Wall clock time and date at job start Fri Apr 10 2020 18:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99602 * 2 1 4 4 C 1.53001 * 109.46805 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47241 * 179.97438 * 4 3 2 6 6 N 1.46895 * 109.47351 * 179.97438 * 5 4 3 7 7 C 1.48562 * 111.00142 * 174.70363 * 6 5 4 8 8 C 1.54377 * 104.59407 * 159.03785 * 7 6 5 9 9 H 1.09003 * 110.32570 * 95.04509 * 8 7 6 10 10 N 1.46503 * 110.32598 * 217.25227 * 8 7 6 11 11 C 1.34773 * 120.00218 * 270.63728 * 10 8 7 12 12 O 1.21284 * 119.99582 * 0.02562 * 11 10 8 13 13 C 1.50699 * 120.00164 * 179.97438 * 11 10 8 14 14 S 1.81001 * 109.46994 * 180.02562 * 13 11 10 15 15 C 1.76204 * 99.99760 * 180.02562 * 14 13 11 16 16 H 1.07995 * 119.99865 * 359.97438 * 15 14 13 17 17 C 1.38804 * 119.99855 * 180.02562 * 15 14 13 18 18 N 1.31635 * 119.99787 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 119.99878 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47327 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47163 * 120.00155 * 19 17 15 22 22 H 1.48503 * 109.47166 * 239.99572 * 19 17 15 23 23 C 1.54266 * 105.06190 * 336.14868 * 8 7 6 24 24 H 1.09005 * 110.32324 * 118.99736 * 23 8 7 25 25 O 1.42898 * 110.32552 * 241.10371 * 23 8 7 26 26 C 1.48562 * 110.99842 * 290.12526 * 6 5 4 27 27 H 1.09005 * 109.46936 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47538 * 299.99888 * 1 2 3 29 29 H 1.08995 * 109.47502 * 60.00046 * 1 2 3 30 30 H 1.08998 * 109.47785 * 59.99706 * 3 2 1 31 31 H 1.08998 * 109.47063 * 299.99437 * 3 2 1 32 32 H 1.08999 * 109.47371 * 59.99764 * 4 3 2 33 33 H 1.09002 * 109.47101 * 299.99299 * 4 3 2 34 34 H 1.08998 * 109.47414 * 59.99407 * 5 4 3 35 35 H 1.09002 * 109.46654 * 299.99760 * 5 4 3 36 36 H 1.09000 * 110.41111 * 40.26361 * 7 6 5 37 37 H 1.08989 * 110.41482 * 277.81625 * 7 6 5 38 38 H 0.97000 * 119.99570 * 90.64120 * 10 8 7 39 39 H 1.09003 * 109.46729 * 299.99791 * 13 11 10 40 40 H 1.08992 * 109.47410 * 60.00197 * 13 11 10 41 41 H 0.96996 * 119.99705 * 179.97438 * 18 17 15 42 42 H 0.96698 * 114.00113 * 180.02562 * 25 23 8 43 43 H 1.08998 * 110.41528 * 82.17831 * 26 6 5 44 44 H 1.08997 * 110.50874 * 319.78619 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 -0.0013 6 7 5.6221 2.4665 -0.0013 7 6 6.2618 3.8011 -0.1299 8 6 7.6923 3.6009 0.4149 9 1 8.3832 3.3939 -0.4023 10 7 8.1238 4.7865 1.1595 11 6 8.7484 5.7943 0.5188 12 8 8.9528 5.7199 -0.6744 13 6 9.1918 7.0141 1.2846 14 16 9.9920 8.1788 0.1535 15 6 10.3982 9.4703 1.2811 16 1 10.1404 9.3761 2.3256 17 6 11.0484 10.6093 0.8268 18 7 11.3621 10.7244 -0.4465 19 14 11.4784 11.9788 2.0221 20 1 11.0205 11.6081 3.3852 21 1 12.9492 12.1835 2.0320 22 1 10.8069 13.2340 1.5991 23 6 7.5958 2.3827 1.3564 24 1 8.2407 1.5784 1.0022 25 8 7.9546 2.7552 2.6885 26 6 6.1151 1.9493 1.3012 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.6885 1.8465 0.8899 31 1 1.6885 1.8463 -0.8900 32 1 3.8567 0.6439 -0.8908 33 1 3.8574 0.6437 0.8892 34 1 3.8364 3.1236 0.8886 35 1 3.8356 3.1230 -0.8913 36 1 5.7268 4.5384 0.4686 37 1 6.2928 4.1087 -1.1751 38 1 7.9600 4.8461 2.1137 39 1 8.3249 7.4904 1.7426 40 1 9.8970 6.7190 2.0615 41 1 11.8162 11.5205 -0.7641 42 1 7.9126 2.0285 3.3250 43 1 6.0356 0.8627 1.3335 44 1 5.5576 2.3952 2.1249 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001219216294.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:59 Heat of formation + Delta-G solvation = -154.412678 kcal Electronic energy + Delta-G solvation = -24008.256100 eV Core-core repulsion = 20278.825490 eV Total energy + Delta-G solvation = -3729.430610 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.26834 -39.81487 -38.88868 -37.18355 -35.49190 -34.58646 -33.76193 -31.39232 -29.86608 -28.87302 -27.70298 -27.44834 -25.44199 -23.11689 -22.38123 -21.78556 -21.36936 -19.87589 -18.62196 -18.01858 -17.41929 -17.22539 -17.03097 -16.88574 -16.71598 -16.46825 -15.96134 -15.84370 -15.77562 -15.19510 -14.89238 -14.73665 -14.52935 -14.28293 -13.95334 -13.69069 -13.20374 -13.15528 -13.01725 -12.91349 -12.77583 -12.63396 -12.57976 -12.30003 -12.12182 -12.00427 -11.72849 -11.66879 -11.15959 -11.02253 -10.97124 -10.63584 -10.28021 -10.13746 -9.61956 -8.66802 -8.35011 -6.13006 1.25947 1.41315 1.46042 1.57747 1.58839 2.12521 2.27188 2.63283 2.99102 3.03826 3.25130 3.34381 3.48327 3.61118 3.94586 3.98786 4.05358 4.16952 4.19721 4.25179 4.28735 4.37322 4.42184 4.49893 4.50188 4.52191 4.54250 4.62701 4.68108 4.84472 4.84926 4.87425 4.92330 5.09900 5.18707 5.36808 5.42039 5.69684 5.88331 6.19986 6.21787 6.52580 6.85357 7.06322 7.26409 8.74531 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.024931 B = 0.002055 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.840914 B =13625.250743 C =14022.156684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.418 6.418 3 C 0.060 3.940 4 C -0.104 4.104 5 C 0.050 3.950 6 N -0.510 5.510 7 C 0.028 3.972 8 C 0.141 3.859 9 H 0.084 0.916 10 N -0.695 5.695 11 C 0.534 3.466 12 O -0.564 6.564 13 C -0.128 4.128 14 S -0.147 6.147 15 C -0.547 4.547 16 H 0.082 0.918 17 C 0.013 3.987 18 N -0.911 5.911 19 Si 1.000 3.000 20 H -0.257 1.257 21 H -0.273 1.273 22 H -0.273 1.273 23 C 0.106 3.894 24 H 0.090 0.910 25 O -0.570 6.570 26 C 0.006 3.994 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.419 0.581 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.271 0.729 42 H 0.405 0.595 43 H 0.107 0.893 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.531 -22.900 8.319 31.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.016 4.016 4 C -0.142 4.142 5 C -0.078 4.078 6 N -0.235 5.235 7 C -0.101 4.101 8 C 0.035 3.965 9 H 0.102 0.898 10 N -0.349 5.349 11 C 0.320 3.680 12 O -0.442 6.442 13 C -0.280 4.280 14 S 0.080 5.920 15 C -0.695 4.695 16 H 0.100 0.900 17 C -0.191 4.191 18 N -0.547 5.547 19 Si 0.821 3.179 20 H -0.181 1.181 21 H -0.199 1.199 22 H -0.199 1.199 23 C 0.045 3.955 24 H 0.108 0.892 25 O -0.379 6.379 26 C -0.122 4.122 27 H 0.114 0.886 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.096 0.904 36 H 0.070 0.930 37 H 0.093 0.907 38 H 0.257 0.743 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.257 0.743 43 H 0.125 0.875 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.809 -22.902 5.521 30.145 hybrid contribution -0.450 1.328 2.709 3.051 sum -19.259 -21.573 8.231 30.068 Atomic orbital electron populations 1.22917 0.79534 1.03799 1.00820 1.87823 1.21434 1.28864 1.95617 1.22525 0.93745 0.84401 1.00976 1.21324 0.92706 0.96486 1.03655 1.22167 0.86743 0.97076 1.01851 1.65317 1.07057 1.19767 1.31326 1.23429 0.93790 0.91275 1.01629 1.21783 0.95526 0.84537 0.94646 0.89766 1.45524 1.59199 1.17026 1.13196 1.20095 0.76704 0.84001 0.87179 1.90687 1.56493 1.80355 1.16696 1.23351 1.04724 0.96984 1.02912 1.85541 1.74806 1.16443 1.15239 1.23249 1.44729 1.04889 0.96640 0.89988 1.26135 0.94543 1.00763 0.97699 1.70190 1.39303 1.29362 1.15889 0.84891 0.78075 0.76813 0.78072 1.18098 1.19864 1.19869 1.22665 0.95107 0.94636 0.83071 0.89208 1.86334 1.91186 1.42032 1.18387 1.23952 0.94763 1.02478 0.91039 0.88603 0.93166 0.93329 0.92440 0.92660 0.91119 0.90884 0.93536 0.90384 0.93001 0.90661 0.74271 0.87428 0.87494 0.91966 0.74337 0.87507 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.67 10.70 -148.98 -1.59 -8.27 16 3 C 0.06 0.76 5.94 71.98 0.43 1.19 16 4 C -0.10 -1.37 5.64 30.60 0.17 -1.20 16 5 C 0.05 0.72 4.81 86.30 0.42 1.13 16 6 N -0.51 -8.86 5.37 -881.52 -4.73 -13.59 16 7 C 0.03 0.63 6.20 86.45 0.54 1.17 16 8 C 0.14 3.42 3.41 45.89 0.16 3.58 16 9 H 0.08 2.46 7.56 -2.39 -0.02 2.44 16 10 N -0.69 -19.29 4.85 -438.28 -2.13 -21.42 16 11 C 0.53 20.55 7.85 87.66 0.69 21.24 16 12 O -0.56 -26.65 15.51 -3.04 -0.05 -26.70 16 13 C -0.13 -5.29 6.16 71.24 0.44 -4.85 16 14 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 15 C -0.55 -31.70 9.50 67.96 0.65 -31.05 16 16 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 17 C 0.01 0.77 5.49 84.86 0.47 1.23 16 18 N -0.91 -56.39 13.22 21.65 0.29 -56.10 16 19 Si 1.00 43.99 29.55 68.60 2.03 46.01 16 20 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 C 0.11 1.64 4.42 31.49 0.14 1.78 16 24 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 25 O -0.57 -7.79 11.53 -148.98 -1.72 -9.51 16 26 C 0.01 0.07 5.48 86.45 0.47 0.55 16 27 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 28 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 0.92 7.25 -2.39 -0.02 0.90 16 34 H 0.05 0.62 7.88 -2.39 -0.02 0.60 16 35 H 0.08 1.17 8.13 -2.39 -0.02 1.15 16 36 H 0.05 1.18 7.91 -2.39 -0.02 1.16 16 37 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.42 9.81 7.26 -92.71 -0.67 9.14 16 39 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 40 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 41 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 42 H 0.40 1.68 9.12 -74.06 -0.68 1.01 16 43 H 0.11 1.01 7.76 -2.39 -0.02 0.99 16 44 H 0.06 0.77 7.76 -2.39 -0.02 0.75 16 Total: -1.00 -78.77 376.71 -3.61 -82.37 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -0.35 Total: 20.43 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: 5.81 Total: -3.74 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -6.57 Total: -91.12 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -3.36 Total: -44.47 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.01 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -78.77 -3.61 -82.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219216294.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.041 kcal (2) G-P(sol) polarization free energy of solvation -78.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds