Wall clock time and date at job start Fri Apr 10 2020 18:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34226 * 117.00281 * 2 1 4 4 O 1.20826 * 119.99741 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00032 * 180.02562 * 3 2 1 6 6 N 1.46504 * 109.46985 * 180.02562 * 5 3 2 7 7 C 1.37099 * 119.99873 * 269.99578 * 6 5 3 8 8 H 1.08000 * 119.99597 * 193.28376 * 7 6 5 9 9 C 1.38945 * 119.99998 * 13.28759 * 7 6 5 10 10 N 1.31413 * 120.00160 * 9.03926 * 9 7 6 11 11 Si 1.86798 * 119.99851 * 189.03536 * 9 7 6 12 12 H 1.48500 * 109.47249 * 0.02562 * 11 9 7 13 13 H 1.48498 * 109.47228 * 120.00115 * 11 9 7 14 14 H 1.48507 * 109.47186 * 239.99842 * 11 9 7 15 15 C 1.34774 * 119.99858 * 89.99921 * 6 5 3 16 16 O 1.21289 * 120.00440 * 4.48604 * 15 6 5 17 17 C 1.50706 * 119.99896 * 184.48030 * 15 6 5 18 18 N 1.46899 * 109.46889 * 173.24201 * 17 15 6 19 19 C 1.47911 * 110.99653 * 163.25712 * 18 17 15 20 20 C 1.54598 * 102.62842 * 94.66164 * 19 18 17 21 21 C 1.51578 * 102.81444 * 25.60999 * 20 19 18 22 22 C 1.37923 * 131.56962 * 163.77338 * 21 20 19 23 23 C 1.38300 * 120.07780 * 180.32344 * 22 21 20 24 24 C 1.38303 * 119.88758 * 359.97438 * 23 22 21 25 25 C 1.37908 * 120.26396 * 359.87357 * 24 23 22 26 26 C 1.38959 * 107.94507 * 343.80455 * 21 20 19 27 27 H 1.09005 * 109.47371 * 59.99529 * 1 2 3 28 28 H 1.09002 * 109.47789 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47575 * 300.00024 * 1 2 3 30 30 H 1.08996 * 109.47373 * 60.00462 * 5 3 2 31 31 H 1.09005 * 109.47255 * 300.00001 * 5 3 2 32 32 H 0.96997 * 119.99760 * 185.00512 * 10 9 7 33 33 H 1.08996 * 109.46731 * 53.24798 * 17 15 6 34 34 H 1.09000 * 109.47453 * 293.24685 * 17 15 6 35 35 H 1.09004 * 110.77763 * 212.95218 * 19 18 17 36 36 H 1.08999 * 110.77744 * 336.18475 * 19 18 17 37 37 H 1.09001 * 110.73987 * 143.93656 * 20 19 18 38 38 H 1.08997 * 110.74905 * 267.27721 * 20 19 18 39 39 H 1.08000 * 119.96019 * 0.28311 * 22 21 20 40 40 H 1.08001 * 120.05847 * 179.97438 * 23 22 21 41 41 H 1.08001 * 119.86985 * 179.89796 * 24 23 22 42 42 H 1.08002 * 119.90423 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9817 2.6796 0.0002 7 6 4.1756 3.3377 -1.1868 8 1 4.6818 4.2917 -1.1989 9 6 3.7209 2.7774 -2.3742 10 7 2.9531 1.7113 -2.3460 11 14 4.2009 3.5397 -4.0106 12 1 5.0653 4.7231 -3.7709 13 1 4.9425 2.5420 -4.8229 14 1 2.9768 3.9596 -4.7391 15 6 4.1732 3.3251 1.1677 16 8 4.0813 2.7223 2.2161 17 6 4.5018 4.7959 1.1705 18 7 4.5022 5.2948 2.5522 19 6 5.1950 6.5983 2.6447 20 6 4.0306 7.6089 2.5306 21 6 2.8433 6.8119 3.0333 22 6 1.5904 7.2043 3.4556 23 6 0.6742 6.2590 3.8797 24 6 1.0164 4.9190 3.8792 25 6 2.2668 4.5210 3.4550 26 6 3.1951 5.4676 3.0238 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3635 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 3.9556 0.7809 -0.8908 31 1 3.9564 0.7804 0.8892 32 1 2.6953 1.2773 -3.1743 33 1 3.7545 5.3361 0.5894 34 1 5.4863 4.9491 0.7285 35 1 5.7022 6.6994 3.6043 36 1 5.8995 6.7211 1.8221 37 1 4.2094 8.4770 3.1651 38 1 3.8818 7.9110 1.4940 39 1 1.3245 8.2511 3.4557 40 1 -0.3067 6.5667 4.2107 41 1 0.3013 4.1811 4.2120 42 1 2.5277 3.4730 3.4566 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348796036.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:35 Heat of formation + Delta-G solvation = -68.243253 kcal Electronic energy + Delta-G solvation = -27901.297356 eV Core-core repulsion = 24040.159381 eV Total energy + Delta-G solvation = -3861.137975 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.88890 -41.18641 -39.90685 -37.67886 -37.19915 -36.49103 -33.46241 -33.24599 -31.31649 -30.26124 -29.74462 -28.17406 -27.35176 -26.07063 -23.95664 -22.52206 -22.08679 -21.71583 -21.06570 -19.11243 -18.46182 -18.18505 -17.48854 -17.24456 -17.00941 -16.64518 -16.50717 -16.27829 -15.99812 -15.67171 -15.58760 -14.72536 -14.45248 -14.41349 -14.20806 -14.03146 -13.82870 -13.52071 -13.30758 -13.16412 -13.07506 -12.97076 -12.86004 -12.57284 -12.43134 -12.32756 -12.13064 -12.02148 -11.76070 -11.58193 -11.49221 -10.94412 -10.56337 -10.18074 -9.92403 -9.69225 -8.80529 -8.33439 -5.96786 0.39164 0.49986 1.39249 1.46819 1.59440 1.67956 1.83577 2.19491 2.34575 2.54594 2.83612 3.10492 3.16168 3.65733 3.90418 4.08123 4.16171 4.20866 4.23403 4.28871 4.33893 4.34981 4.38918 4.45804 4.54474 4.59072 4.59976 4.71051 4.77205 4.78792 4.93484 4.94859 5.06437 5.21239 5.34816 5.48233 5.57631 5.59817 5.64975 5.73312 5.86976 5.99948 6.33814 6.38165 7.06162 7.23982 7.48611 7.88565 8.69425 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011938 B = 0.005630 C = 0.004483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2344.801701 B = 4972.236196 C = 6244.287201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.377 6.377 3 C 0.493 3.507 4 O -0.546 6.546 5 C 0.154 3.846 6 N -0.446 5.446 7 C -0.338 4.338 8 H 0.116 0.884 9 C -0.009 4.009 10 N -0.909 5.909 11 Si 0.999 3.001 12 H -0.252 1.252 13 H -0.273 1.273 14 H -0.293 1.293 15 C 0.461 3.539 16 O -0.606 6.606 17 C 0.073 3.927 18 N -0.498 5.498 19 C 0.048 3.952 20 C -0.099 4.099 21 C -0.153 4.153 22 C -0.098 4.098 23 C -0.133 4.133 24 C -0.124 4.124 25 C -0.129 4.129 26 C 0.075 3.925 27 H 0.043 0.957 28 H 0.134 0.866 29 H 0.049 0.951 30 H 0.133 0.867 31 H 0.079 0.921 32 H 0.272 0.728 33 H 0.052 0.948 34 H 0.119 0.881 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.087 0.913 39 H 0.152 0.848 40 H 0.154 0.846 41 H 0.130 0.870 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 8.055 4.685 9.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.293 6.293 3 C 0.336 3.664 4 O -0.435 6.435 5 C 0.029 3.971 6 N -0.166 5.166 7 C -0.465 4.465 8 H 0.134 0.866 9 C -0.208 4.208 10 N -0.550 5.550 11 Si 0.823 3.177 12 H -0.175 1.175 13 H -0.198 1.198 14 H -0.220 1.220 15 C 0.250 3.750 16 O -0.492 6.492 17 C -0.055 4.055 18 N -0.216 5.216 19 C -0.078 4.078 20 C -0.137 4.137 21 C -0.156 4.156 22 C -0.116 4.116 23 C -0.151 4.151 24 C -0.142 4.142 25 C -0.149 4.149 26 C -0.021 4.021 27 H 0.062 0.938 28 H 0.152 0.848 29 H 0.068 0.932 30 H 0.151 0.849 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.137 0.863 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.105 0.895 39 H 0.170 0.830 40 H 0.172 0.828 41 H 0.148 0.852 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.312 7.570 5.316 9.255 hybrid contribution -0.789 0.071 -1.443 1.646 sum -1.101 7.640 3.873 8.636 Atomic orbital electron populations 1.23264 0.76413 1.04770 1.01011 1.86426 1.23919 1.33960 1.85029 1.24060 0.92586 0.80632 0.69090 1.90476 1.67450 1.37676 1.47871 1.20653 0.86953 0.85773 1.03741 1.43633 1.58246 1.08876 1.05857 1.20174 1.36132 1.06805 0.83349 0.86604 1.26098 0.94406 0.97184 1.03160 1.69782 1.33934 1.22192 1.29100 0.84763 0.77522 0.78760 0.76641 1.17491 1.19827 1.21963 1.20657 0.81368 0.90046 0.82886 1.90460 1.57644 1.68922 1.32133 1.21756 1.03192 0.92319 0.88256 1.59668 1.13185 1.29316 1.19456 1.23390 0.96220 0.83507 1.04657 1.21721 0.90737 0.98847 1.02415 1.21463 0.97044 0.94580 1.02480 1.20732 0.91508 1.00885 0.98488 1.21374 1.00633 0.91987 1.01111 1.21160 0.95233 0.97600 1.00239 1.20972 0.94249 0.99321 1.00356 1.19660 0.89822 0.93926 0.98657 0.93782 0.84829 0.93247 0.84928 0.90269 0.91785 0.92998 0.86315 0.88273 0.87581 0.86775 0.89495 0.83020 0.82806 0.85223 0.88185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.37 10.56 113.37 1.20 2.57 16 2 O -0.38 -16.82 10.56 -51.38 -0.54 -17.36 16 3 C 0.49 25.49 5.97 71.23 0.43 25.91 16 4 O -0.55 -31.54 16.01 21.96 0.35 -31.19 16 5 C 0.15 7.78 5.28 85.63 0.45 8.23 16 6 N -0.45 -22.86 2.11 -639.60 -1.35 -24.21 16 7 C -0.34 -16.73 9.20 84.04 0.77 -15.96 16 8 H 0.12 5.22 6.54 -2.91 -0.02 5.20 16 9 C -0.01 -0.45 5.23 84.92 0.44 0.00 16 10 N -0.91 -46.92 8.37 21.66 0.18 -46.73 16 11 Si 1.00 38.82 29.57 68.60 2.03 40.84 16 12 H -0.25 -8.98 7.11 99.48 0.71 -8.28 16 13 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 14 H -0.29 -11.86 7.11 99.48 0.71 -11.15 16 15 C 0.46 22.98 7.23 87.66 0.63 23.61 16 16 O -0.61 -32.87 13.27 -3.06 -0.04 -32.91 16 17 C 0.07 2.98 3.76 85.56 0.32 3.30 16 18 N -0.50 -18.82 4.61 -692.95 -3.19 -22.01 16 19 C 0.05 1.24 6.99 86.65 0.61 1.85 16 20 C -0.10 -2.33 6.97 30.67 0.21 -2.12 16 21 C -0.15 -4.80 6.23 -19.49 -0.12 -4.93 16 22 C -0.10 -2.68 10.03 22.21 0.22 -2.46 16 23 C -0.13 -3.77 10.06 22.30 0.22 -3.55 16 24 C -0.12 -4.35 10.02 22.21 0.22 -4.13 16 25 C -0.13 -5.54 9.29 22.47 0.21 -5.33 16 26 C 0.08 2.97 5.23 38.29 0.20 3.17 16 27 H 0.04 1.63 8.13 -2.38 -0.02 1.61 16 28 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 29 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 30 H 0.13 6.68 6.11 -2.39 -0.01 6.67 16 31 H 0.08 3.86 7.36 -2.38 -0.02 3.85 16 32 H 0.27 13.40 8.32 -92.71 -0.77 12.63 16 33 H 0.05 2.23 7.74 -2.39 -0.02 2.21 16 34 H 0.12 4.16 7.38 -2.39 -0.02 4.14 16 35 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.11 2.24 7.48 -2.39 -0.02 2.22 16 37 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 40 H 0.15 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.13 4.06 8.06 -2.91 -0.02 4.03 16 42 H 0.10 5.03 5.94 -2.91 -0.02 5.01 16 Total: -1.00 -72.03 347.77 4.50 -67.53 By element: Atomic # 1 Polarization: 34.82 SS G_CDS: 1.04 Total: 35.86 kcal Atomic # 6 Polarization: 24.16 SS G_CDS: 6.02 Total: 30.18 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -4.36 Total: -92.96 kcal Atomic # 8 Polarization: -81.23 SS G_CDS: -0.23 Total: -81.46 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.84 kcal Total: -72.03 4.50 -67.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348796036.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.714 kcal (2) G-P(sol) polarization free energy of solvation -72.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds