Wall clock time and date at job start Fri Apr 10 2020 18:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34776 * 120.00358 * 2 1 4 4 O 1.21283 * 119.99568 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00433 * 180.02562 * 3 2 1 6 6 H 1.09004 * 109.46404 * 300.00254 * 5 3 2 7 7 C 1.53002 * 109.46879 * 59.99854 * 5 3 2 8 8 C 1.52993 * 109.47383 * 180.02562 * 5 3 2 9 9 N 1.46500 * 109.47265 * 174.99734 * 8 5 3 10 10 C 1.46496 * 120.00255 * 275.00203 * 9 8 5 11 11 S 1.65600 * 119.99622 * 94.99743 * 9 8 5 12 12 O 1.42104 * 104.27570 * 206.07266 * 11 9 8 13 13 O 1.42095 * 104.28323 * 333.93043 * 11 9 8 14 14 C 1.81402 * 104.44874 * 90.00540 * 11 9 8 15 15 C 1.53000 * 109.47388 * 173.98155 * 14 11 9 16 16 C 1.50703 * 115.55035 * 65.19582 * 15 14 11 17 17 H 1.08006 * 120.00012 * 264.78971 * 16 15 14 18 18 C 1.37878 * 120.00058 * 84.78350 * 16 15 14 19 19 N 1.31512 * 120.00047 * 352.22917 * 18 16 15 20 20 Si 1.86800 * 120.00113 * 172.22568 * 18 16 15 21 21 H 1.48498 * 109.47351 * 59.99888 * 20 18 16 22 22 H 1.48505 * 109.47144 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46919 * 300.00156 * 20 18 16 24 24 C 1.52998 * 117.49848 * 279.52746 * 15 14 11 25 25 C 1.52998 * 117.50261 * 210.86623 * 15 14 11 26 26 H 1.08998 * 109.47339 * 59.99670 * 1 2 3 27 27 H 1.09000 * 109.47457 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47200 * 300.00142 * 1 2 3 29 29 H 0.97006 * 120.00073 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.46872 * 180.02562 * 7 5 3 31 31 H 1.08998 * 109.47019 * 60.00268 * 7 5 3 32 32 H 1.08997 * 109.47442 * 299.99923 * 7 5 3 33 33 H 1.09005 * 109.47320 * 295.00077 * 8 5 3 34 34 H 1.08996 * 109.47255 * 54.99717 * 8 5 3 35 35 H 1.08993 * 109.47159 * 89.99532 * 10 9 8 36 36 H 1.08999 * 109.46964 * 210.00494 * 10 9 8 37 37 H 1.09004 * 109.46837 * 329.99641 * 10 9 8 38 38 H 1.09005 * 109.47096 * 293.97805 * 14 11 9 39 39 H 1.08998 * 109.47314 * 53.97971 * 14 11 9 40 40 H 0.97000 * 120.00258 * 185.02739 * 19 18 16 41 41 H 1.09003 * 117.49522 * 0.02562 * 24 15 14 42 42 H 1.08996 * 117.49764 * 145.01690 * 24 15 14 43 43 H 1.08996 * 117.50402 * 214.98163 * 25 15 14 44 44 H 1.09002 * 117.49369 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 -0.0006 6 1 4.0095 0.6531 0.8892 7 6 4.1554 0.4462 -1.2502 8 6 4.1559 2.6096 0.0002 9 7 5.6160 2.6112 0.1201 10 6 6.2426 2.5374 1.4422 11 16 6.5582 2.6965 -1.2391 12 8 7.7784 2.0752 -0.8592 13 8 5.7441 2.1456 -2.2652 14 6 6.8054 4.4734 -1.5078 15 6 7.7918 4.6829 -2.6585 16 6 7.3205 4.2161 -4.0117 17 1 7.5925 3.2338 -4.3690 18 6 6.5420 5.0429 -4.7935 19 7 6.0834 6.1730 -4.3014 20 14 6.1388 4.5581 -6.5519 21 1 5.4048 3.2672 -6.5536 22 1 5.2941 5.6093 -7.1739 23 1 7.3976 4.4127 -7.3263 24 6 9.2830 4.5472 -2.3442 25 6 8.6792 5.9283 -2.6105 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.9500 -0.8401 -0.0004 30 1 5.2454 0.4458 -1.2504 31 1 3.7917 0.9602 -2.1399 32 1 3.7921 -0.5815 -1.2503 33 1 3.8672 3.0976 -0.9308 34 1 3.7217 3.1481 0.8425 35 1 6.4040 1.4933 1.7100 36 1 7.1993 3.0592 1.4205 37 1 5.5904 3.0050 2.1799 38 1 5.8520 4.9393 -1.7571 39 1 7.2046 4.9260 -0.6001 40 1 5.4767 6.7193 -4.8252 41 1 9.5613 4.3082 -1.3178 42 1 9.9232 4.1206 -3.1164 43 1 8.9224 6.4099 -3.5576 44 1 8.5599 6.5987 -1.7593 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414223526.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:09 Heat of formation + Delta-G solvation = -106.060824 kcal Electronic energy + Delta-G solvation = -26425.058467 eV Core-core repulsion = 22697.724550 eV Total energy + Delta-G solvation = -3727.333917 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.97329 -38.58472 -38.07096 -37.72402 -36.67456 -35.64243 -34.09199 -33.77447 -29.84950 -28.53046 -27.67507 -27.50797 -26.24665 -23.47707 -23.00468 -21.40709 -21.05729 -19.70037 -18.73930 -18.43635 -18.05574 -17.25696 -16.94680 -16.73760 -16.61072 -16.41523 -15.70612 -15.48596 -15.18771 -14.84106 -14.76708 -14.28725 -14.01386 -13.83216 -13.73594 -13.67424 -13.37673 -13.22279 -13.09854 -13.06353 -12.87745 -12.85217 -12.64236 -12.43251 -12.35369 -12.29483 -12.08842 -11.90897 -11.77717 -11.52450 -10.89433 -10.85272 -10.55963 -10.17586 -10.11636 -9.75838 -8.19653 -6.34495 -0.51032 1.38175 1.40178 1.46915 1.59682 1.89864 2.34212 2.38805 3.00257 3.07795 3.35166 3.42455 3.61707 3.76930 3.89222 4.01499 4.18433 4.27043 4.34084 4.50011 4.51154 4.57920 4.61213 4.65449 4.74047 4.80220 4.83839 4.87233 4.94254 4.95894 4.96720 5.00771 5.15761 5.19958 5.43910 5.46507 5.48733 5.57040 5.68506 5.71038 6.21856 6.52532 6.71903 7.23724 7.37861 8.87338 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014190 B = 0.004853 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.679639 B = 5768.105376 C = 6936.660658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.722 5.722 3 C 0.521 3.479 4 O -0.582 6.582 5 C -0.123 4.123 6 H 0.133 0.867 7 C -0.138 4.138 8 C 0.140 3.860 9 N -1.003 6.003 10 C 0.081 3.919 11 S 2.619 3.381 12 O -0.987 6.987 13 O -0.970 6.970 14 C -0.561 4.561 15 C 0.012 3.988 16 C -0.532 4.532 17 H 0.052 0.948 18 C 0.042 3.958 19 N -0.895 5.895 20 Si 0.935 3.065 21 H -0.276 1.276 22 H -0.277 1.277 23 H -0.266 1.266 24 C -0.194 4.194 25 C -0.143 4.143 26 H 0.043 0.957 27 H 0.112 0.888 28 H 0.054 0.946 29 H 0.418 0.582 30 H 0.049 0.951 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.061 0.939 34 H 0.102 0.898 35 H 0.069 0.931 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.114 0.886 39 H 0.126 0.874 40 H 0.264 0.736 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 -11.578 14.087 19.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.375 5.375 3 C 0.307 3.693 4 O -0.462 6.462 5 C -0.146 4.146 6 H 0.151 0.849 7 C -0.195 4.195 8 C 0.014 3.986 9 N -0.841 5.841 10 C -0.063 4.063 11 S 2.716 3.284 12 O -0.977 6.977 13 O -0.960 6.960 14 C -0.692 4.692 15 C 0.010 3.990 16 C -0.569 4.569 17 H 0.070 0.930 18 C -0.161 4.161 19 N -0.531 5.531 20 Si 0.760 3.240 21 H -0.201 1.201 22 H -0.202 1.202 23 H -0.190 1.190 24 C -0.231 4.231 25 C -0.182 4.182 26 H 0.062 0.938 27 H 0.130 0.870 28 H 0.073 0.927 29 H 0.255 0.745 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.133 0.867 39 H 0.144 0.856 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.749 -11.403 13.567 18.965 hybrid contribution -0.232 0.534 -1.134 1.275 sum -6.981 -10.870 12.433 17.930 Atomic orbital electron populations 1.21682 0.78738 1.04264 1.01391 1.45745 1.08421 1.08599 1.74692 1.20731 0.90103 0.83826 0.74644 1.90693 1.71253 1.32940 1.51291 1.21705 0.90979 0.99293 1.02583 0.84895 1.21886 1.01330 1.00450 0.95878 1.21080 0.78184 0.95610 1.03697 1.57512 1.15268 1.89559 1.21766 1.21771 0.98490 1.03338 0.82686 1.04647 0.73012 0.77812 0.72881 1.93462 1.46942 1.74496 1.82818 1.93556 1.68193 1.76213 1.58068 1.29979 1.09096 1.24335 1.05825 1.18406 0.86777 1.01732 0.92085 1.20670 1.34299 1.01261 1.00686 0.93011 1.25541 0.94881 0.94418 1.01273 1.70027 1.31020 1.13380 1.38685 0.85963 0.78724 0.78219 0.81096 1.20093 1.20164 1.19031 1.23241 0.97054 1.01227 1.01589 1.22515 1.04797 0.90271 1.00608 0.93799 0.86955 0.92699 0.74488 0.93173 0.93311 0.89742 0.92020 0.88016 0.91271 0.91008 0.88255 0.86741 0.85597 0.92643 0.88268 0.89769 0.91568 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 10.70 127.77 1.37 2.56 16 2 N -0.72 -12.23 5.61 -484.54 -2.72 -14.94 16 3 C 0.52 13.15 7.15 87.66 0.63 13.78 16 4 O -0.58 -19.64 15.92 -3.04 -0.05 -19.69 16 5 C -0.12 -2.95 2.93 -11.54 -0.03 -2.98 16 6 H 0.13 2.25 8.14 -2.38 -0.02 2.23 16 7 C -0.14 -3.83 7.47 71.98 0.54 -3.30 16 8 C 0.14 4.03 4.33 86.38 0.37 4.41 16 9 N -1.00 -29.12 2.84 -539.16 -1.53 -30.65 16 10 C 0.08 1.69 10.24 127.77 1.31 3.00 16 11 S 2.62 103.92 4.42 -56.49 -0.25 103.67 16 12 O -0.99 -41.33 17.09 -127.65 -2.18 -43.51 16 13 O -0.97 -44.47 12.67 -127.65 -1.62 -46.09 16 14 C -0.56 -23.91 6.03 71.98 0.43 -23.47 16 15 C 0.01 0.60 1.32 -52.93 -0.07 0.53 16 16 C -0.53 -29.73 8.18 25.60 0.21 -29.52 16 17 H 0.05 2.97 7.83 -2.91 -0.02 2.95 16 18 C 0.04 2.32 5.38 84.66 0.46 2.78 16 19 N -0.90 -50.78 12.98 21.45 0.28 -50.50 16 20 Si 0.93 44.67 29.55 68.60 2.03 46.70 16 21 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 24 C -0.19 -8.40 9.96 30.62 0.30 -8.09 16 25 C -0.14 -6.54 9.49 30.62 0.29 -6.25 16 26 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.42 4.28 8.25 -92.70 -0.76 3.52 16 30 H 0.05 1.60 5.69 -2.39 -0.01 1.58 16 31 H 0.05 1.68 7.39 -2.39 -0.02 1.66 16 32 H 0.08 1.65 7.56 -2.39 -0.02 1.63 16 33 H 0.06 2.16 7.61 -2.38 -0.02 2.14 16 34 H 0.10 2.52 7.78 -2.39 -0.02 2.50 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.48 7.79 -2.39 -0.02 1.46 16 37 H 0.10 1.45 7.94 -2.39 -0.02 1.43 16 38 H 0.11 5.31 8.14 -2.39 -0.02 5.29 16 39 H 0.13 4.41 8.09 -2.39 -0.02 4.39 16 40 H 0.26 14.36 8.32 -92.71 -0.77 13.59 16 41 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 42 H 0.08 3.63 8.14 -2.39 -0.02 3.61 16 43 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 44 H 0.09 3.52 8.14 -2.39 -0.02 3.50 16 Total: -1.00 -75.69 371.25 -0.01 -75.69 By element: Atomic # 1 Polarization: 25.65 SS G_CDS: 0.23 Total: 25.88 kcal Atomic # 6 Polarization: -52.37 SS G_CDS: 5.81 Total: -46.57 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -3.97 Total: -96.09 kcal Atomic # 8 Polarization: -105.44 SS G_CDS: -3.85 Total: -109.28 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 103.92 SS G_CDS: -0.25 Total: 103.67 kcal Total: -75.69 -0.01 -75.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414223526.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.368 kcal (2) G-P(sol) polarization free energy of solvation -75.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds