Wall clock time and date at job start Fri Apr 10 2020 18:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34776 * 120.00358 * 2 1 4 4 O 1.21283 * 119.99568 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00433 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.46404 * 300.00254 * 5 3 2 7 7 C 1.53002 * 109.46879 * 59.99854 * 5 3 2 8 8 C 1.52993 * 109.47383 * 180.02562 * 5 3 2 9 9 N 1.46500 * 109.47265 * 174.99734 * 8 5 3 10 10 C 1.46496 * 120.00255 * 275.00203 * 9 8 5 11 11 S 1.65600 * 119.99622 * 94.99743 * 9 8 5 12 12 O 1.42104 * 104.27570 * 206.07266 * 11 9 8 13 13 O 1.42095 * 104.28323 * 333.93043 * 11 9 8 14 14 C 1.81402 * 104.44874 * 90.00540 * 11 9 8 15 15 C 1.53000 * 109.47388 * 173.98155 * 14 11 9 16 16 C 1.50703 * 115.55035 * 65.19582 * 15 14 11 17 17 H 1.08006 * 120.00012 * 264.78971 * 16 15 14 18 18 C 1.37878 * 120.00058 * 84.78350 * 16 15 14 19 19 N 1.31512 * 120.00047 * 352.22917 * 18 16 15 20 20 Si 1.86800 * 120.00113 * 172.22568 * 18 16 15 21 21 H 1.48498 * 109.47351 * 59.99888 * 20 18 16 22 22 H 1.48505 * 109.47144 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46919 * 300.00156 * 20 18 16 24 24 C 1.52998 * 117.49848 * 279.52746 * 15 14 11 25 25 C 1.52998 * 117.50261 * 210.86623 * 15 14 11 26 26 H 1.08998 * 109.47339 * 59.99670 * 1 2 3 27 27 H 1.09000 * 109.47457 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47200 * 300.00142 * 1 2 3 29 29 H 0.97006 * 120.00073 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46872 * 180.02562 * 7 5 3 31 31 H 1.08998 * 109.47019 * 60.00268 * 7 5 3 32 32 H 1.08997 * 109.47442 * 299.99923 * 7 5 3 33 33 H 1.09005 * 109.47320 * 295.00077 * 8 5 3 34 34 H 1.08996 * 109.47255 * 54.99717 * 8 5 3 35 35 H 1.08993 * 109.47159 * 89.99532 * 10 9 8 36 36 H 1.08999 * 109.46964 * 210.00494 * 10 9 8 37 37 H 1.09004 * 109.46837 * 329.99641 * 10 9 8 38 38 H 1.09005 * 109.47096 * 293.97805 * 14 11 9 39 39 H 1.08998 * 109.47314 * 53.97971 * 14 11 9 40 40 H 0.97000 * 120.00258 * 185.02739 * 19 18 16 41 41 H 1.09003 * 117.49522 * 0.02562 * 24 15 14 42 42 H 1.08996 * 117.49764 * 145.01690 * 24 15 14 43 43 H 1.08996 * 117.50402 * 214.98163 * 25 15 14 44 44 H 1.09002 * 117.49369 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0095 0.6531 0.8892 7 6 4.1554 0.4462 -1.2502 8 6 4.1559 2.6096 0.0002 9 7 5.6160 2.6112 0.1201 10 6 6.2426 2.5374 1.4422 11 16 6.5582 2.6965 -1.2391 12 8 7.7784 2.0752 -0.8592 13 8 5.7441 2.1456 -2.2652 14 6 6.8054 4.4734 -1.5078 15 6 7.7918 4.6829 -2.6585 16 6 7.3205 4.2161 -4.0117 17 1 7.5925 3.2338 -4.3690 18 6 6.5420 5.0429 -4.7935 19 7 6.0834 6.1730 -4.3014 20 14 6.1388 4.5581 -6.5519 21 1 5.4048 3.2672 -6.5536 22 1 5.2941 5.6093 -7.1739 23 1 7.3976 4.4127 -7.3263 24 6 9.2830 4.5472 -2.3442 25 6 8.6792 5.9283 -2.6105 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.9500 -0.8401 -0.0004 30 1 5.2454 0.4458 -1.2504 31 1 3.7917 0.9602 -2.1399 32 1 3.7921 -0.5815 -1.2503 33 1 3.8672 3.0976 -0.9308 34 1 3.7217 3.1481 0.8425 35 1 6.4040 1.4933 1.7100 36 1 7.1993 3.0592 1.4205 37 1 5.5904 3.0050 2.1799 38 1 5.8520 4.9393 -1.7571 39 1 7.2046 4.9260 -0.6001 40 1 5.4767 6.7193 -4.8252 41 1 9.5613 4.3082 -1.3178 42 1 9.9232 4.1206 -3.1164 43 1 8.9224 6.4099 -3.5576 44 1 8.5599 6.5987 -1.7593 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414223526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:10 Heat of formation + Delta-G solvation = -81.125081 kcal Electronic energy + Delta-G solvation = -26423.977172 eV Core-core repulsion = 22697.724550 eV Total energy + Delta-G solvation = -3726.252622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.93751 -36.84478 -36.63724 -36.26723 -35.05231 -34.69566 -32.68491 -32.02474 -28.15259 -27.55644 -26.73741 -25.49881 -25.11344 -22.39777 -21.20632 -20.08493 -19.52336 -18.25391 -17.50606 -16.96741 -16.45891 -16.06129 -15.59715 -15.45897 -15.15644 -14.66758 -14.25311 -14.08580 -13.94152 -13.61072 -13.27079 -13.10994 -12.90839 -12.66174 -12.48729 -12.19693 -12.05152 -11.89011 -11.78255 -11.40339 -11.27690 -11.17409 -11.01930 -10.89462 -10.83443 -10.69893 -10.50808 -10.39904 -10.08080 -9.77580 -9.67367 -9.25198 -8.96255 -8.84543 -8.54557 -8.05744 -6.11665 -4.22590 1.04339 2.62039 3.06944 3.33752 3.36281 3.40919 3.42018 4.38848 4.58360 4.63687 4.82367 4.89921 4.94054 5.07820 5.15669 5.19249 5.21630 5.32989 5.39057 5.58112 5.61236 5.67516 5.71612 5.84168 5.90445 5.97151 6.02075 6.07316 6.22741 6.26922 6.31424 6.40922 6.62981 6.65909 6.72180 6.84357 7.00620 7.26577 7.33899 7.39746 7.82149 8.15257 8.21948 8.82387 9.48546 10.96055 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.004853 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.679639 B = 5768.105376 C = 6936.660658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.738 5.738 3 C 0.523 3.477 4 O -0.538 6.538 5 C -0.129 4.129 6 H 0.097 0.903 7 C -0.138 4.138 8 C 0.145 3.855 9 N -1.014 6.014 10 C 0.096 3.904 11 S 2.602 3.398 12 O -0.972 6.972 13 O -0.939 6.939 14 C -0.555 4.555 15 C 0.045 3.955 16 C -0.517 4.517 17 H 0.068 0.932 18 C 0.083 3.917 19 N -0.874 5.874 20 Si 0.890 3.110 21 H -0.270 1.270 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.209 4.209 25 C -0.142 4.142 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.402 0.598 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.052 0.948 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.134 0.866 39 H 0.096 0.904 40 H 0.264 0.736 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.265 -10.034 12.104 16.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.390 5.390 3 C 0.309 3.691 4 O -0.414 6.414 5 C -0.152 4.152 6 H 0.115 0.885 7 C -0.196 4.196 8 C 0.019 3.981 9 N -0.849 5.849 10 C -0.050 4.050 11 S 2.700 3.300 12 O -0.962 6.962 13 O -0.929 6.929 14 C -0.688 4.688 15 C 0.042 3.958 16 C -0.554 4.554 17 H 0.086 0.914 18 C -0.122 4.122 19 N -0.509 5.509 20 Si 0.717 3.283 21 H -0.195 1.195 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.246 4.246 25 C -0.181 4.181 26 H 0.078 0.922 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.236 0.764 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.152 0.848 39 H 0.114 0.886 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.498 -9.828 11.593 16.529 hybrid contribution -0.293 0.125 -0.584 0.665 sum -6.791 -9.703 11.009 16.170 Atomic orbital electron populations 1.21515 0.79850 1.01976 1.02340 1.45822 1.07624 1.08938 1.76641 1.20674 0.89994 0.83477 0.74934 1.90709 1.70548 1.31224 1.48907 1.21758 0.91043 1.00533 1.01902 0.88472 1.21954 1.02639 0.98470 0.96520 1.21004 0.78695 0.94020 1.04415 1.57931 1.15447 1.89919 1.21641 1.21382 0.97811 1.01684 0.84138 1.05442 0.73281 0.78840 0.72457 1.93494 1.45794 1.74585 1.82349 1.93586 1.67578 1.75948 1.55809 1.30018 1.10741 1.22339 1.05683 1.18277 0.85032 1.00377 0.92097 1.20462 1.34213 1.01854 0.98839 0.91408 1.24943 0.94706 0.94198 0.98360 1.69962 1.30441 1.12740 1.37768 0.86665 0.78617 0.78681 0.84342 1.19478 1.21134 1.19915 1.23195 0.98734 1.02400 1.00283 1.22556 1.04894 0.89892 1.00779 0.92177 0.90865 0.92359 0.76424 0.91240 0.89922 0.93370 0.88901 0.89940 0.92912 0.91235 0.91470 0.84807 0.88588 0.92630 0.90764 0.89538 0.89573 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.72 10.70 59.84 0.64 1.36 16 2 N -0.74 -7.14 5.61 -67.08 -0.38 -7.52 16 3 C 0.52 6.97 7.15 -10.98 -0.08 6.89 16 4 O -0.54 -9.12 15.92 5.56 0.09 -9.03 16 5 C -0.13 -1.67 2.93 -91.77 -0.27 -1.94 16 6 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 7 C -0.14 -1.98 7.47 37.16 0.28 -1.70 16 8 C 0.15 2.14 4.33 -4.05 -0.02 2.13 16 9 N -1.01 -15.47 2.84 -121.77 -0.35 -15.82 16 10 C 0.10 1.15 10.24 59.84 0.61 1.76 16 11 S 2.60 51.81 4.42 -107.50 -0.48 51.33 16 12 O -0.97 -20.83 17.09 -57.54 -0.98 -21.82 16 13 O -0.94 -20.90 12.67 -57.54 -0.73 -21.63 16 14 C -0.55 -11.82 6.03 37.16 0.22 -11.60 16 15 C 0.04 1.09 1.32 -155.66 -0.21 0.88 16 16 C -0.52 -14.10 8.18 -34.44 -0.28 -14.38 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C 0.08 2.28 5.38 -17.82 -0.10 2.18 16 19 N -0.87 -24.29 12.98 55.43 0.72 -23.57 16 20 Si 0.89 21.44 29.55 -169.99 -5.02 16.42 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 24 C -0.21 -4.61 9.96 -26.69 -0.27 -4.87 16 25 C -0.14 -3.27 9.49 -26.70 -0.25 -3.52 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.40 2.76 8.25 -40.82 -0.34 2.42 16 30 H 0.07 1.13 5.69 -51.93 -0.30 0.83 16 31 H 0.08 1.39 7.39 -51.93 -0.38 1.01 16 32 H 0.05 0.52 7.56 -51.93 -0.39 0.13 16 33 H 0.09 1.56 7.61 -51.93 -0.40 1.17 16 34 H 0.08 1.09 7.78 -51.93 -0.40 0.68 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.07 0.82 7.79 -51.93 -0.40 0.42 16 37 H 0.07 0.63 7.94 -51.93 -0.41 0.22 16 38 H 0.13 3.01 8.14 -51.92 -0.42 2.59 16 39 H 0.10 1.74 8.09 -51.93 -0.42 1.32 16 40 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 41 H 0.07 1.49 8.14 -51.93 -0.42 1.06 16 42 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 43 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 44 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -33.93 371.25 -8.46 -42.39 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.22 Total: 6.46 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 0.29 Total: -22.81 kcal Atomic # 7 Polarization: -46.91 SS G_CDS: 0.00 Total: -46.91 kcal Atomic # 8 Polarization: -50.85 SS G_CDS: -1.62 Total: -52.48 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 51.81 SS G_CDS: -0.48 Total: 51.33 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.93 -8.46 -42.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414223526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.738 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds