Wall clock time and date at job start Fri Apr 10 2020 18:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47136 * 2 1 4 4 C 1.53002 * 109.47011 * 240.00586 * 2 1 3 5 5 S 1.81397 * 109.47321 * 64.99398 * 4 2 1 6 6 C 1.81399 * 101.92250 * 180.02562 * 5 4 2 7 7 O 1.42099 * 108.58308 * 294.49331 * 5 4 2 8 8 O 1.42103 * 108.57431 * 65.51806 * 5 4 2 9 9 C 1.50695 * 109.47399 * 120.00160 * 2 1 3 10 10 O 1.21284 * 119.99902 * 98.77863 * 9 2 1 11 11 N 1.34774 * 120.00288 * 278.77972 * 9 2 1 12 12 C 1.46927 * 120.62873 * 355.59599 * 11 9 2 13 13 C 1.53191 * 108.77100 * 126.37181 * 12 11 9 14 14 C 1.53045 * 109.31445 * 54.63677 * 13 12 11 15 15 C 1.53034 * 109.53969 * 298.63398 * 14 13 12 16 16 H 1.08995 * 109.52638 * 301.39897 * 15 14 13 17 17 N 1.46491 * 109.50002 * 181.31273 * 15 14 13 18 18 C 1.36938 * 120.00225 * 85.16341 * 17 15 14 19 19 H 1.08002 * 119.99304 * 0.02562 * 18 17 15 20 20 C 1.38812 * 120.00202 * 180.02562 * 18 17 15 21 21 N 1.31616 * 120.00040 * 359.72491 * 20 18 17 22 22 Si 1.86797 * 119.99635 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47265 * 90.00015 * 22 20 18 24 24 H 1.48506 * 109.46923 * 209.99790 * 22 20 18 25 25 H 1.48503 * 109.47442 * 329.99785 * 22 20 18 26 26 C 1.46922 * 120.63165 * 175.58022 * 11 9 2 27 27 H 1.09000 * 109.47258 * 172.20065 * 1 2 3 28 28 H 1.09007 * 109.47101 * 292.19222 * 1 2 3 29 29 H 1.08993 * 109.47547 * 52.19395 * 1 2 3 30 30 H 1.08994 * 109.47369 * 185.00197 * 4 2 1 31 31 H 1.08999 * 109.46806 * 304.99828 * 4 2 1 32 32 H 1.09001 * 109.47064 * 60.00565 * 6 5 4 33 33 H 1.08996 * 109.47270 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.47120 * 300.00253 * 6 5 4 35 35 H 1.08994 * 109.59238 * 246.15733 * 12 11 9 36 36 H 1.08993 * 109.58666 * 6.58892 * 12 11 9 37 37 H 1.09007 * 109.49784 * 174.58803 * 13 12 11 38 38 H 1.09003 * 109.50165 * 294.68893 * 13 12 11 39 39 H 1.08995 * 109.46205 * 178.60876 * 14 13 12 40 40 H 1.09007 * 109.45510 * 58.65212 * 14 13 12 41 41 H 0.97006 * 120.00274 * 265.16436 * 17 15 14 42 42 H 0.97002 * 119.99626 * 180.02562 * 21 20 18 43 43 H 1.09008 * 109.58520 * 113.84069 * 26 11 9 44 44 H 1.09002 * 109.70589 * 353.48634 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7211 -1.2493 5 16 1.5599 0.2157 -2.7266 6 6 2.2536 -0.8026 -4.0580 7 8 0.1431 0.1969 -2.8342 8 8 2.2380 1.4644 -2.7109 9 6 2.0324 -0.7104 1.2304 10 8 2.3856 -1.8685 1.1602 11 7 2.0891 -0.0589 2.4088 12 6 1.7564 1.3699 2.4910 13 6 0.6849 1.5653 3.5682 14 6 1.1737 0.9570 4.8848 15 6 1.4048 -0.5445 4.7002 16 1 0.4771 -1.0192 4.3806 17 7 1.8426 -1.1315 5.9690 18 6 0.9160 -1.5250 6.8973 19 1 -0.1376 -1.4030 6.6937 20 6 1.3309 -2.0807 8.0997 21 7 2.6148 -2.2344 8.3454 22 14 0.0668 -2.6169 9.3662 23 1 -0.3050 -4.0342 9.1252 24 1 0.6425 -2.4809 10.7284 25 1 -1.1419 -1.7617 9.2520 26 6 2.4844 -0.7639 3.6357 27 1 -0.3634 -1.0181 -0.1395 28 1 -0.3634 0.3882 0.9516 29 1 -0.3634 0.6299 -0.8119 30 1 3.1262 -0.7994 -1.2057 31 1 1.6053 -1.7197 -1.2953 32 1 1.8123 -1.7986 -4.0211 33 1 2.0321 -0.3421 -5.0207 34 1 3.3337 -0.8787 -3.9320 35 1 2.6481 1.9381 2.7554 36 1 1.3743 1.7120 1.5293 37 1 0.4982 2.6303 3.7067 38 1 -0.2362 1.0712 3.2591 39 1 0.4235 1.1165 5.6592 40 1 2.1079 1.4345 5.1806 41 1 2.7889 -1.2414 6.1516 42 1 2.9046 -2.6230 9.1856 43 1 3.4356 -0.3696 3.9934 44 1 2.5845 -1.8299 3.4311 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001211301625.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:42 Heat of formation + Delta-G solvation = -122.608027 kcal Electronic energy + Delta-G solvation = -25574.021740 eV Core-core repulsion = 21845.970283 eV Total energy + Delta-G solvation = -3728.051457 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.49028 -38.86795 -37.97604 -37.08498 -36.30506 -35.68465 -33.76604 -32.77517 -30.54279 -30.15136 -28.41589 -26.80584 -25.97880 -24.01809 -23.40530 -21.43858 -19.91950 -19.78735 -19.14476 -18.78007 -17.46466 -17.08960 -17.00822 -16.71093 -16.55132 -16.25463 -15.66809 -15.56920 -15.15857 -15.03637 -14.71587 -14.50843 -14.08375 -13.93903 -13.91278 -13.82841 -13.64760 -13.50949 -12.99422 -12.94917 -12.89691 -12.75573 -12.51871 -12.47381 -12.29164 -12.19170 -12.07744 -12.00585 -11.85232 -11.73193 -11.65441 -11.53692 -10.92979 -10.70570 -9.71793 -9.04937 -7.97425 -5.26979 -0.92954 1.45060 1.47239 1.49513 1.55436 1.85865 1.87855 2.54535 2.71355 3.13892 3.27667 3.35815 3.51646 3.71172 3.76696 3.97161 4.00350 4.07870 4.13926 4.17322 4.21210 4.28164 4.35123 4.42207 4.57675 4.63108 4.73339 4.78766 4.81883 4.86095 4.91681 5.01305 5.06074 5.15630 5.23111 5.40123 5.40290 5.49297 5.58105 6.24329 6.37551 7.06487 7.30270 8.03004 8.27183 9.25942 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.029931 B = 0.002692 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.274406 B =10400.463832 C =10596.351814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.099 4.099 3 H 0.129 0.871 4 C -0.600 4.600 5 S 2.436 3.564 6 C -0.641 4.641 7 O -0.967 6.967 8 O -0.975 6.975 9 C 0.520 3.480 10 O -0.580 6.580 11 N -0.602 5.602 12 C 0.095 3.905 13 C -0.125 4.125 14 C -0.128 4.128 15 C 0.167 3.833 16 H 0.033 0.967 17 N -0.736 5.736 18 C -0.239 4.239 19 H 0.073 0.927 20 C -0.074 4.074 21 N -0.969 5.969 22 Si 0.972 3.028 23 H -0.289 1.289 24 H -0.294 1.294 25 H -0.268 1.268 26 C 0.119 3.881 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.143 0.857 34 H 0.150 0.850 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.046 0.954 40 H 0.056 0.944 41 H 0.373 0.627 42 H 0.252 0.748 43 H 0.068 0.932 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.359 8.707 -26.327 27.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.121 4.121 3 H 0.147 0.853 4 C -0.728 4.728 5 S 2.621 3.379 6 C -0.794 4.794 7 O -0.964 6.964 8 O -0.973 6.973 9 C 0.308 3.692 10 O -0.459 6.459 11 N -0.334 5.334 12 C -0.026 4.026 13 C -0.164 4.164 14 C -0.168 4.168 15 C 0.058 3.942 16 H 0.051 0.949 17 N -0.376 5.376 18 C -0.371 4.371 19 H 0.091 0.909 20 C -0.267 4.267 21 N -0.619 5.619 22 Si 0.801 3.199 23 H -0.217 1.217 24 H -0.220 1.220 25 H -0.193 1.193 26 C -0.005 4.005 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.116 0.884 30 H 0.168 0.832 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.106 0.894 36 H 0.134 0.866 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.830 8.880 -26.326 27.844 hybrid contribution 0.439 -1.504 1.530 2.190 sum -1.391 7.376 -24.796 25.908 Atomic orbital electron populations 1.22255 0.90724 1.04819 1.05247 1.21108 0.98994 1.01351 0.90623 0.85284 1.30347 1.13419 1.14981 1.14066 1.07218 0.75156 0.76801 0.78707 1.30113 1.15203 1.16695 1.17344 1.93558 1.29490 1.87426 1.85941 1.93561 1.76662 1.40436 1.86611 1.20910 0.76925 0.86474 0.84885 1.90667 1.50387 1.19052 1.85843 1.48161 1.66773 1.11724 1.06789 1.22215 0.99674 0.79071 1.01619 1.21914 0.98214 1.02612 0.93638 1.22077 1.00891 0.96219 0.97659 1.20632 0.95073 0.93373 0.85122 0.94915 1.42491 1.05844 1.73828 1.15405 1.19539 0.89616 1.32069 0.95832 0.90874 1.25555 0.97840 1.02815 1.00453 1.69814 1.14697 1.51911 1.25493 0.85156 0.78447 0.78011 0.78246 1.21651 1.22029 1.19307 1.21590 0.97566 0.97326 0.84065 0.91345 0.90260 0.88405 0.83221 0.83274 0.83126 0.83883 0.83144 0.89428 0.86582 0.87890 0.91609 0.93515 0.92547 0.79485 0.93959 0.91343 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.08 8.28 71.98 0.60 -2.48 16 2 C -0.10 -1.82 1.86 -11.54 -0.02 -1.84 16 3 H 0.13 1.77 6.51 -2.39 -0.02 1.75 16 4 C -0.60 -7.94 4.65 71.98 0.33 -7.60 16 5 S 2.44 27.66 5.15 -56.49 -0.29 27.37 16 6 C -0.64 -2.16 10.62 113.37 1.20 -0.95 16 7 O -0.97 -17.21 15.62 -127.37 -1.99 -19.20 16 8 O -0.98 -17.94 18.10 -127.37 -2.31 -20.25 16 9 C 0.52 14.35 6.83 87.66 0.60 14.95 16 10 O -0.58 -20.65 15.58 -3.04 -0.05 -20.70 16 11 N -0.60 -16.57 2.97 -818.92 -2.43 -19.00 16 12 C 0.10 1.86 5.92 86.36 0.51 2.37 16 13 C -0.13 -2.74 6.08 30.67 0.19 -2.55 16 14 C -0.13 -4.18 5.47 30.62 0.17 -4.02 16 15 C 0.17 6.66 2.92 45.07 0.13 6.79 16 16 H 0.03 1.40 8.08 -2.39 -0.02 1.39 16 17 N -0.74 -37.45 5.12 -322.59 -1.65 -39.10 16 18 C -0.24 -13.36 9.93 84.03 0.83 -12.53 16 19 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 20 C -0.07 -4.29 5.50 84.86 0.47 -3.83 16 21 N -0.97 -59.64 13.06 21.65 0.28 -59.36 16 22 Si 0.97 46.47 29.55 68.60 2.03 48.50 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 24 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 25 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 26 C 0.12 4.22 5.89 86.37 0.51 4.73 16 27 H 0.07 1.30 8.13 -2.39 -0.02 1.28 16 28 H 0.08 1.34 7.50 -2.38 -0.02 1.32 16 29 H 0.10 1.58 5.95 -2.39 -0.01 1.57 16 30 H 0.15 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.15 1.80 8.04 -2.39 -0.02 1.78 16 32 H 0.15 0.02 8.14 -2.39 -0.02 0.00 16 33 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.12 1.53 5.11 -2.39 -0.01 1.52 16 37 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 40 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.37 20.36 7.80 -92.70 -0.72 19.63 16 42 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 43 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 44 H 0.06 2.62 7.04 -2.39 -0.02 2.60 16 Total: -1.00 -82.58 362.14 -0.62 -83.20 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.28 Total: 25.52 kcal Atomic # 6 Polarization: -12.48 SS G_CDS: 5.52 Total: -6.97 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -3.80 Total: -117.47 kcal Atomic # 8 Polarization: -55.81 SS G_CDS: -4.34 Total: -60.15 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Atomic # 16 Polarization: 27.66 SS G_CDS: -0.29 Total: 27.37 kcal Total: -82.58 -0.62 -83.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211301625.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.412 kcal (2) G-P(sol) polarization free energy of solvation -82.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds