Wall clock time and date at job start Fri Apr 10 2020 18:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47136 * 2 1 4 4 C 1.53002 * 109.47011 * 240.00586 * 2 1 3 5 5 S 1.81397 * 109.47321 * 64.99398 * 4 2 1 6 6 C 1.81399 * 101.92250 * 180.02562 * 5 4 2 7 7 O 1.42099 * 108.58308 * 294.49331 * 5 4 2 8 8 O 1.42103 * 108.57431 * 65.51806 * 5 4 2 9 9 C 1.50695 * 109.47399 * 120.00160 * 2 1 3 10 10 O 1.21284 * 119.99902 * 98.77863 * 9 2 1 11 11 N 1.34774 * 120.00288 * 278.77972 * 9 2 1 12 12 C 1.46927 * 120.62873 * 355.59599 * 11 9 2 13 13 C 1.53191 * 108.77100 * 126.37181 * 12 11 9 14 14 C 1.53045 * 109.31445 * 54.63677 * 13 12 11 15 15 C 1.53034 * 109.53969 * 298.63398 * 14 13 12 16 16 H 1.08995 * 109.52638 * 301.39897 * 15 14 13 17 17 N 1.46491 * 109.50002 * 181.31273 * 15 14 13 18 18 C 1.36938 * 120.00225 * 85.16341 * 17 15 14 19 19 H 1.08002 * 119.99304 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00202 * 180.02562 * 18 17 15 21 21 N 1.31616 * 120.00040 * 359.72491 * 20 18 17 22 22 Si 1.86797 * 119.99635 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47265 * 90.00015 * 22 20 18 24 24 H 1.48506 * 109.46923 * 209.99790 * 22 20 18 25 25 H 1.48503 * 109.47442 * 329.99785 * 22 20 18 26 26 C 1.46922 * 120.63165 * 175.58022 * 11 9 2 27 27 H 1.09000 * 109.47258 * 172.20065 * 1 2 3 28 28 H 1.09007 * 109.47101 * 292.19222 * 1 2 3 29 29 H 1.08993 * 109.47547 * 52.19395 * 1 2 3 30 30 H 1.08994 * 109.47369 * 185.00197 * 4 2 1 31 31 H 1.08999 * 109.46806 * 304.99828 * 4 2 1 32 32 H 1.09001 * 109.47064 * 60.00565 * 6 5 4 33 33 H 1.08996 * 109.47270 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47120 * 300.00253 * 6 5 4 35 35 H 1.08994 * 109.59238 * 246.15733 * 12 11 9 36 36 H 1.08993 * 109.58666 * 6.58892 * 12 11 9 37 37 H 1.09007 * 109.49784 * 174.58803 * 13 12 11 38 38 H 1.09003 * 109.50165 * 294.68893 * 13 12 11 39 39 H 1.08995 * 109.46205 * 178.60876 * 14 13 12 40 40 H 1.09007 * 109.45510 * 58.65212 * 14 13 12 41 41 H 0.97006 * 120.00274 * 265.16436 * 17 15 14 42 42 H 0.97002 * 119.99626 * 180.02562 * 21 20 18 43 43 H 1.09008 * 109.58520 * 113.84069 * 26 11 9 44 44 H 1.09002 * 109.70589 * 353.48634 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 16 1.5599 0.2157 -2.7266 6 6 2.2536 -0.8026 -4.0580 7 8 0.1431 0.1969 -2.8342 8 8 2.2380 1.4644 -2.7109 9 6 2.0324 -0.7104 1.2304 10 8 2.3856 -1.8685 1.1602 11 7 2.0891 -0.0589 2.4088 12 6 1.7564 1.3699 2.4910 13 6 0.6849 1.5653 3.5682 14 6 1.1737 0.9570 4.8848 15 6 1.4048 -0.5445 4.7002 16 1 0.4771 -1.0192 4.3806 17 7 1.8426 -1.1315 5.9690 18 6 0.9160 -1.5250 6.8973 19 1 -0.1376 -1.4030 6.6937 20 6 1.3309 -2.0807 8.0997 21 7 2.6148 -2.2344 8.3454 22 14 0.0668 -2.6169 9.3662 23 1 -0.3050 -4.0342 9.1252 24 1 0.6425 -2.4809 10.7284 25 1 -1.1419 -1.7617 9.2520 26 6 2.4844 -0.7639 3.6357 27 1 -0.3634 -1.0181 -0.1395 28 1 -0.3634 0.3882 0.9516 29 1 -0.3634 0.6299 -0.8119 30 1 3.1262 -0.7994 -1.2057 31 1 1.6053 -1.7197 -1.2953 32 1 1.8123 -1.7986 -4.0211 33 1 2.0321 -0.3421 -5.0207 34 1 3.3337 -0.8787 -3.9320 35 1 2.6481 1.9381 2.7554 36 1 1.3743 1.7120 1.5293 37 1 0.4982 2.6303 3.7067 38 1 -0.2362 1.0712 3.2591 39 1 0.4235 1.1165 5.6592 40 1 2.1079 1.4345 5.1806 41 1 2.7889 -1.2414 6.1516 42 1 2.9046 -2.6230 9.1856 43 1 3.4356 -0.3696 3.9934 44 1 2.5845 -1.8299 3.4311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211301625.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:43 Heat of formation + Delta-G solvation = -94.091676 kcal Electronic energy + Delta-G solvation = -25572.785179 eV Core-core repulsion = 21845.970283 eV Total energy + Delta-G solvation = -3726.814896 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.35106 -37.55413 -37.34170 -36.43684 -35.03678 -34.36938 -32.19495 -31.25996 -30.17675 -28.54394 -27.71527 -25.64145 -24.18706 -22.84782 -22.09409 -20.06173 -19.24252 -18.72311 -17.88917 -17.22614 -16.71113 -16.46923 -16.15626 -15.63053 -15.28458 -14.95870 -14.34256 -14.09974 -14.06040 -13.69668 -13.63364 -13.54270 -13.32589 -13.20219 -12.94541 -12.93487 -12.58020 -12.34058 -12.27847 -12.02240 -11.79039 -11.63245 -11.44550 -11.08223 -11.00807 -10.94218 -10.88819 -10.66744 -10.44665 -10.39026 -10.11056 -9.76945 -9.57300 -8.94138 -8.46865 -7.01913 -5.80367 -3.10138 -0.42734 2.32907 2.59863 2.94820 3.28488 3.41885 3.47180 3.48492 3.62172 4.03487 4.30251 4.34347 4.38706 4.56004 4.56245 4.72878 4.95807 5.04524 5.11890 5.20234 5.26632 5.27994 5.47936 5.50666 5.53910 5.58375 5.66871 5.73418 5.78412 5.93661 6.05227 6.11249 6.20838 6.36122 6.51081 6.64888 6.84014 7.01167 7.48897 7.66744 8.19235 8.37634 9.48814 10.03759 10.38723 11.42118 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029931 B = 0.002692 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.274406 B =10400.463832 C =10596.351814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.099 4.099 3 H 0.107 0.893 4 C -0.593 4.593 5 S 2.419 3.581 6 C -0.656 4.656 7 O -0.934 6.934 8 O -0.940 6.940 9 C 0.525 3.475 10 O -0.539 6.539 11 N -0.601 5.601 12 C 0.100 3.900 13 C -0.134 4.134 14 C -0.138 4.138 15 C 0.168 3.832 16 H 0.050 0.950 17 N -0.721 5.721 18 C -0.239 4.239 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.106 3.894 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.137 0.863 31 H 0.144 0.856 32 H 0.130 0.870 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.384 0.616 42 H 0.256 0.744 43 H 0.066 0.934 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.718 7.427 -24.097 25.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.121 4.121 3 H 0.125 0.875 4 C -0.722 4.722 5 S 2.601 3.399 6 C -0.806 4.806 7 O -0.931 6.931 8 O -0.937 6.937 9 C 0.311 3.689 10 O -0.416 6.416 11 N -0.334 5.334 12 C -0.022 4.022 13 C -0.173 4.173 14 C -0.178 4.178 15 C 0.057 3.943 16 H 0.068 0.932 17 N -0.362 5.362 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.580 5.580 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.017 4.017 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.155 0.845 31 H 0.162 0.838 32 H 0.149 0.851 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.218 0.782 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.137 7.529 -24.081 25.257 hybrid contribution 0.222 -1.073 0.958 1.456 sum -0.915 6.457 -23.123 24.025 Atomic orbital electron populations 1.22216 0.91045 1.04916 1.04728 1.21015 0.98815 1.00446 0.91829 0.87459 1.30251 1.12482 1.14753 1.14717 1.07882 0.76206 0.77213 0.78550 1.30252 1.14023 1.16815 1.19463 1.93605 1.27214 1.86836 1.85438 1.93609 1.76315 1.37795 1.85961 1.20121 0.77959 0.86806 0.84008 1.90690 1.48680 1.17082 1.85132 1.48083 1.66937 1.10513 1.07888 1.21911 0.99153 0.81008 1.00171 1.21954 0.98083 1.01066 0.96184 1.22287 1.01381 0.98690 0.95457 1.20474 0.95364 0.91802 0.86609 0.93203 1.42310 1.06757 1.73169 1.13981 1.19200 0.89036 1.33407 0.95400 0.91151 1.24751 0.96024 1.01761 0.98279 1.69661 1.12872 1.50289 1.25155 0.86183 0.80361 0.78531 0.81058 1.21671 1.21750 1.20744 1.22034 0.98188 0.98456 0.83009 0.90658 0.90499 0.89408 0.84497 0.83787 0.85106 0.85205 0.85238 0.90995 0.89984 0.91132 0.91726 0.91482 0.92421 0.78188 0.93438 0.91584 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 8.28 37.16 0.31 -1.36 16 2 C -0.10 -1.00 1.86 -91.77 -0.17 -1.17 16 3 H 0.11 0.89 6.51 -51.93 -0.34 0.56 16 4 C -0.59 -4.47 4.65 37.16 0.17 -4.30 16 5 S 2.42 16.33 5.15 -107.50 -0.55 15.78 16 6 C -0.66 -2.28 10.62 101.05 1.07 -1.20 16 7 O -0.93 -9.07 15.62 -57.83 -0.90 -9.97 16 8 O -0.94 -9.54 18.10 -57.83 -1.05 -10.59 16 9 C 0.53 7.45 6.83 -10.99 -0.08 7.37 16 10 O -0.54 -9.49 15.58 5.55 0.09 -9.41 16 11 N -0.60 -8.55 2.97 -172.77 -0.51 -9.06 16 12 C 0.10 1.12 5.92 -3.71 -0.02 1.10 16 13 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 14 C -0.14 -2.28 5.47 -26.69 -0.15 -2.43 16 15 C 0.17 3.28 2.92 -67.82 -0.20 3.08 16 16 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 17 N -0.72 -17.78 5.12 -53.32 -0.27 -18.05 16 18 C -0.24 -6.56 9.93 -15.06 -0.15 -6.71 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 22 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.11 1.84 5.89 -3.71 -0.02 1.82 16 27 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 28 H 0.08 0.73 7.50 -51.93 -0.39 0.34 16 29 H 0.09 0.79 5.95 -51.93 -0.31 0.48 16 30 H 0.14 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.14 0.97 8.04 -51.92 -0.42 0.55 16 32 H 0.13 0.27 8.14 -51.92 -0.42 -0.16 16 33 H 0.13 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.13 0.26 8.14 -51.92 -0.42 -0.16 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.70 5.11 -51.93 -0.27 0.44 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.38 10.05 7.80 -40.82 -0.32 9.73 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.07 1.12 8.14 -51.92 -0.42 0.70 16 44 H 0.09 1.82 7.04 -51.93 -0.37 1.45 16 LS Contribution 362.14 15.07 5.46 5.46 Total: -1.00 -36.95 362.14 -8.55 -45.50 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.02 Total: 6.32 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: 0.51 Total: -6.04 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.06 Total: -54.31 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -1.86 Total: -29.96 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 16.33 SS G_CDS: -0.55 Total: 15.78 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.95 -8.55 -45.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211301625.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.593 kcal (2) G-P(sol) polarization free energy of solvation -36.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds