Wall clock time and date at job start Fri Apr 10 2020 18:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 120.00137 * 2 1 4 4 O 1.21288 * 119.99993 * 359.97438 * 3 2 1 5 5 C 1.50702 * 120.00218 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.46957 * 60.00177 * 5 3 2 7 7 C 1.53000 * 109.47245 * 300.00104 * 5 3 2 8 8 C 1.52999 * 109.47124 * 179.97438 * 5 3 2 9 9 N 1.46494 * 109.47148 * 183.26317 * 8 5 3 10 10 C 1.46498 * 120.00218 * 275.25808 * 9 8 5 11 11 S 1.65608 * 120.00064 * 95.25712 * 9 8 5 12 12 O 1.42097 * 104.27302 * 333.93035 * 11 9 8 13 13 O 1.42098 * 104.27983 * 206.07499 * 11 9 8 14 14 C 1.81396 * 104.44915 * 89.99812 * 11 9 8 15 15 C 1.52995 * 109.47156 * 186.23373 * 14 11 9 16 16 C 1.50704 * 115.55111 * 294.45112 * 15 14 11 17 17 H 1.07998 * 119.99966 * 95.33307 * 16 15 14 18 18 C 1.37878 * 119.99869 * 275.32347 * 16 15 14 19 19 N 1.31520 * 120.00003 * 7.32929 * 18 16 15 20 20 Si 1.86799 * 120.00013 * 187.32253 * 18 16 15 21 21 H 1.48495 * 109.47133 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47084 * 300.00226 * 20 18 16 23 23 H 1.48497 * 109.47033 * 60.00332 * 20 18 16 24 24 C 1.52999 * 117.49772 * 80.12074 * 15 14 11 25 25 C 1.52997 * 117.49944 * 148.78057 * 15 14 11 26 26 H 1.08996 * 109.46793 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46797 * 300.00292 * 1 2 3 28 28 H 1.08994 * 109.46831 * 59.99639 * 1 2 3 29 29 H 0.97005 * 120.00536 * 180.02562 * 2 1 3 30 30 H 1.08993 * 109.47068 * 173.60819 * 7 5 3 31 31 H 1.08993 * 109.46962 * 293.60861 * 7 5 3 32 32 H 1.09005 * 109.46723 * 53.60713 * 7 5 3 33 33 H 1.09006 * 109.46892 * 63.26650 * 8 5 3 34 34 H 1.08997 * 109.47601 * 303.26792 * 8 5 3 35 35 H 1.09000 * 109.47369 * 264.82406 * 10 9 8 36 36 H 1.08998 * 109.47323 * 24.82704 * 10 9 8 37 37 H 1.09002 * 109.47450 * 144.82852 * 10 9 8 38 38 H 1.09008 * 109.46884 * 66.23586 * 14 11 9 39 39 H 1.08993 * 109.47546 * 306.23800 * 14 11 9 40 40 H 0.96992 * 119.99815 * 356.00914 * 19 18 16 41 41 H 1.09006 * 117.49803 * 215.00180 * 24 15 14 42 42 H 1.08999 * 117.49787 * 0.02562 * 24 15 14 43 43 H 1.09007 * 117.49846 * 359.97438 * 25 15 14 44 44 H 1.09003 * 117.50493 * 144.97418 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 -0.0005 5 6 3.6460 1.1672 0.0006 6 1 4.0096 0.6532 -0.8892 7 6 4.1555 0.4462 1.2502 8 6 4.1559 2.6097 -0.0002 9 7 5.6188 2.6104 -0.0782 10 6 6.4175 2.4714 1.1419 11 16 6.3696 2.7684 -1.5458 12 8 5.4227 2.2677 -2.4795 13 8 7.6278 2.1328 -1.3661 14 6 6.5842 4.5575 -1.7543 15 6 7.1326 4.8458 -3.1532 16 6 8.5218 4.3291 -3.4260 17 1 8.6570 3.3734 -3.9105 18 6 9.6201 5.0766 -3.0573 19 7 9.4621 6.1684 -2.3411 20 14 11.3325 4.5386 -3.5746 21 1 12.3331 5.5050 -3.0550 22 1 11.6152 3.1892 -3.0228 23 1 11.4104 4.4937 -5.0569 24 6 6.1379 4.8459 -4.3157 25 6 6.7277 6.1657 -3.8125 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.9501 -0.8400 -0.0004 30 1 5.2394 0.3461 1.1952 31 1 3.8883 1.0220 2.1362 32 1 3.7017 -0.5431 1.3092 33 1 3.8408 3.1070 0.9172 34 1 3.7459 3.1396 -0.8599 35 1 6.6989 3.4593 1.5066 36 1 5.8315 1.9564 1.9032 37 1 7.3167 1.8951 0.9240 38 1 7.2843 4.9291 -1.0059 39 1 5.6226 5.0556 -1.6312 40 1 8.5701 6.4794 -2.1215 41 1 6.4883 4.4722 -5.2779 42 1 5.0928 4.6409 -4.0838 43 1 6.0702 6.8285 -3.2497 44 1 7.4661 6.6607 -4.4433 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414223548.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:13 Heat of formation + Delta-G solvation = -89.031321 kcal Electronic energy + Delta-G solvation = -26207.402324 eV Core-core repulsion = 22480.806861 eV Total energy + Delta-G solvation = -3726.595462 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.07741 -37.07967 -36.87950 -36.38186 -35.15053 -34.81718 -32.70393 -31.97544 -28.29964 -28.04197 -27.13392 -25.01800 -24.56488 -22.80999 -21.39111 -20.29483 -19.79477 -18.28962 -17.56576 -17.05700 -16.84035 -16.34131 -15.81048 -15.47428 -15.35681 -14.54497 -14.33763 -14.05973 -13.74469 -13.72489 -13.55299 -13.25269 -12.98663 -12.74785 -12.58733 -12.51109 -12.48088 -12.02301 -11.86341 -11.56654 -11.37013 -11.30740 -11.17073 -11.05458 -10.88229 -10.77797 -10.62127 -10.34698 -10.08589 -9.94490 -9.69946 -9.36132 -8.93632 -8.64791 -8.48485 -8.27726 -6.45461 -4.23437 0.93268 2.50351 2.94670 3.31163 3.44888 3.48340 3.65506 4.45088 4.48890 4.51228 4.68564 4.71360 4.83161 4.94239 4.99290 5.03269 5.21904 5.22885 5.26002 5.41796 5.49420 5.52514 5.55245 5.64165 5.66794 5.79932 5.88029 5.96187 5.98922 6.05800 6.16094 6.16230 6.21803 6.37135 6.56374 6.73645 6.80032 7.04356 7.18993 7.22607 8.03309 8.05139 8.34151 8.77073 9.55365 10.94520 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023517 B = 0.003814 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.367280 B = 7339.625141 C = 7850.473980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.738 5.738 3 C 0.524 3.476 4 O -0.538 6.538 5 C -0.134 4.134 6 H 0.110 0.890 7 C -0.146 4.146 8 C 0.147 3.853 9 N -1.013 6.013 10 C 0.077 3.923 11 S 2.612 3.388 12 O -0.967 6.967 13 O -0.944 6.944 14 C -0.567 4.567 15 C 0.021 3.979 16 C -0.590 4.590 17 H 0.061 0.939 18 C 0.038 3.962 19 N -0.898 5.898 20 Si 1.063 2.937 21 H -0.281 1.281 22 H -0.281 1.281 23 H -0.285 1.285 24 C -0.192 4.192 25 C -0.164 4.164 26 H 0.073 0.927 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.402 0.598 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.126 0.874 39 H 0.100 0.900 40 H 0.275 0.725 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.268 -11.035 8.886 19.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.390 5.390 3 C 0.310 3.690 4 O -0.415 6.415 5 C -0.157 4.157 6 H 0.128 0.872 7 C -0.203 4.203 8 C 0.020 3.980 9 N -0.849 5.849 10 C -0.068 4.068 11 S 2.709 3.291 12 O -0.958 6.958 13 O -0.934 6.934 14 C -0.699 4.699 15 C 0.018 3.982 16 C -0.627 4.627 17 H 0.080 0.920 18 C -0.169 4.169 19 N -0.531 5.531 20 Si 0.890 3.110 21 H -0.207 1.207 22 H -0.207 1.207 23 H -0.212 1.212 24 C -0.229 4.229 25 C -0.204 4.204 26 H 0.092 0.908 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.236 0.764 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.144 0.856 39 H 0.119 0.881 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.868 -10.621 8.535 18.069 hybrid contribution -1.682 -0.075 0.151 1.691 sum -13.550 -10.696 8.686 19.325 Atomic orbital electron populations 1.21527 0.79717 1.02079 1.02367 1.45821 1.07710 1.08906 1.76545 1.20617 0.89897 0.83520 0.74940 1.90704 1.70533 1.31232 1.48996 1.21823 0.91303 1.00576 1.02019 0.87229 1.21926 1.02809 0.99558 0.96031 1.20910 0.78817 0.93957 1.04283 1.57863 1.13372 1.89170 1.24465 1.21711 0.96145 1.02061 0.86910 1.05084 0.73436 0.78531 0.72007 1.93494 1.62836 1.78548 1.60900 1.93530 1.42647 1.73222 1.84017 1.30150 1.07542 1.23662 1.08585 1.18570 0.95036 0.99516 0.85052 1.21371 0.88593 1.07537 1.45160 0.92034 1.25828 1.04042 0.94307 0.92753 1.70766 1.26850 1.23179 1.32300 0.83634 0.74798 0.76209 0.76331 1.20651 1.20706 1.21153 1.23074 0.97235 1.02581 1.00039 1.22803 1.02539 0.90499 1.04512 0.90770 0.92293 0.92162 0.76392 0.90411 0.91907 0.92372 0.89929 0.89348 0.92860 0.90561 0.89865 0.85581 0.88120 0.91387 0.89258 0.90436 0.91168 0.89278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 10.70 59.85 0.64 1.29 16 2 N -0.74 -6.50 5.56 -67.08 -0.37 -6.88 16 3 C 0.52 6.50 7.15 -10.98 -0.08 6.42 16 4 O -0.54 -8.58 15.95 5.55 0.09 -8.49 16 5 C -0.13 -1.61 2.94 -91.77 -0.27 -1.88 16 6 H 0.11 1.41 7.93 -51.93 -0.41 1.00 16 7 C -0.15 -1.29 7.72 37.16 0.29 -1.01 16 8 C 0.15 2.03 4.11 -4.05 -0.02 2.01 16 9 N -1.01 -15.35 3.01 -121.76 -0.37 -15.71 16 10 C 0.08 0.97 9.51 59.85 0.57 1.54 16 11 S 2.61 52.92 5.11 -107.50 -0.55 52.37 16 12 O -0.97 -20.87 16.77 -57.54 -0.97 -21.83 16 13 O -0.94 -22.18 16.32 -57.54 -0.94 -23.12 16 14 C -0.57 -12.07 5.92 37.16 0.22 -11.85 16 15 C 0.02 0.51 0.88 -155.66 -0.14 0.37 16 16 C -0.59 -16.42 8.21 -34.44 -0.28 -16.71 16 17 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 18 C 0.04 1.06 5.39 -17.82 -0.10 0.96 16 19 N -0.90 -25.89 13.57 55.43 0.75 -25.14 16 20 Si 1.06 25.19 29.91 -169.99 -5.08 20.10 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.19 -4.29 9.96 -26.69 -0.27 -4.55 16 25 C -0.16 -3.75 8.76 -26.70 -0.23 -3.99 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.40 2.42 8.18 -40.82 -0.33 2.09 16 30 H 0.08 0.72 6.19 -51.93 -0.32 0.40 16 31 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 32 H 0.06 0.38 7.39 -51.93 -0.38 0.00 16 33 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 34 H 0.09 1.34 7.47 -51.93 -0.39 0.95 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.72 5.61 -51.93 -0.29 0.43 16 37 H 0.08 1.14 7.04 -51.93 -0.37 0.77 16 38 H 0.13 2.76 7.84 -51.92 -0.41 2.35 16 39 H 0.10 1.83 8.09 -51.93 -0.42 1.41 16 40 H 0.27 7.76 6.22 -40.82 -0.25 7.51 16 41 H 0.09 1.98 8.14 -51.93 -0.42 1.55 16 42 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 43 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 44 H 0.09 2.14 8.14 -51.93 -0.42 1.71 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -35.67 369.74 -8.53 -44.20 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -7.00 Total: 6.30 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 0.34 Total: -27.38 kcal Atomic # 7 Polarization: -47.74 SS G_CDS: 0.01 Total: -47.73 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -1.82 Total: -53.44 kcal Atomic # 14 Polarization: 25.19 SS G_CDS: -5.08 Total: 20.10 kcal Atomic # 16 Polarization: 52.92 SS G_CDS: -0.55 Total: 52.37 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.67 -8.53 -44.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414223548.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.833 kcal (2) G-P(sol) polarization free energy of solvation -35.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds