Wall clock time and date at job start Fri Apr 10 2020 18:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 S 1.81401 * 109.47480 * 2 1 4 4 O 1.42107 * 108.57731 * 65.50754 * 3 2 1 5 5 O 1.42100 * 108.57564 * 294.48783 * 3 2 1 6 6 C 1.81399 * 101.92601 * 179.97438 * 3 2 1 7 7 C 1.50698 * 109.47102 * 179.97438 * 6 3 2 8 8 O 1.21279 * 119.99808 * 0.02562 * 7 6 3 9 9 N 1.34778 * 120.00023 * 180.02562 * 7 6 3 10 10 C 1.46919 * 120.63255 * 179.97438 * 9 7 6 11 11 C 1.53195 * 108.89273 * 126.34238 * 10 9 7 12 12 C 1.53346 * 109.14901 * 54.57640 * 11 10 9 13 13 C 1.53004 * 109.41904 * 178.67276 * 12 11 10 14 14 N 1.46500 * 109.47150 * 295.13157 * 13 12 11 15 15 C 1.36934 * 119.99724 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00570 * 359.97438 * 15 14 13 17 17 C 1.38817 * 119.99789 * 179.97438 * 15 14 13 18 18 N 1.31618 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99915 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47150 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.46998 * 120.00159 * 19 17 15 22 22 H 1.48507 * 109.47070 * 240.00019 * 19 17 15 23 23 C 1.53034 * 109.61010 * 298.71225 * 12 11 10 24 24 C 1.46933 * 120.62741 * 0.02562 * 9 7 6 25 25 H 1.08998 * 109.46756 * 60.00223 * 1 2 3 26 26 H 1.09000 * 109.47077 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.46973 * 299.99944 * 1 2 3 28 28 H 1.08996 * 109.47192 * 239.99601 * 2 1 3 29 29 H 1.09009 * 109.47230 * 119.99720 * 2 1 3 30 30 H 1.09001 * 109.46570 * 59.99789 * 6 3 2 31 31 H 1.09001 * 109.47092 * 300.00037 * 6 3 2 32 32 H 1.09002 * 109.58751 * 246.20189 * 10 9 7 33 33 H 1.08996 * 109.58750 * 6.48373 * 10 9 7 34 34 H 1.08997 * 109.49914 * 174.65962 * 11 10 9 35 35 H 1.09002 * 109.49585 * 294.75599 * 11 10 9 36 36 H 1.09001 * 109.42242 * 58.75065 * 12 11 10 37 37 H 1.09001 * 109.46592 * 55.13132 * 13 12 11 38 38 H 1.08997 * 109.47133 * 175.12697 * 13 12 11 39 39 H 0.96999 * 119.99704 * 359.97438 * 14 13 12 40 40 H 0.97003 * 120.00052 * 179.97438 * 18 17 15 41 41 H 1.08994 * 109.50232 * 301.42239 * 23 12 11 42 42 H 1.09007 * 109.52628 * 181.33900 * 23 12 11 43 43 H 1.08994 * 109.58580 * 353.38021 * 24 9 7 44 44 H 1.09006 * 109.57831 * 113.65514 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7593 2.3231 -1.2258 6 6 3.9331 1.4719 0.0008 7 6 4.6177 2.8144 0.0002 8 8 3.9575 3.8317 -0.0001 9 7 5.9636 2.8845 0.0002 10 6 6.6455 4.1859 -0.0009 11 6 7.6366 4.2276 1.1665 12 6 8.5782 3.0212 1.0703 13 6 9.5921 3.0746 2.2150 14 7 10.4482 4.2525 2.0544 15 6 11.4365 4.5101 2.9666 16 1 11.5845 3.8452 3.8047 17 6 12.2481 5.6259 2.8142 18 7 12.0680 6.4360 1.7926 19 14 13.5966 5.9769 4.0582 20 1 13.5919 4.9227 5.1041 21 1 14.9131 5.9877 3.3713 22 1 13.3564 7.2999 4.6886 23 6 7.7669 1.7273 1.1679 24 6 6.7769 1.6608 0.0001 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 4.2260 0.9146 -0.8890 31 1 4.2254 0.9149 0.8910 32 1 7.1821 4.3165 -0.9407 33 1 5.9113 4.9832 0.1144 34 1 8.2155 5.1499 1.1195 35 1 7.0904 4.1880 2.1090 36 1 9.1055 3.0481 0.1167 37 1 9.0632 3.1368 3.1661 38 1 10.2061 2.1742 2.1989 39 1 10.3150 4.8499 1.3019 40 1 12.6349 7.2159 1.6862 41 1 7.2197 1.7111 2.1104 42 1 8.4399 0.8709 1.1232 43 1 6.1296 0.7919 0.1184 44 1 7.3222 1.5847 -0.9407 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206951543.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:34 Heat of formation + Delta-G solvation = -130.053145 kcal Electronic energy + Delta-G solvation = -25008.018826 eV Core-core repulsion = 21279.644524 eV Total energy + Delta-G solvation = -3728.374302 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.40596 -39.06959 -38.00102 -37.01099 -36.63543 -34.59954 -33.96557 -32.82253 -32.25046 -30.85645 -28.14336 -25.60343 -25.03983 -24.20123 -23.37754 -21.67525 -20.30838 -19.72101 -19.21140 -18.60703 -17.66999 -17.42020 -17.24404 -16.72317 -16.47195 -16.26220 -15.65898 -15.41225 -15.34297 -15.19205 -14.85973 -14.74860 -14.17276 -13.98237 -13.96554 -13.69484 -13.47462 -13.37177 -13.16296 -13.08908 -13.01750 -12.94834 -12.78897 -12.32717 -12.27227 -12.12873 -12.04797 -11.93050 -11.69393 -11.57281 -11.42014 -11.26920 -11.13717 -10.93552 -9.80930 -8.99172 -7.96307 -5.24348 -1.08447 1.31355 1.46019 1.47043 1.56873 1.76324 1.83677 2.55064 2.75537 3.07814 3.29780 3.37548 3.75116 3.78387 3.82416 3.83615 3.89326 4.05865 4.08602 4.22092 4.29157 4.31701 4.43765 4.46476 4.61917 4.71330 4.76044 4.77583 4.84819 4.88862 4.96033 4.99333 5.10204 5.14545 5.16965 5.24268 5.46118 5.49753 5.54622 6.19155 6.26779 6.83500 7.32921 8.10787 8.32596 9.27430 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.037232 B = 0.002321 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.866713 B =12060.872676 C =12248.023720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.578 4.578 3 S 2.418 3.582 4 O -0.983 6.983 5 O -0.981 6.981 6 C -0.646 4.646 7 C 0.523 3.477 8 O -0.593 6.593 9 N -0.595 5.595 10 C 0.112 3.888 11 C -0.117 4.117 12 C -0.086 4.086 13 C 0.155 3.845 14 N -0.746 5.746 15 C -0.243 4.243 16 H 0.075 0.925 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.973 3.027 20 H -0.265 1.265 21 H -0.292 1.292 22 H -0.296 1.296 23 C -0.123 4.123 24 C 0.098 3.902 25 H 0.065 0.935 26 H 0.112 0.888 27 H 0.064 0.936 28 H 0.175 0.825 29 H 0.173 0.827 30 H 0.211 0.789 31 H 0.207 0.793 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.012 0.988 38 H 0.027 0.973 39 H 0.374 0.626 40 H 0.251 0.749 41 H 0.069 0.931 42 H 0.104 0.896 43 H 0.134 0.866 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.051 -23.465 -6.627 31.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.712 4.712 3 S 2.604 3.396 4 O -0.980 6.980 5 O -0.978 6.978 6 C -0.774 4.774 7 C 0.312 3.688 8 O -0.475 6.475 9 N -0.327 5.327 10 C -0.011 4.011 11 C -0.155 4.155 12 C -0.105 4.105 13 C 0.029 3.971 14 N -0.389 5.389 15 C -0.375 4.375 16 H 0.093 0.907 17 C -0.271 4.271 18 N -0.621 5.621 19 Si 0.802 3.198 20 H -0.190 1.190 21 H -0.219 1.219 22 H -0.223 1.223 23 C -0.161 4.161 24 C -0.023 4.023 25 H 0.084 0.916 26 H 0.130 0.870 27 H 0.083 0.917 28 H 0.193 0.807 29 H 0.191 0.809 30 H 0.229 0.771 31 H 0.224 0.776 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.030 0.970 38 H 0.045 0.955 39 H 0.206 0.794 40 H 0.059 0.941 41 H 0.088 0.912 42 H 0.122 0.878 43 H 0.152 0.848 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.727 -22.175 -6.465 31.034 hybrid contribution 1.494 0.815 0.488 1.771 sum -19.232 -21.360 -5.977 29.358 Atomic orbital electron populations 1.21741 0.91064 1.06458 1.03303 1.30033 1.06755 1.18758 1.15634 1.07972 0.77606 0.80289 0.73740 1.93519 1.81213 1.76010 1.47292 1.93512 1.81167 1.75962 1.47136 1.30803 1.25366 1.03287 1.17936 1.20071 0.83060 0.89966 0.75749 1.90845 1.65007 1.38740 1.52899 1.48140 1.04768 1.08819 1.70930 1.21593 0.94994 0.85351 0.99128 1.21835 0.96648 0.99310 0.97716 1.21301 0.95048 0.95506 0.98664 1.20869 0.91047 0.89104 0.96056 1.42627 1.37709 1.28311 1.30229 1.19674 1.07706 1.06163 1.03930 0.90702 1.25575 1.02813 0.98141 1.00523 1.69817 1.43007 1.16676 1.32566 0.85081 0.78770 0.77460 0.78500 1.18965 1.21924 1.22319 1.21930 0.98020 0.97001 0.99150 1.22295 0.94110 0.86088 0.99828 0.91559 0.86959 0.91713 0.80731 0.80942 0.77149 0.77588 0.89936 0.91060 0.92476 0.92932 0.91008 0.96998 0.95462 0.79368 0.94063 0.91248 0.87777 0.84767 0.88930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 9.92 71.98 0.71 -0.44 16 2 C -0.58 -1.66 6.53 71.98 0.47 -1.19 16 3 S 2.42 41.04 3.96 -56.49 -0.22 40.81 16 4 O -0.98 -27.39 17.95 -125.75 -2.26 -29.64 16 5 O -0.98 -26.43 17.95 -125.75 -2.26 -28.68 16 6 C -0.65 -6.15 4.64 71.24 0.33 -5.82 16 7 C 0.52 12.65 7.72 87.66 0.68 13.33 16 8 O -0.59 -21.44 15.04 -0.15 0.00 -21.44 16 9 N -0.60 -12.90 2.97 -818.81 -2.43 -15.33 16 10 C 0.11 3.11 6.42 86.36 0.55 3.67 16 11 C -0.12 -3.67 5.27 30.78 0.16 -3.51 16 12 C -0.09 -2.42 2.19 -10.66 -0.02 -2.45 16 13 C 0.16 5.85 5.65 86.38 0.49 6.34 16 14 N -0.75 -37.38 5.32 -343.45 -1.83 -39.20 16 15 C -0.24 -13.55 9.99 84.04 0.84 -12.71 16 16 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 17 C -0.08 -4.53 5.50 84.86 0.47 -4.06 16 18 N -0.97 -59.71 13.06 21.65 0.28 -59.43 16 19 Si 0.97 46.37 29.55 68.60 2.03 48.40 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 23 C -0.12 -2.11 5.37 30.69 0.16 -1.94 16 24 C 0.10 1.19 6.34 86.38 0.55 1.74 16 25 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.17 -0.80 8.14 -2.39 -0.02 -0.82 16 29 H 0.17 -0.70 8.14 -2.39 -0.02 -0.71 16 30 H 0.21 -0.26 7.94 -2.39 -0.02 -0.28 16 31 H 0.21 0.00 7.69 -2.39 -0.02 -0.02 16 32 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.07 2.30 7.00 -2.39 -0.02 2.29 16 34 H 0.06 2.16 7.16 -2.39 -0.02 2.15 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.37 19.95 6.85 -92.71 -0.63 19.31 16 40 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 41 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.13 0.31 5.93 -2.39 -0.01 0.30 16 44 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -95.96 367.21 -0.94 -96.90 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: 0.35 Total: 14.67 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 5.39 Total: -7.04 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -3.98 Total: -113.96 kcal Atomic # 8 Polarization: -75.25 SS G_CDS: -4.52 Total: -79.77 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Atomic # 16 Polarization: 41.04 SS G_CDS: -0.22 Total: 40.81 kcal Total: -95.96 -0.94 -96.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206951543.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.152 kcal (2) G-P(sol) polarization free energy of solvation -95.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds