1.30340 1.07878 1.25159 1.11594 1.07581 0.76462 0.77496 0.75903 1.93595 1.79749 1.72428 1.45725 1.93585 1.79795 1.72489 1.45806 1.30894 1.28634 1.06069 1.13219 1.19060 0.83022 0.88266 0.77003 1.90859 1.63752 1.35943 1.50522 1.48024 1.04528 1.08655 1.71593 1.21858 0.95871 0.84044 0.99621 1.22001 0.96609 1.00168 0.97533 1.21379 0.95864 0.93386 1.00800 1.20658 0.90759 0.91060 0.94431 1.42378 1.37438 1.26771 1.31069 1.19264 1.07588 1.06489 1.03693 0.91206 1.24746 1.00069 0.97831 0.98416 1.69662 1.41792 1.16134 1.30591 0.86118 0.81816 0.77751 0.80501 1.20599 1.21886 1.21847 1.21943 0.97714 0.99114 0.97945 1.21919 0.93908 0.86130 1.00055 0.90663 0.89923 0.90621 0.84903 0.84848 0.82329 0.82216 0.90883 0.88721 0.89030 0.91649 0.90830 0.96420 0.96408 0.78231 0.93539 0.91324 0.90292 0.89922 0.90605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.92 37.16 0.37 -0.35 16 2 C -0.62 -2.42 6.53 37.16 0.24 -2.18 16 3 S 2.45 22.27 3.96 -107.50 -0.43 21.84 16 4 O -0.92 -12.28 17.95 -59.53 -1.07 -13.35 16 5 O -0.92 -11.99 17.95 -59.53 -1.07 -13.06 16 6 C -0.66 -4.59 4.64 36.00 0.17 -4.42 16 7 C 0.54 6.91 7.72 -10.99 -0.08 6.82 16 8 O -0.53 -9.15 15.04 2.55 0.04 -9.12 16 9 N -0.60 -7.05 2.97 -172.74 -0.51 -7.57 16 10 C 0.11 1.45 6.42 -3.71 -0.02 1.43 16 11 C -0.12 -1.89 5.27 -26.45 -0.14 -2.03 16 12 C -0.10 -1.39 2.19 -90.42 -0.20 -1.59 16 13 C 0.16 3.03 5.65 -4.04 -0.02 3.01 16 14 N -0.73 -18.06 5.32 -59.91 -0.32 -18.38 16 15 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -28.02 13.06 55.49 0.72 -27.29 16 19 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 23 C -0.13 -1.36 5.37 -26.59 -0.14 -1.50 16 24 C 0.10 0.88 6.34 -3.68 -0.02 0.86 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.13 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.13 0.20 8.14 -51.92 -0.42 -0.22 16 30 H 0.16 0.46 7.94 -51.92 -0.41 0.05 16 31 H 0.16 0.54 7.69 -51.92 -0.40 0.14 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.40 7.00 -51.93 -0.36 1.03 16 34 H 0.09 1.60 7.16 -51.93 -0.37 1.23 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.38 9.88 6.85 -40.82 -0.28 9.60 16 40 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 41 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.08 0.73 8.14 -51.92 -0.42 0.30 16 43 H 0.08 0.42 5.93 -51.93 -0.31 0.12 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -39.46 367.21 -9.40 -48.86 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.18 Total: 2.45 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -0.10 Total: -7.27 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.11 Total: -53.24 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -2.10 Total: -35.52 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 22.27 SS G_CDS: -0.43 Total: 21.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -39.46 -9.40 -48.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206951543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.325 kcal (2) G-P(sol) polarization free energy of solvation -39.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds