Wall clock time and date at job start Fri Apr 10 2020 18:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 109.46985 * 2 1 4 4 C 1.50704 * 109.46929 * 240.00373 * 2 1 3 5 5 O 1.21284 * 119.99731 * 265.00411 * 4 2 1 6 6 N 1.34775 * 119.99946 * 84.99502 * 4 2 1 7 7 C 1.46501 * 119.99550 * 180.02562 * 6 4 2 8 8 C 1.53006 * 109.47077 * 180.02562 * 7 6 4 9 9 C 1.53350 * 109.41355 * 295.12943 * 8 7 6 10 10 C 1.53194 * 109.14857 * 178.67407 * 9 8 7 11 11 N 1.46934 * 108.89214 * 54.57312 * 10 9 8 12 12 C 1.36935 * 120.62776 * 126.34278 * 11 10 9 13 13 H 1.08003 * 120.00334 * 331.82288 * 12 11 10 14 14 C 1.38816 * 120.00109 * 151.82327 * 12 11 10 15 15 N 1.31624 * 119.99356 * 343.07479 * 14 12 11 16 16 Si 1.86793 * 120.00395 * 163.07501 * 14 12 11 17 17 H 1.48500 * 109.47341 * 59.99642 * 16 14 12 18 18 H 1.48496 * 109.47062 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.46651 * 299.99824 * 16 14 12 20 20 C 1.46917 * 118.73910 * 306.32295 * 11 10 9 21 21 C 1.53038 * 109.46329 * 174.99754 * 8 7 6 22 22 S 1.81398 * 109.47438 * 120.00248 * 2 1 3 23 23 C 1.81397 * 101.92223 * 304.99804 * 22 2 1 24 24 O 1.42099 * 108.57897 * 59.48414 * 22 2 1 25 25 O 1.42100 * 108.58055 * 190.50757 * 22 2 1 26 26 H 1.08994 * 109.46985 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46700 * 299.99539 * 1 2 3 28 28 H 1.08999 * 109.47360 * 59.99758 * 1 2 3 29 29 H 0.96993 * 120.00098 * 0.02562 * 6 4 2 30 30 H 1.08999 * 109.47676 * 60.00357 * 7 6 4 31 31 H 1.08999 * 109.47116 * 299.99867 * 7 6 4 32 32 H 1.09005 * 109.45975 * 55.02482 * 8 7 6 33 33 H 1.08992 * 109.69166 * 58.70660 * 9 8 7 34 34 H 1.09002 * 109.47268 * 298.50861 * 9 8 7 35 35 H 1.08993 * 109.58759 * 294.71698 * 10 9 8 36 36 H 1.09001 * 109.58865 * 174.43210 * 10 9 8 37 37 H 0.96997 * 119.99488 * 180.02562 * 15 14 12 38 38 H 1.09003 * 109.58812 * 173.39821 * 20 11 10 39 39 H 1.09004 * 109.58911 * 293.67958 * 20 11 10 40 40 H 1.09007 * 109.49142 * 61.43184 * 21 8 7 41 41 H 1.08998 * 109.52324 * 301.35642 * 21 8 7 42 42 H 1.09004 * 109.46765 * 59.99895 * 23 22 2 43 43 H 1.08992 * 109.47434 * 179.97438 * 23 22 2 44 44 H 1.09003 * 109.47405 * 300.00298 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.3207 -1.8872 -1.1761 6 7 2.1609 -0.0379 -2.3915 7 6 2.6487 -0.7287 -3.5878 8 6 2.7008 0.2546 -4.7589 9 6 1.2785 0.7136 -5.1027 10 6 1.3406 1.7227 -6.2537 11 7 2.0698 1.1187 -7.3772 12 6 1.5123 1.0733 -8.6271 13 1 0.4385 1.0409 -8.7386 14 6 2.3271 1.0691 -9.7509 15 7 3.5866 1.4385 -9.6518 16 14 1.6363 0.5392 -11.4035 17 1 0.5115 1.4328 -11.7794 18 1 2.7014 0.6225 -12.4349 19 1 1.1471 -0.8598 -11.3098 20 6 3.4087 0.5647 -7.1342 21 6 3.3266 -0.4329 -5.9745 22 16 2.1348 -0.8552 1.4810 23 6 1.3000 0.0576 2.8079 24 8 1.6409 -2.1875 1.4679 25 8 3.5343 -0.6351 1.5912 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.9305 0.9032 -2.4349 30 1 1.9758 -1.5505 -3.8327 31 1 3.6478 -1.1212 -3.3987 32 1 3.3033 1.1193 -4.4805 33 1 0.8235 1.1836 -4.2310 34 1 0.6821 -0.1471 -5.4054 35 1 1.8592 2.6226 -5.9231 36 1 0.3295 1.9790 -6.5699 37 1 4.1559 1.4358 -10.4372 38 1 3.7614 0.0546 -8.0307 39 1 4.0966 1.3704 -6.8778 40 1 2.7109 -1.2829 -6.2687 41 1 4.3284 -0.7796 -5.7212 42 1 0.2204 -0.0211 2.6794 43 1 1.5824 -0.3642 3.7724 44 1 1.5950 1.1062 2.7690 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223616891.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:25 Heat of formation + Delta-G solvation = -121.371130 kcal Electronic energy + Delta-G solvation = -25230.506854 eV Core-core repulsion = 21502.509033 eV Total energy + Delta-G solvation = -3727.997821 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 2.99 seconds Orbital eigenvalues (eV) -41.13964 -39.40627 -38.04598 -37.02911 -36.51003 -34.92219 -34.18755 -32.46806 -31.40910 -30.24513 -28.51915 -26.28379 -25.27127 -23.84553 -22.74139 -21.88791 -20.73407 -19.76597 -18.86149 -18.50517 -18.13760 -17.14238 -16.88382 -16.80874 -16.39652 -16.31322 -15.70354 -15.41578 -15.31356 -14.93116 -14.76313 -14.21442 -14.09581 -14.02545 -13.93424 -13.84157 -13.50613 -13.19088 -13.12346 -13.04736 -13.00327 -12.89882 -12.80354 -12.56094 -12.29452 -12.04358 -11.96310 -11.85849 -11.66110 -11.50630 -11.34400 -11.13156 -11.01823 -10.53127 -10.23903 -8.67191 -7.87887 -5.32691 -1.05635 1.33424 1.45616 1.48618 1.54803 1.77237 1.91351 2.50897 2.86580 3.05582 3.26746 3.41077 3.69684 3.70406 3.81051 3.90662 4.00769 4.06227 4.13618 4.28792 4.47494 4.52813 4.61812 4.66720 4.67838 4.70792 4.77900 4.91756 4.99351 5.01023 5.11384 5.20158 5.24580 5.26967 5.30474 5.41972 5.54667 5.65346 5.77869 6.30803 6.39704 7.00223 7.15468 7.88156 8.38472 9.18178 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.038568 B = 0.002405 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.809137 B =11637.947888 C =11837.890973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.601 4.601 3 H 0.202 0.798 4 C 0.524 3.476 5 O -0.580 6.580 6 N -0.698 5.698 7 C 0.129 3.871 8 C -0.078 4.078 9 C -0.114 4.114 10 C 0.140 3.860 11 N -0.612 5.612 12 C -0.263 4.263 13 H 0.065 0.935 14 C -0.051 4.051 15 N -0.935 5.935 16 Si 0.964 3.036 17 H -0.274 1.274 18 H -0.295 1.295 19 H -0.281 1.281 20 C 0.178 3.822 21 C -0.124 4.124 22 S 2.420 3.580 23 C -0.625 4.625 24 O -0.972 6.972 25 O -0.988 6.988 26 H 0.063 0.937 27 H 0.129 0.871 28 H 0.096 0.904 29 H 0.421 0.579 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.020 0.980 36 H 0.052 0.948 37 H 0.249 0.751 38 H 0.050 0.950 39 H 0.000 1.000 40 H 0.049 0.951 41 H 0.067 0.933 42 H 0.165 0.835 43 H 0.144 0.856 44 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.327 3.281 26.240 27.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.711 4.711 3 H 0.220 0.780 4 C 0.309 3.691 5 O -0.461 6.461 6 N -0.350 5.350 7 C 0.005 3.995 8 C -0.097 4.097 9 C -0.153 4.153 10 C 0.014 3.986 11 N -0.336 5.336 12 C -0.393 4.393 13 H 0.083 0.917 14 C -0.247 4.247 15 N -0.581 5.581 16 Si 0.793 3.207 17 H -0.199 1.199 18 H -0.221 1.221 19 H -0.207 1.207 20 C 0.052 3.948 21 C -0.163 4.163 22 S 2.604 3.396 23 C -0.779 4.779 24 O -0.969 6.969 25 O -0.985 6.985 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.115 0.885 29 H 0.259 0.741 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.068 0.932 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.018 0.982 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.183 0.817 43 H 0.163 0.837 44 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -7.417 1.754 26.135 27.224 hybrid contribution -0.280 0.589 -1.700 1.821 sum -7.697 2.344 24.435 25.725 Atomic orbital electron populations 1.21860 0.85300 1.04927 1.08162 1.30612 1.10632 1.16729 1.13138 0.78050 1.20022 0.77294 0.86452 0.85289 1.90878 1.51924 1.17514 1.85738 1.45818 1.65589 1.14967 1.08646 1.21400 0.99347 0.95217 0.83536 1.21213 0.97768 0.97775 0.92935 1.22005 0.95492 0.99340 0.98496 1.21081 0.95532 0.93807 0.88140 1.44324 1.16763 1.67179 1.05356 1.19472 0.91647 1.44322 0.83865 0.91698 1.25780 0.96841 1.00973 1.01084 1.70168 1.07359 1.51021 1.29551 0.85387 0.77232 0.78496 0.79626 1.19944 1.22100 1.20700 1.20551 0.85692 0.93087 0.95486 1.21985 1.00098 0.98623 0.95631 1.07796 0.75677 0.76808 0.79274 1.30115 1.16013 1.16258 1.15501 1.93537 1.81984 1.35217 1.86199 1.93534 1.31543 1.87123 1.86286 0.91759 0.85224 0.88468 0.74108 0.92202 0.91988 0.90105 0.89099 0.93180 0.96216 0.92924 0.94149 0.93197 0.98227 0.93237 0.91470 0.81723 0.83749 0.81447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 82. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.88 71.98 0.64 -0.18 16 2 C -0.60 -6.84 3.15 29.85 0.09 -6.74 16 3 H 0.20 0.24 8.14 -2.39 -0.02 0.22 16 4 C 0.52 12.31 6.95 87.66 0.61 12.92 16 5 O -0.58 -20.22 15.48 11.23 0.17 -20.04 16 6 N -0.70 -14.12 5.27 -463.04 -2.44 -16.56 16 7 C 0.13 3.38 5.07 86.38 0.44 3.81 16 8 C -0.08 -2.22 2.19 -10.66 -0.02 -2.24 16 9 C -0.11 -3.26 5.27 30.78 0.16 -3.10 16 10 C 0.14 5.28 6.50 86.36 0.56 5.84 16 11 N -0.61 -29.93 2.99 -699.10 -2.09 -32.03 16 12 C -0.26 -14.32 9.58 84.03 0.81 -13.52 16 13 H 0.07 3.44 7.89 -2.91 -0.02 3.42 16 14 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 15 N -0.93 -55.26 11.20 21.65 0.24 -55.02 16 16 Si 0.96 44.87 29.59 68.60 2.03 46.90 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 18 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 C 0.18 8.40 5.30 86.36 0.46 8.86 16 21 C -0.12 -4.48 5.36 30.67 0.16 -4.32 16 22 S 2.42 39.85 4.52 -56.49 -0.26 39.59 16 23 C -0.62 -0.79 10.01 113.37 1.14 0.35 16 24 O -0.97 -26.60 17.21 -121.20 -2.09 -28.68 16 25 O -0.99 -25.41 18.10 -127.37 -2.30 -27.71 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.13 -0.53 6.39 -2.38 -0.02 -0.54 16 28 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.42 5.39 7.65 -92.71 -0.71 4.69 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 33 H 0.09 1.81 7.16 -2.39 -0.02 1.80 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 1.97 7.93 -2.39 -0.02 1.95 16 37 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 38 H 0.05 2.73 6.06 -2.39 -0.01 2.71 16 39 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 40 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.16 -0.72 6.77 -2.39 -0.02 -0.74 16 43 H 0.14 0.11 8.14 -2.39 -0.02 0.09 16 44 H 0.17 -0.86 8.14 -2.39 -0.02 -0.88 16 Total: -1.00 -90.83 362.88 -0.99 -91.83 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: 0.28 Total: 2.49 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 5.46 Total: -0.77 kcal Atomic # 7 Polarization: -99.31 SS G_CDS: -4.29 Total: -103.61 kcal Atomic # 8 Polarization: -72.22 SS G_CDS: -4.22 Total: -76.44 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 39.85 SS G_CDS: -0.26 Total: 39.59 kcal Total: -90.83 -0.99 -91.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223616891.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.546 kcal (2) G-P(sol) polarization free energy of solvation -90.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.99 seconds