Wall clock time and date at job start Fri Apr 10 2020 18:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46899 * 2 1 4 4 C 1.53001 * 109.46978 * 120.00026 * 2 1 3 5 5 S 1.81404 * 109.47317 * 294.99862 * 4 2 1 6 6 C 1.81398 * 101.92013 * 179.97438 * 5 4 2 7 7 O 1.42092 * 108.57983 * 294.48965 * 5 4 2 8 8 O 1.42100 * 108.57297 * 65.51611 * 5 4 2 9 9 C 1.50694 * 109.47174 * 240.00156 * 2 1 3 10 10 O 1.21281 * 120.00129 * 264.20074 * 9 2 1 11 11 N 1.34780 * 120.00159 * 84.19952 * 9 2 1 12 12 C 1.46918 * 120.63132 * 175.17534 * 11 9 2 13 13 C 1.53195 * 108.77255 * 233.63052 * 12 11 9 14 14 C 1.53040 * 109.31127 * 305.36183 * 13 12 11 15 15 C 1.53348 * 109.60501 * 61.37817 * 14 13 12 16 16 H 1.08994 * 109.47519 * 58.54874 * 15 14 13 17 17 N 1.46504 * 109.68313 * 178.74623 * 15 14 13 18 18 C 1.36938 * 120.00203 * 274.74957 * 17 15 14 19 19 H 1.08004 * 119.99497 * 359.97438 * 18 17 15 20 20 C 1.38804 * 120.00355 * 179.97438 * 18 17 15 21 21 N 1.31617 * 120.00276 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00121 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47076 * 90.00219 * 22 20 18 24 24 H 1.48496 * 109.47326 * 209.99933 * 22 20 18 25 25 H 1.48495 * 109.47440 * 330.00527 * 22 20 18 26 26 C 1.46924 * 120.62756 * 355.19330 * 11 9 2 27 27 H 1.09000 * 109.47054 * 307.79737 * 1 2 3 28 28 H 1.08998 * 109.47052 * 67.80174 * 1 2 3 29 29 H 1.09003 * 109.46571 * 187.80280 * 1 2 3 30 30 H 1.08999 * 109.46916 * 55.00416 * 4 2 1 31 31 H 1.09002 * 109.46846 * 175.00482 * 4 2 1 32 32 H 1.09004 * 109.46920 * 60.00429 * 6 5 4 33 33 H 1.08998 * 109.47175 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.47743 * 300.00353 * 6 5 4 35 35 H 1.08997 * 109.59284 * 353.41306 * 12 11 9 36 36 H 1.08995 * 109.58883 * 113.84358 * 12 11 9 37 37 H 1.08998 * 109.49903 * 65.31641 * 13 12 11 38 38 H 1.09002 * 109.49742 * 185.38423 * 13 12 11 39 39 H 1.09010 * 109.45914 * 181.38861 * 14 13 12 40 40 H 1.08999 * 109.46302 * 301.35999 * 14 13 12 41 41 H 0.96993 * 120.00072 * 94.74893 * 17 15 14 42 42 H 0.96993 * 120.00424 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.59065 * 246.15834 * 26 11 9 44 44 H 1.09004 * 109.58938 * 6.44136 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 16 1.5601 0.2156 2.7267 6 6 2.2538 -0.8029 4.0579 7 8 2.2381 1.4642 2.7110 8 8 0.1434 0.1966 2.8343 9 6 2.0324 -0.7103 -1.2304 10 8 2.3346 -1.8835 -1.1725 11 7 2.1458 -0.0420 -2.3953 12 6 2.7322 -0.6902 -3.5762 13 6 3.8684 0.1891 -4.1080 14 6 3.3377 1.6013 -4.3648 15 6 2.8323 2.2080 -3.0502 16 1 3.6450 2.2302 -2.3242 17 7 2.3514 3.5712 -3.2886 18 6 3.2314 4.6203 -3.2733 19 1 4.2800 4.4427 -3.0851 20 6 2.7758 5.9117 -3.4997 21 7 1.4979 6.1282 -3.7285 22 14 3.9762 7.3428 -3.4781 23 1 4.5136 7.5588 -4.8455 24 1 3.2753 8.5700 -3.0223 25 1 5.0941 7.0374 -2.5496 26 6 1.6857 1.3488 -2.5083 27 1 -0.3633 0.6298 0.8120 28 1 -0.3633 0.3883 -0.9515 29 1 -0.3632 -1.0182 0.1395 30 1 1.6054 -1.7198 1.2951 31 1 3.1263 -0.7994 1.2056 32 1 3.3339 -0.8791 3.9318 33 1 2.0316 -0.3429 5.0207 34 1 1.8127 -1.7989 4.0210 35 1 3.1262 -1.6679 -3.2987 36 1 1.9693 -0.8065 -4.3459 37 1 4.6714 0.2304 -3.3722 38 1 4.2490 -0.2318 -5.0387 39 1 4.1382 2.2226 -4.7666 40 1 2.5181 1.5565 -5.0820 41 1 1.4096 3.7306 -3.4573 42 1 1.1796 7.0306 -3.8871 43 1 0.8374 1.3988 -3.1908 44 1 1.3867 1.7156 -1.5263 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001211301628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:51 Heat of formation + Delta-G solvation = -94.221943 kcal Electronic energy + Delta-G solvation = -25901.419104 eV Core-core repulsion = 22174.598560 eV Total energy + Delta-G solvation = -3726.820544 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.33931 -37.55556 -37.17013 -36.25792 -34.90805 -34.34611 -32.28252 -31.32135 -30.04603 -28.33699 -27.67630 -25.71478 -23.83246 -23.47006 -21.62852 -20.05589 -19.06912 -18.87262 -17.77543 -17.22368 -16.56671 -16.32524 -16.01332 -15.62990 -15.37083 -14.68498 -14.34391 -14.14796 -13.94018 -13.67419 -13.58301 -13.51372 -13.35879 -13.17447 -12.89575 -12.75191 -12.49671 -12.23549 -12.15078 -11.88519 -11.71071 -11.47329 -11.28552 -11.12935 -10.96725 -10.92585 -10.81590 -10.67923 -10.47632 -10.41794 -10.11068 -9.73113 -9.60126 -8.94756 -8.49198 -7.04153 -5.81539 -3.11743 -0.27803 2.48777 2.59128 2.99154 3.41951 3.43009 3.48220 3.49432 3.76503 4.16803 4.40958 4.41528 4.48113 4.59616 4.69202 4.92013 5.11504 5.19954 5.21939 5.26019 5.30413 5.36704 5.41865 5.53811 5.56379 5.62496 5.73571 5.75850 5.82326 5.92990 6.05989 6.10339 6.28299 6.34065 6.38684 6.64412 6.78165 6.96623 7.46062 7.66782 8.16280 8.36136 9.47882 10.01038 10.36152 11.40770 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011982 B = 0.004078 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.298980 B = 6864.011403 C = 8429.835199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.102 4.102 3 H 0.114 0.886 4 C -0.592 4.592 5 S 2.419 3.581 6 C -0.657 4.657 7 O -0.931 6.931 8 O -0.933 6.933 9 C 0.531 3.469 10 O -0.550 6.550 11 N -0.601 5.601 12 C 0.113 3.887 13 C -0.132 4.132 14 C -0.138 4.138 15 C 0.166 3.834 16 H 0.053 0.947 17 N -0.721 5.721 18 C -0.242 4.242 19 H 0.071 0.929 20 C -0.009 4.009 21 N -0.931 5.931 22 Si 0.907 3.093 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.093 3.907 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.057 0.943 41 H 0.385 0.615 42 H 0.256 0.744 43 H 0.073 0.927 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.388 -17.398 10.149 20.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.125 4.125 3 H 0.132 0.868 4 C -0.721 4.721 5 S 2.600 3.400 6 C -0.807 4.807 7 O -0.928 6.928 8 O -0.931 6.931 9 C 0.318 3.682 10 O -0.428 6.428 11 N -0.333 5.333 12 C -0.009 4.009 13 C -0.171 4.171 14 C -0.179 4.179 15 C 0.055 3.945 16 H 0.071 0.929 17 N -0.362 5.362 18 C -0.373 4.373 19 H 0.089 0.911 20 C -0.206 4.206 21 N -0.579 5.579 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.031 4.031 27 H 0.108 0.892 28 H 0.094 0.906 29 H 0.091 0.909 30 H 0.160 0.840 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.105 0.895 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.219 0.781 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.207 -17.081 10.279 19.936 hybrid contribution 0.894 0.192 -0.253 0.949 sum 1.101 -16.889 10.026 19.671 Atomic orbital electron populations 1.22198 0.91063 1.04480 1.04996 1.21037 0.98862 1.01030 0.91523 0.86799 1.30246 1.12316 1.14509 1.15045 1.07961 0.76285 0.77262 0.78480 1.30275 1.13973 1.16706 1.19704 1.93651 1.76165 1.37279 1.85708 1.93599 1.27205 1.86810 1.85445 1.20145 0.77423 0.86717 0.83929 1.90636 1.51152 1.15911 1.85139 1.48090 1.60601 1.14065 1.10543 1.21627 0.95830 0.96853 0.86634 1.21933 0.97561 0.96840 1.00799 1.22338 1.01174 0.93902 1.00442 1.20548 0.94055 0.85554 0.94322 0.92933 1.42301 1.08608 0.99860 1.85416 1.19192 0.90691 0.86045 1.41344 0.91099 1.24733 0.96060 0.97415 1.02349 1.69647 1.12616 1.20633 1.54983 0.86196 0.80050 0.82376 0.77597 1.21731 1.21701 1.20674 1.22318 0.98400 0.79453 1.02899 0.89194 0.90596 0.90940 0.84034 0.84630 0.85300 0.85227 0.85304 0.89515 0.91592 0.91939 0.91325 0.91501 0.92436 0.78144 0.93400 0.90892 0.89335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 8.28 37.16 0.31 -1.62 16 2 C -0.10 -1.24 1.86 -91.77 -0.17 -1.41 16 3 H 0.11 1.42 6.53 -51.93 -0.34 1.08 16 4 C -0.59 -5.30 4.69 37.16 0.17 -5.12 16 5 S 2.42 21.57 5.15 -107.50 -0.55 21.02 16 6 C -0.66 -3.23 10.62 101.05 1.07 -2.16 16 7 O -0.93 -12.48 18.10 -57.83 -1.05 -13.53 16 8 O -0.93 -10.88 15.62 -57.83 -0.90 -11.78 16 9 C 0.53 7.60 6.80 -10.99 -0.07 7.52 16 10 O -0.55 -8.92 15.62 5.56 0.09 -8.83 16 11 N -0.60 -8.58 2.97 -172.78 -0.51 -9.09 16 12 C 0.11 1.49 6.42 -3.71 -0.02 1.46 16 13 C -0.13 -1.78 6.08 -26.61 -0.16 -1.94 16 14 C -0.14 -2.30 5.49 -26.53 -0.15 -2.44 16 15 C 0.17 3.09 2.94 -67.65 -0.20 2.89 16 16 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 17 N -0.72 -17.02 5.13 -53.15 -0.27 -17.29 16 18 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 19 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -27.31 13.06 55.49 0.72 -26.58 16 22 Si 0.91 22.02 29.55 -169.99 -5.02 17.00 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 C 0.09 1.43 5.22 -3.71 -0.02 1.41 16 27 H 0.09 1.03 5.95 -51.93 -0.31 0.72 16 28 H 0.08 0.84 7.37 -51.93 -0.38 0.46 16 29 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 30 H 0.14 1.03 8.03 -51.92 -0.42 0.61 16 31 H 0.14 1.03 8.14 -51.92 -0.42 0.60 16 32 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.13 0.57 8.14 -51.92 -0.42 0.14 16 34 H 0.13 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 1.15 7.03 -51.93 -0.37 0.79 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.38 9.58 7.80 -40.82 -0.32 9.26 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.09 1.32 5.15 -51.93 -0.27 1.05 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -35.81 361.99 -8.55 -44.35 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -7.01 Total: 7.66 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 0.52 Total: -8.38 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.06 Total: -52.97 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -1.86 Total: -34.14 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 16 Polarization: 21.57 SS G_CDS: -0.55 Total: 21.02 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.81 -8.55 -44.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001211301628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.868 kcal (2) G-P(sol) polarization free energy of solvation -35.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds