Wall clock time and date at job start Fri Apr 10 2020 18:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46985 * 2 1 4 4 C 1.50704 * 109.46929 * 240.00373 * 2 1 3 5 5 O 1.21284 * 119.99731 * 265.00411 * 4 2 1 6 6 N 1.34775 * 119.99946 * 84.99502 * 4 2 1 7 7 C 1.46501 * 119.99550 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.47077 * 180.02562 * 7 6 4 9 9 C 1.53350 * 109.41355 * 295.12943 * 8 7 6 10 10 C 1.53194 * 109.14857 * 178.67407 * 9 8 7 11 11 N 1.46934 * 108.89214 * 54.57312 * 10 9 8 12 12 C 1.36935 * 120.62776 * 126.34278 * 11 10 9 13 13 H 1.08003 * 120.00334 * 331.82288 * 12 11 10 14 14 C 1.38816 * 120.00109 * 151.82327 * 12 11 10 15 15 N 1.31624 * 119.99356 * 343.07479 * 14 12 11 16 16 Si 1.86793 * 120.00395 * 163.07501 * 14 12 11 17 17 H 1.48500 * 109.47341 * 59.99642 * 16 14 12 18 18 H 1.48496 * 109.47062 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46651 * 299.99824 * 16 14 12 20 20 C 1.46917 * 118.73910 * 306.32295 * 11 10 9 21 21 C 1.53038 * 109.46329 * 174.99754 * 8 7 6 22 22 S 1.81398 * 109.47438 * 120.00248 * 2 1 3 23 23 C 1.81397 * 101.92223 * 304.99804 * 22 2 1 24 24 O 1.42099 * 108.57897 * 59.48414 * 22 2 1 25 25 O 1.42100 * 108.58055 * 190.50757 * 22 2 1 26 26 H 1.08994 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46700 * 299.99539 * 1 2 3 28 28 H 1.08999 * 109.47360 * 59.99758 * 1 2 3 29 29 H 0.96993 * 120.00098 * 0.02562 * 6 4 2 30 30 H 1.08999 * 109.47676 * 60.00357 * 7 6 4 31 31 H 1.08999 * 109.47116 * 299.99867 * 7 6 4 32 32 H 1.09005 * 109.45975 * 55.02482 * 8 7 6 33 33 H 1.08992 * 109.69166 * 58.70660 * 9 8 7 34 34 H 1.09002 * 109.47268 * 298.50861 * 9 8 7 35 35 H 1.08993 * 109.58759 * 294.71698 * 10 9 8 36 36 H 1.09001 * 109.58865 * 174.43210 * 10 9 8 37 37 H 0.96997 * 119.99488 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.58812 * 173.39821 * 20 11 10 39 39 H 1.09004 * 109.58911 * 293.67958 * 20 11 10 40 40 H 1.09007 * 109.49142 * 61.43184 * 21 8 7 41 41 H 1.08998 * 109.52324 * 301.35642 * 21 8 7 42 42 H 1.09004 * 109.46765 * 59.99895 * 23 22 2 43 43 H 1.08992 * 109.47434 * 179.97438 * 23 22 2 44 44 H 1.09003 * 109.47405 * 300.00298 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.3207 -1.8872 -1.1761 6 7 2.1609 -0.0379 -2.3915 7 6 2.6487 -0.7287 -3.5878 8 6 2.7008 0.2546 -4.7589 9 6 1.2785 0.7136 -5.1027 10 6 1.3406 1.7227 -6.2537 11 7 2.0698 1.1187 -7.3772 12 6 1.5123 1.0733 -8.6271 13 1 0.4385 1.0409 -8.7386 14 6 2.3271 1.0691 -9.7509 15 7 3.5866 1.4385 -9.6518 16 14 1.6363 0.5392 -11.4035 17 1 0.5115 1.4328 -11.7794 18 1 2.7014 0.6225 -12.4349 19 1 1.1471 -0.8598 -11.3098 20 6 3.4087 0.5647 -7.1342 21 6 3.3266 -0.4329 -5.9745 22 16 2.1348 -0.8552 1.4810 23 6 1.3000 0.0576 2.8079 24 8 1.6409 -2.1875 1.4679 25 8 3.5343 -0.6351 1.5912 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.9305 0.9032 -2.4349 30 1 1.9758 -1.5505 -3.8327 31 1 3.6478 -1.1212 -3.3987 32 1 3.3033 1.1193 -4.4805 33 1 0.8235 1.1836 -4.2310 34 1 0.6821 -0.1471 -5.4054 35 1 1.8592 2.6226 -5.9231 36 1 0.3295 1.9790 -6.5699 37 1 4.1559 1.4358 -10.4372 38 1 3.7614 0.0546 -8.0307 39 1 4.0966 1.3704 -6.8778 40 1 2.7109 -1.2829 -6.2687 41 1 4.3284 -0.7796 -5.7212 42 1 0.2204 -0.0211 2.6794 43 1 1.5824 -0.3642 3.7724 44 1 1.5950 1.1062 2.7690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223616891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:29 Heat of formation + Delta-G solvation = -91.146870 kcal Electronic energy + Delta-G solvation = -25229.196232 eV Core-core repulsion = 21502.509033 eV Total energy + Delta-G solvation = -3726.687199 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.13768 -37.93025 -37.29021 -36.27419 -35.12328 -34.09748 -32.78322 -30.82421 -29.94372 -29.72867 -27.09629 -25.29342 -23.89901 -22.32051 -21.24582 -20.87678 -19.26426 -19.01531 -17.87786 -17.43081 -16.76094 -16.47008 -16.00789 -15.53107 -15.45058 -14.84456 -14.55097 -14.10048 -13.75125 -13.73037 -13.68708 -13.55719 -13.47776 -13.21516 -12.79957 -12.51095 -12.42881 -12.36319 -12.30584 -12.23581 -11.92107 -11.39384 -11.39024 -11.02173 -10.96070 -10.74266 -10.56938 -10.36780 -10.26842 -10.22766 -9.93773 -9.60843 -9.49671 -9.18511 -8.49192 -6.70399 -5.81769 -3.24487 -0.48626 2.21422 2.33731 2.73882 3.36589 3.42782 3.43959 3.46905 3.60121 4.07586 4.11533 4.31350 4.47064 4.47585 4.58325 4.84231 5.02122 5.03057 5.14799 5.17534 5.30997 5.37713 5.48862 5.54971 5.78086 5.85698 5.96357 6.05506 6.25396 6.26809 6.37742 6.55084 6.63018 6.70386 6.75529 6.91760 7.19765 7.34273 7.62818 7.76523 7.86843 8.42604 9.18652 9.82006 10.38529 11.26800 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.038568 B = 0.002405 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.809137 B =11637.947888 C =11837.890973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.617 4.617 3 H 0.155 0.845 4 C 0.536 3.464 5 O -0.525 6.525 6 N -0.709 5.709 7 C 0.119 3.881 8 C -0.091 4.091 9 C -0.128 4.128 10 C 0.145 3.855 11 N -0.592 5.592 12 C -0.254 4.254 13 H 0.064 0.936 14 C 0.003 3.997 15 N -0.903 5.903 16 Si 0.903 3.097 17 H -0.283 1.283 18 H -0.290 1.290 19 H -0.284 1.284 20 C 0.171 3.829 21 C -0.133 4.133 22 S 2.447 3.553 23 C -0.662 4.662 24 O -0.909 6.909 25 O -0.931 6.931 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.403 0.597 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.016 0.984 36 H 0.052 0.948 37 H 0.255 0.745 38 H 0.088 0.912 39 H 0.018 0.982 40 H 0.058 0.942 41 H 0.052 0.948 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.993 1.178 23.693 24.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.725 4.725 3 H 0.172 0.828 4 C 0.319 3.681 5 O -0.402 6.402 6 N -0.360 5.360 7 C -0.004 4.004 8 C -0.110 4.110 9 C -0.167 4.167 10 C 0.019 3.981 11 N -0.315 5.315 12 C -0.384 4.384 13 H 0.082 0.918 14 C -0.196 4.196 15 N -0.547 5.547 16 Si 0.732 3.268 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.210 1.210 20 C 0.046 3.954 21 C -0.173 4.173 22 S 2.623 3.377 23 C -0.811 4.811 24 O -0.906 6.906 25 O -0.928 6.928 26 H 0.103 0.897 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.238 0.762 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.036 0.964 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.081 -0.347 23.586 24.129 hybrid contribution -0.941 1.146 -0.972 1.773 sum -6.022 0.799 22.613 23.415 Atomic orbital electron populations 1.21644 0.87557 1.05265 1.05189 1.30697 1.09025 1.15446 1.17346 0.82756 1.19129 0.78343 0.86801 0.83834 1.90894 1.49756 1.14788 1.84730 1.45978 1.66149 1.14293 1.09562 1.21744 0.99768 0.95842 0.83073 1.21388 0.98040 0.97565 0.93962 1.22145 0.95271 1.00705 0.98596 1.20876 0.96222 0.92721 0.88290 1.44035 1.16319 1.66280 1.04847 1.19132 0.91403 1.45441 0.82414 0.91809 1.25049 0.96449 1.00247 0.97858 1.70018 1.06213 1.49379 1.29126 0.86367 0.77945 0.78867 0.83571 1.20899 1.21610 1.21002 1.20766 0.86302 0.93071 0.95302 1.22178 0.98902 1.00175 0.96019 1.07519 0.76121 0.76654 0.77357 1.30405 1.15284 1.15826 1.19591 1.93610 1.81537 1.30532 1.84892 1.93604 1.27607 1.86398 1.85160 0.89665 0.90042 0.89555 0.76152 0.91078 0.91212 0.91171 0.93547 0.92080 0.96648 0.92910 0.93538 0.89364 0.96391 0.92303 0.92916 0.84935 0.84856 0.85154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 8.88 37.16 0.33 -0.36 16 2 C -0.62 -4.49 3.15 -27.88 -0.09 -4.58 16 3 H 0.15 0.51 8.14 -51.93 -0.42 0.09 16 4 C 0.54 6.64 6.95 -10.98 -0.08 6.57 16 5 O -0.52 -8.89 15.48 -9.37 -0.15 -9.03 16 6 N -0.71 -8.03 5.27 -60.29 -0.32 -8.35 16 7 C 0.12 1.62 5.07 -4.04 -0.02 1.60 16 8 C -0.09 -1.36 2.19 -90.42 -0.20 -1.56 16 9 C -0.13 -1.98 5.27 -26.45 -0.14 -2.12 16 10 C 0.15 2.85 6.50 -3.71 -0.02 2.83 16 11 N -0.59 -14.36 2.99 -172.32 -0.52 -14.87 16 12 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 13 H 0.06 1.69 7.89 -52.48 -0.41 1.28 16 14 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 15 N -0.90 -25.88 11.20 55.49 0.62 -25.26 16 16 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.17 3.95 5.30 -3.72 -0.02 3.93 16 21 C -0.13 -2.40 5.36 -26.61 -0.14 -2.55 16 22 S 2.45 21.70 4.52 -107.50 -0.49 21.21 16 23 C -0.66 -2.14 10.01 101.05 1.01 -1.13 16 24 O -0.91 -11.99 17.21 -64.29 -1.11 -13.10 16 25 O -0.93 -11.87 18.10 -57.83 -1.05 -12.92 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.08 0.11 6.39 -51.93 -0.33 -0.23 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.40 3.44 7.65 -40.82 -0.31 3.13 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.05 0.57 7.16 -51.93 -0.37 0.20 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.05 1.03 7.93 -51.93 -0.41 0.61 16 37 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.09 2.31 6.06 -51.93 -0.31 1.99 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.13 0.15 6.77 -51.92 -0.35 -0.20 16 43 H 0.13 0.36 8.14 -51.93 -0.42 -0.07 16 44 H 0.13 0.13 8.14 -51.92 -0.42 -0.29 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -37.83 362.88 -9.29 -47.12 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -7.14 Total: -2.33 kcal Atomic # 6 Polarization: -4.79 SS G_CDS: 0.40 Total: -4.38 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: -0.21 Total: -48.49 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -2.30 Total: -35.05 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Atomic # 16 Polarization: 21.70 SS G_CDS: -0.49 Total: 21.21 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -37.83 -9.29 -47.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223616891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.028 kcal (2) G-P(sol) polarization free energy of solvation -37.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds