Wall clock time and date at job start Fri Apr 10 2020 18:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34225 * 117.00226 * 2 1 4 4 O 1.20834 * 120.00017 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00357 * 180.02562 * 3 2 1 6 6 H 1.08991 * 109.26828 * 74.46541 * 5 3 2 7 7 C 1.50623 * 109.26513 * 314.98575 * 5 3 2 8 8 C 1.38736 * 118.42908 * 42.35416 * 7 5 3 9 9 C 1.38005 * 120.38197 * 179.75016 * 8 7 5 10 10 C 1.38272 * 119.86930 * 359.70886 * 9 8 7 11 11 C 1.38034 * 119.82021 * 0.66985 * 10 9 8 12 12 C 1.37831 * 121.84969 * 222.21898 * 7 5 3 13 13 C 1.50719 * 121.66282 * 0.44444 * 12 7 5 14 14 C 1.52900 * 109.95477 * 343.09041 * 13 12 7 15 15 N 1.46634 * 109.27171 * 193.98551 * 5 3 2 16 16 C 1.46892 * 111.00300 * 49.34675 * 15 5 3 17 17 C 1.50703 * 109.47396 * 188.75293 * 16 15 5 18 18 O 1.21300 * 119.99411 * 5.55759 * 17 16 15 19 19 N 1.34770 * 120.00622 * 185.55900 * 17 16 15 20 20 C 1.37100 * 120.00538 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99706 * 359.97438 * 20 19 17 22 22 C 1.38944 * 120.00173 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00437 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00047 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47246 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46994 * 120.00144 * 24 22 20 27 27 H 1.48499 * 109.47580 * 240.00156 * 24 22 20 28 28 H 1.08997 * 109.46971 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47450 * 299.99886 * 1 2 3 30 30 H 1.09005 * 109.47135 * 59.99996 * 1 2 3 31 31 H 1.08003 * 119.80710 * 359.72515 * 8 7 5 32 32 H 1.08004 * 120.07140 * 180.02562 * 9 8 7 33 33 H 1.08002 * 120.08854 * 180.37171 * 10 9 8 34 34 H 1.07999 * 119.82227 * 179.63226 * 11 10 9 35 35 H 1.08996 * 109.38920 * 103.24177 * 13 12 7 36 36 H 1.08996 * 109.38800 * 222.94328 * 13 12 7 37 37 H 1.08999 * 109.62837 * 170.10381 * 14 13 12 38 38 H 1.08996 * 109.62862 * 290.69975 * 14 13 12 39 39 H 1.08999 * 109.47604 * 308.75747 * 16 15 5 40 40 H 1.09007 * 109.47118 * 68.75670 * 16 15 5 41 41 H 0.97002 * 120.00027 * 359.97438 * 19 17 16 42 42 H 0.96993 * 120.00931 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9396 1.0187 -0.9921 7 6 4.1157 0.2969 1.0047 8 6 3.5479 -0.9670 1.0750 9 6 4.0231 -1.8965 1.9776 10 6 5.0751 -1.5695 2.8133 11 6 5.6360 -0.3098 2.7501 12 6 5.1587 0.6250 1.8438 13 6 5.8033 1.9870 1.8094 14 6 5.4393 2.7039 0.5089 15 7 3.9795 2.6414 0.3341 16 6 3.2842 3.1223 1.5353 17 6 3.5662 4.5906 1.7251 18 8 4.1922 5.2014 0.8846 19 7 3.1229 5.2249 2.8284 20 6 3.3789 6.5607 3.0008 21 1 3.9363 7.1046 2.2524 22 6 2.9214 7.2147 4.1381 23 7 2.2428 6.5531 5.0484 24 14 3.2709 9.0346 4.3732 25 1 4.0466 9.5435 3.2136 26 1 1.9881 9.7760 4.4738 27 1 4.0553 9.2312 5.6187 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.7290 -1.2249 0.4197 32 1 3.5776 -2.8791 2.0278 33 1 5.4537 -2.2961 3.5169 34 1 6.4537 -0.0524 3.4069 35 1 5.4520 2.5750 2.6573 36 1 6.8859 1.8767 1.8711 37 1 5.7575 3.7450 0.5633 38 1 5.9302 2.2113 -0.3305 39 1 2.2111 2.9704 1.4195 40 1 3.6376 2.5691 2.4056 41 1 2.6220 4.7365 3.5004 42 1 1.9237 7.0095 5.8425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362434516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:56 Heat of formation + Delta-G solvation = -58.767739 kcal Electronic energy + Delta-G solvation = -27626.198611 eV Core-core repulsion = 23765.471525 eV Total energy + Delta-G solvation = -3860.727086 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.41830 -39.67321 -38.31576 -36.98637 -36.10413 -33.81560 -33.00399 -31.38250 -31.10296 -29.36028 -28.21152 -27.64234 -25.09933 -24.32185 -22.85724 -22.55223 -21.14201 -19.92675 -18.77437 -17.88882 -17.59552 -16.90854 -16.74945 -16.28751 -15.90635 -15.65922 -15.19837 -15.05364 -14.38698 -13.94574 -13.84357 -13.72988 -13.55501 -13.43873 -13.30991 -13.00639 -12.57507 -12.41295 -12.19857 -11.96030 -11.87864 -11.59117 -11.44611 -11.27938 -11.05490 -11.01105 -10.69917 -10.55532 -10.29950 -10.16338 -10.03544 -9.41109 -8.81820 -8.66604 -8.41216 -7.95182 -7.85790 -6.35018 -3.75544 1.19601 1.34305 2.16473 2.53505 3.20536 3.30389 3.37789 3.69922 3.89665 4.01348 4.26833 4.50336 4.62212 4.76402 4.87751 4.97784 5.06461 5.11587 5.16211 5.18671 5.20601 5.31809 5.39006 5.42873 5.51521 5.60481 5.71430 5.79795 5.89275 6.01324 6.08613 6.18343 6.28383 6.35207 6.42083 6.46021 6.51892 6.56668 6.94490 7.12256 7.18695 7.61471 7.75748 8.13470 8.69264 9.25031 9.62328 10.14467 10.83140 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.004080 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.873643 B = 6860.433769 C = 7556.670031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.355 6.355 3 C 0.464 3.536 4 O -0.469 6.469 5 C 0.136 3.864 6 H 0.132 0.868 7 C -0.126 4.126 8 C -0.104 4.104 9 C -0.131 4.131 10 C -0.113 4.113 11 C -0.124 4.124 12 C -0.057 4.057 13 C -0.128 4.128 14 C 0.055 3.945 15 N -0.481 5.481 16 C 0.015 3.985 17 C 0.455 3.545 18 O -0.578 6.578 19 N -0.566 5.566 20 C -0.295 4.295 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.928 3.072 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 H 0.100 0.900 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.149 0.851 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.051 0.949 41 H 0.391 0.609 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.923 -19.861 -5.760 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.272 6.272 3 C 0.305 3.695 4 O -0.354 6.354 5 C 0.026 3.974 6 H 0.149 0.851 7 C -0.128 4.128 8 C -0.122 4.122 9 C -0.149 4.149 10 C -0.131 4.131 11 C -0.142 4.142 12 C -0.057 4.057 13 C -0.166 4.166 14 C -0.072 4.072 15 N -0.203 5.203 16 C -0.115 4.115 17 C 0.240 3.760 18 O -0.462 6.462 19 N -0.203 5.203 20 C -0.425 4.425 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.209 1.209 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.166 0.834 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.133 0.867 38 H 0.093 0.907 39 H 0.132 0.868 40 H 0.068 0.932 41 H 0.224 0.776 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.879 -18.713 -6.563 19.920 hybrid contribution -0.239 -0.006 1.467 1.487 sum 1.640 -18.720 -5.096 19.470 Atomic orbital electron populations 1.23305 0.76759 1.03520 1.02887 1.86547 1.23141 1.32965 1.84521 1.23419 0.91387 0.81564 0.73134 1.90673 1.66443 1.35669 1.42619 1.20362 0.87207 0.89554 1.00278 0.85062 1.20017 0.98078 0.95750 0.98981 1.21718 0.99477 0.92341 0.98620 1.21077 0.97423 0.99515 0.96871 1.21143 0.96470 0.96470 0.98984 1.21087 1.00802 0.93486 0.98830 1.19651 0.95167 0.95970 0.94903 1.21266 1.00972 0.92707 1.01660 1.22435 0.86194 1.03535 0.95078 1.62224 1.06493 1.14909 1.36715 1.22477 1.02085 0.96153 0.90829 1.19551 0.84905 0.87795 0.83753 1.90478 1.44378 1.67602 1.43746 1.41842 1.49443 1.10174 1.18845 1.19744 1.32805 0.84640 1.05292 0.87855 1.25243 0.96831 1.00355 0.95601 1.69625 1.37491 1.37036 1.10360 0.85816 0.78084 0.82254 0.78277 1.19222 1.20813 1.20854 0.88201 0.91706 0.91777 0.83420 0.86131 0.86192 0.85982 0.89465 0.89805 0.86717 0.90710 0.86795 0.93159 0.77619 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.35 -4.12 6.86 -39.24 -0.27 -4.39 16 3 C 0.46 6.86 6.68 36.01 0.24 7.10 16 4 O -0.47 -8.64 13.53 -18.76 -0.25 -8.89 16 5 C 0.14 1.93 2.78 -70.20 -0.20 1.74 16 6 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 7 C -0.13 -1.66 5.05 -104.62 -0.53 -2.19 16 8 C -0.10 -1.19 8.75 -39.48 -0.35 -1.53 16 9 C -0.13 -1.35 10.05 -39.65 -0.40 -1.74 16 10 C -0.11 -1.17 10.05 -39.64 -0.40 -1.57 16 11 C -0.12 -1.46 9.66 -39.49 -0.38 -1.84 16 12 C -0.06 -0.75 5.10 -104.60 -0.53 -1.29 16 13 C -0.13 -1.80 5.15 -27.93 -0.14 -1.94 16 14 C 0.05 0.86 5.58 -3.73 -0.02 0.84 16 15 N -0.48 -8.48 4.42 -230.98 -1.02 -9.50 16 16 C 0.01 0.30 4.28 -4.98 -0.02 0.28 16 17 C 0.45 11.28 7.45 -10.99 -0.08 11.20 16 18 O -0.58 -15.92 14.14 5.54 0.08 -15.84 16 19 N -0.57 -15.02 5.29 -10.96 -0.06 -15.08 16 20 C -0.30 -8.44 9.68 -14.93 -0.14 -8.59 16 21 H 0.10 3.08 7.16 -52.48 -0.38 2.71 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -25.27 13.05 55.50 0.72 -24.55 16 24 Si 0.93 21.50 29.55 -169.99 -5.02 16.48 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 28 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 30 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 31 H 0.15 1.53 5.09 -52.49 -0.27 1.26 16 32 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.09 1.41 6.72 -51.93 -0.35 1.06 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.11 2.16 6.25 -51.93 -0.32 1.84 16 38 H 0.07 0.99 8.05 -51.93 -0.42 0.57 16 39 H 0.11 2.38 4.77 -51.96 -0.25 2.13 16 40 H 0.05 0.95 5.36 -51.92 -0.28 0.67 16 41 H 0.39 10.10 7.90 -40.82 -0.32 9.78 16 42 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 LS Contribution 338.94 15.07 5.11 5.11 Total: -1.00 -33.46 338.94 -7.80 -41.25 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -5.10 Total: 13.12 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -1.98 Total: 2.28 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -0.35 Total: -49.12 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.44 Total: -29.11 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.46 -7.80 -41.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362434516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.513 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds