Wall clock time and date at job start Fri Apr 10 2020 18:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34225 * 117.00226 * 2 1 4 4 O 1.20834 * 120.00017 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00357 * 180.02562 * 3 2 1 6 6 H 1.08991 * 109.26828 * 74.46541 * 5 3 2 7 7 C 1.50623 * 109.26513 * 314.98575 * 5 3 2 8 8 C 1.38736 * 118.42908 * 42.35416 * 7 5 3 9 9 C 1.38005 * 120.38197 * 179.75016 * 8 7 5 10 10 C 1.38272 * 119.86930 * 359.70886 * 9 8 7 11 11 C 1.38034 * 119.82021 * 0.66985 * 10 9 8 12 12 C 1.37831 * 121.84969 * 222.21898 * 7 5 3 13 13 C 1.50719 * 121.66282 * 0.44444 * 12 7 5 14 14 C 1.52900 * 109.95477 * 343.09041 * 13 12 7 15 15 N 1.46634 * 109.27171 * 193.98551 * 5 3 2 16 16 C 1.46892 * 111.00300 * 49.34675 * 15 5 3 17 17 C 1.50703 * 109.47396 * 188.75293 * 16 15 5 18 18 O 1.21300 * 119.99411 * 5.55759 * 17 16 15 19 19 N 1.34770 * 120.00622 * 185.55900 * 17 16 15 20 20 C 1.37100 * 120.00538 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99706 * 359.97438 * 20 19 17 22 22 C 1.38944 * 120.00173 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00437 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 120.00047 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47246 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46994 * 120.00144 * 24 22 20 27 27 H 1.48499 * 109.47580 * 240.00156 * 24 22 20 28 28 H 1.08997 * 109.46971 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47450 * 299.99886 * 1 2 3 30 30 H 1.09005 * 109.47135 * 59.99996 * 1 2 3 31 31 H 1.08003 * 119.80710 * 359.72515 * 8 7 5 32 32 H 1.08004 * 120.07140 * 180.02562 * 9 8 7 33 33 H 1.08002 * 120.08854 * 180.37171 * 10 9 8 34 34 H 1.07999 * 119.82227 * 179.63226 * 11 10 9 35 35 H 1.08996 * 109.38920 * 103.24177 * 13 12 7 36 36 H 1.08996 * 109.38800 * 222.94328 * 13 12 7 37 37 H 1.08999 * 109.62837 * 170.10381 * 14 13 12 38 38 H 1.08996 * 109.62862 * 290.69975 * 14 13 12 39 39 H 1.08999 * 109.47604 * 308.75747 * 16 15 5 40 40 H 1.09007 * 109.47118 * 68.75670 * 16 15 5 41 41 H 0.97002 * 120.00027 * 359.97438 * 19 17 16 42 42 H 0.96993 * 120.00931 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9396 1.0187 -0.9921 7 6 4.1157 0.2969 1.0047 8 6 3.5479 -0.9670 1.0750 9 6 4.0231 -1.8965 1.9776 10 6 5.0751 -1.5695 2.8133 11 6 5.6360 -0.3098 2.7501 12 6 5.1587 0.6250 1.8438 13 6 5.8033 1.9870 1.8094 14 6 5.4393 2.7039 0.5089 15 7 3.9795 2.6414 0.3341 16 6 3.2842 3.1223 1.5353 17 6 3.5662 4.5906 1.7251 18 8 4.1922 5.2014 0.8846 19 7 3.1229 5.2249 2.8284 20 6 3.3789 6.5607 3.0008 21 1 3.9363 7.1046 2.2524 22 6 2.9214 7.2147 4.1381 23 7 2.2428 6.5531 5.0484 24 14 3.2709 9.0346 4.3732 25 1 4.0466 9.5435 3.2136 26 1 1.9881 9.7760 4.4738 27 1 4.0553 9.2312 5.6187 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.7290 -1.2249 0.4197 32 1 3.5776 -2.8791 2.0278 33 1 5.4537 -2.2961 3.5169 34 1 6.4537 -0.0524 3.4069 35 1 5.4520 2.5750 2.6573 36 1 6.8859 1.8767 1.8711 37 1 5.7575 3.7450 0.5633 38 1 5.9302 2.2113 -0.3305 39 1 2.2111 2.9704 1.4195 40 1 3.6376 2.5691 2.4056 41 1 2.6220 4.7365 3.5004 42 1 1.9237 7.0095 5.8425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362434516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:16:55 Heat of formation + Delta-G solvation = -81.588141 kcal Electronic energy + Delta-G solvation = -27627.188178 eV Core-core repulsion = 23765.471525 eV Total energy + Delta-G solvation = -3861.716653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.56947 -40.79235 -39.96366 -38.30710 -37.27942 -35.91084 -34.03708 -33.30710 -32.42987 -30.35283 -29.57058 -28.68061 -26.76914 -25.74854 -24.05253 -23.46821 -22.19188 -21.51423 -20.37810 -19.73475 -18.82169 -18.22157 -17.84075 -17.50858 -17.25811 -16.81940 -16.61445 -16.35776 -16.02921 -15.63899 -15.17247 -14.98520 -14.81885 -14.63916 -14.38909 -14.33353 -14.01481 -13.60315 -13.40018 -13.25765 -13.12742 -13.05384 -12.85457 -12.69699 -12.42056 -12.35321 -12.11554 -11.99693 -11.80796 -11.63829 -11.50454 -11.28112 -10.31000 -10.02322 -9.69679 -9.57697 -9.36838 -8.47088 -5.96391 0.29872 0.47329 1.01793 1.35860 1.40218 1.53479 1.55645 2.03271 2.26387 2.60334 2.83359 3.19000 3.29975 3.50377 3.67394 3.77338 3.89706 4.02152 4.16763 4.22417 4.24572 4.29643 4.35515 4.36324 4.41459 4.54274 4.62385 4.67782 4.72306 4.82909 4.87077 5.01961 5.11587 5.20594 5.27882 5.39994 5.49502 5.63101 5.65678 5.72392 5.90566 6.01565 6.10918 6.57955 6.64985 7.11115 7.52873 8.08495 8.71202 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015075 B = 0.004080 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.873643 B = 6860.433769 C = 7556.670031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.341 6.341 3 C 0.469 3.531 4 O -0.514 6.514 5 C 0.136 3.864 6 H 0.155 0.845 7 C -0.138 4.138 8 C -0.106 4.106 9 C -0.126 4.126 10 C -0.111 4.111 11 C -0.132 4.132 12 C -0.075 4.075 13 C -0.119 4.119 14 C 0.057 3.943 15 N -0.502 5.502 16 C 0.037 3.963 17 C 0.452 3.548 18 O -0.609 6.609 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.081 0.919 22 C -0.015 4.015 23 N -0.924 5.924 24 Si 0.996 3.004 25 H -0.272 1.272 26 H -0.272 1.272 27 H -0.268 1.268 28 H 0.141 0.859 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.159 0.841 32 H 0.151 0.849 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.060 0.940 41 H 0.392 0.608 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.960 -22.374 -5.325 23.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.257 6.257 3 C 0.312 3.688 4 O -0.402 6.402 5 C 0.027 3.973 6 H 0.172 0.828 7 C -0.140 4.140 8 C -0.124 4.124 9 C -0.144 4.144 10 C -0.128 4.128 11 C -0.150 4.150 12 C -0.075 4.075 13 C -0.157 4.157 14 C -0.070 4.070 15 N -0.225 5.225 16 C -0.094 4.094 17 C 0.239 3.761 18 O -0.495 6.495 19 N -0.213 5.213 20 C -0.460 4.460 21 H 0.099 0.901 22 C -0.214 4.214 23 N -0.565 5.565 24 Si 0.819 3.181 25 H -0.196 1.196 26 H -0.197 1.197 27 H -0.194 1.194 28 H 0.159 0.841 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.176 0.824 32 H 0.169 0.831 33 H 0.165 0.835 34 H 0.151 0.849 35 H 0.076 0.924 36 H 0.122 0.878 37 H 0.095 0.905 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.078 0.922 41 H 0.225 0.775 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.913 -21.281 -6.123 22.227 hybrid contribution -0.283 0.639 1.300 1.476 sum 1.630 -20.642 -4.823 21.261 Atomic orbital electron populations 1.23623 0.75111 1.06037 1.02330 1.86536 1.24609 1.30969 1.83622 1.23575 0.91614 0.81748 0.71844 1.90658 1.67341 1.37267 1.44976 1.20440 0.87124 0.87872 1.01889 0.82753 1.19930 0.98589 0.96265 0.99177 1.21857 0.99637 0.91774 0.99148 1.21458 0.96861 1.00423 0.95658 1.21506 0.96008 0.96272 0.99056 1.21295 1.01267 0.93863 0.98559 1.19613 0.96004 0.95650 0.96273 1.21107 1.02308 0.93001 0.99261 1.22342 0.85524 1.01857 0.97303 1.62098 1.07264 1.17762 1.35372 1.22148 1.02055 0.92573 0.92583 1.20407 0.83389 0.89717 0.82584 1.90446 1.45442 1.69011 1.44600 1.41919 1.49970 1.09874 1.19528 1.19727 1.34506 0.85811 1.05942 0.90078 1.26087 0.95944 1.04699 0.94659 1.69696 1.37398 1.38776 1.10642 0.84831 0.78285 0.76628 0.78328 1.19621 1.19701 1.19351 0.84067 0.92779 0.91952 0.82378 0.83148 0.83454 0.84881 0.92436 0.87803 0.90521 0.87949 0.87353 0.92198 0.77524 0.91323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.56 113.37 1.20 1.56 16 2 O -0.34 -7.29 6.86 -51.37 -0.35 -7.64 16 3 C 0.47 13.65 6.68 71.24 0.48 14.12 16 4 O -0.51 -19.32 13.53 21.94 0.30 -19.02 16 5 C 0.14 3.77 2.78 43.45 0.12 3.89 16 6 H 0.16 3.47 8.14 -2.39 -0.02 3.45 16 7 C -0.14 -3.40 5.05 -19.87 -0.10 -3.50 16 8 C -0.11 -2.13 8.75 22.33 0.20 -1.93 16 9 C -0.13 -2.10 10.05 22.22 0.22 -1.88 16 10 C -0.11 -1.91 10.05 22.23 0.22 -1.68 16 11 C -0.13 -2.80 9.66 22.33 0.22 -2.58 16 12 C -0.08 -1.91 5.10 -19.85 -0.10 -2.01 16 13 C -0.12 -3.37 5.15 29.82 0.15 -3.21 16 14 C 0.06 1.84 5.58 86.22 0.48 2.32 16 15 N -0.50 -18.10 4.42 -884.69 -3.91 -22.01 16 16 C 0.04 1.54 4.28 85.56 0.37 1.91 16 17 C 0.45 23.62 7.45 87.66 0.65 24.27 16 18 O -0.61 -35.46 14.14 -3.09 -0.04 -35.50 16 19 N -0.58 -32.02 5.29 -306.98 -1.62 -33.65 16 20 C -0.33 -19.66 9.68 84.04 0.81 -18.85 16 21 H 0.08 5.10 7.16 -2.91 -0.02 5.08 16 22 C -0.01 -0.82 5.50 84.92 0.47 -0.35 16 23 N -0.92 -52.05 13.05 21.66 0.28 -51.77 16 24 Si 1.00 44.39 29.55 68.60 2.03 46.42 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 28 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.05 1.03 8.13 -2.39 -0.02 1.01 16 30 H 0.06 1.08 8.13 -2.38 -0.02 1.06 16 31 H 0.16 2.75 5.09 -2.93 -0.01 2.73 16 32 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 33 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 34 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.06 1.95 6.72 -2.39 -0.02 1.94 16 36 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.08 3.07 6.25 -2.39 -0.01 3.06 16 38 H 0.10 2.68 8.05 -2.39 -0.02 2.66 16 39 H 0.11 4.71 4.77 -2.89 -0.01 4.70 16 40 H 0.06 2.35 5.36 -2.38 -0.01 2.34 16 41 H 0.39 21.17 7.90 -92.71 -0.73 20.44 16 42 H 0.28 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -75.07 338.94 2.40 -72.67 By element: Atomic # 1 Polarization: 38.09 SS G_CDS: 0.34 Total: 38.43 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: 5.38 Total: 12.07 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -5.25 Total: -107.42 kcal Atomic # 8 Polarization: -62.06 SS G_CDS: -0.10 Total: -62.16 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -75.07 2.40 -72.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362434516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.918 kcal (2) G-P(sol) polarization free energy of solvation -75.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds