Wall clock time and date at job start Fri Apr 10 2020 18:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34231 * 116.99605 * 2 1 4 4 O 1.20818 * 120.00153 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99766 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.59405 * 333.32301 * 5 3 2 7 7 C 1.52982 * 109.59555 * 93.62579 * 5 3 2 8 8 N 1.46008 * 110.04345 * 170.06249 * 7 5 3 9 9 C 1.33722 * 122.92844 * 341.84606 * 8 7 5 10 10 O 1.21277 * 118.62452 * 181.68333 * 9 8 7 11 11 C 1.50256 * 122.74772 * 1.65673 * 9 8 7 12 12 N 1.46881 * 109.98873 * 342.84477 * 11 9 8 13 13 C 1.46905 * 111.00437 * 173.64694 * 12 11 9 14 14 C 1.50700 * 109.47050 * 50.59584 * 13 12 11 15 15 C 1.38630 * 119.75250 * 269.72476 * 14 13 12 16 16 C 1.37621 * 120.25007 * 179.76686 * 15 14 13 17 17 C 1.40712 * 119.74123 * 0.48357 * 16 15 14 18 18 C 1.41400 * 120.23963 * 179.78923 * 17 16 15 19 19 H 1.08000 * 119.99660 * 151.31778 * 18 17 16 20 20 C 1.39943 * 120.00361 * 331.31039 * 18 17 16 21 21 N 1.30820 * 120.00166 * 162.60029 * 20 18 17 22 22 Si 1.86807 * 119.99858 * 342.60864 * 20 18 17 23 23 H 1.48498 * 109.47059 * 92.45270 * 22 20 18 24 24 H 1.48495 * 109.46753 * 212.45257 * 22 20 18 25 25 H 1.48499 * 109.46851 * 332.44828 * 22 20 18 26 26 C 1.40712 * 119.51584 * 359.77165 * 17 16 15 27 27 C 1.37618 * 119.74271 * 359.97438 * 26 17 16 28 28 H 1.09000 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47709 * 300.00234 * 1 2 3 30 30 H 1.08997 * 109.47101 * 60.00915 * 1 2 3 31 31 H 1.08994 * 109.37584 * 290.24251 * 7 5 3 32 32 H 1.09006 * 109.37325 * 50.01007 * 7 5 3 33 33 H 0.97002 * 118.53663 * 161.86055 * 8 7 5 34 34 H 1.09004 * 109.38311 * 102.98151 * 11 9 8 35 35 H 1.08993 * 109.38528 * 222.66786 * 11 9 8 36 36 H 1.09000 * 109.47022 * 170.59895 * 13 12 11 37 37 H 1.08998 * 109.46709 * 290.59483 * 13 12 11 38 38 H 1.07999 * 119.87093 * 0.02562 * 15 14 13 39 39 H 1.07995 * 120.12625 * 180.23902 * 16 15 14 40 40 H 0.96997 * 120.00202 * 180.02562 * 21 20 18 41 41 H 1.07996 * 120.13140 * 179.97438 * 26 17 16 42 42 H 1.08005 * 119.87235 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9792 0.3778 0.4620 7 6 4.0744 1.3926 -1.4376 8 7 5.5007 1.7051 -1.4404 9 6 6.1389 2.1983 -0.3738 10 8 7.3192 2.4588 -0.4721 11 6 5.4545 2.4437 0.9412 12 7 3.9980 2.4639 0.7531 13 6 3.3016 2.5517 2.0437 14 6 3.8806 3.6849 2.8508 15 6 4.9437 3.4461 3.7080 16 6 5.4834 4.4744 4.4463 17 6 4.9455 5.7700 4.3363 18 6 5.4891 6.8334 5.0934 19 1 5.4364 7.8450 4.7188 20 6 6.0952 6.5751 6.3281 21 7 6.8862 7.4664 6.8677 22 14 5.7748 4.9574 7.2056 23 1 6.8197 3.9729 6.8260 24 1 5.8101 5.1754 8.6740 25 1 4.4397 4.4380 6.8142 26 6 3.8630 5.9997 3.4672 27 6 3.3427 4.9574 2.7345 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 3.9099 0.4488 -1.9575 32 1 3.5310 2.1869 -1.9493 33 1 6.0079 1.5481 -2.2522 34 1 5.7178 1.6495 1.6398 35 1 5.7807 3.4019 1.3455 36 1 2.2404 2.7327 1.8723 37 1 3.4272 1.6161 2.5886 38 1 5.3524 2.4501 3.7934 39 1 6.3141 4.2869 5.1106 40 1 7.3066 7.2873 7.7232 41 1 3.4422 6.9900 3.3753 42 1 2.5121 5.1314 2.0664 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447923909.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:15 Heat of formation + Delta-G solvation = -103.732001 kcal Electronic energy + Delta-G solvation = -26930.471519 eV Core-core repulsion = 23067.794636 eV Total energy + Delta-G solvation = -3862.676883 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.20454 -40.97095 -39.87069 -38.42827 -37.31712 -36.22383 -35.25616 -32.81515 -31.73847 -31.39393 -29.49796 -28.53945 -26.98210 -25.34541 -24.23857 -23.29847 -22.33970 -21.72185 -20.27582 -19.38100 -19.17085 -18.49497 -18.12058 -17.48186 -17.36927 -17.01401 -16.53625 -16.20156 -15.88987 -15.77034 -15.63096 -15.23766 -15.11503 -14.58052 -14.44462 -14.32699 -14.12014 -14.02233 -13.71874 -13.54299 -13.10858 -12.93824 -12.83125 -12.79345 -12.59503 -12.43784 -12.03004 -11.76795 -11.62859 -11.48295 -11.43238 -11.07675 -10.96021 -10.22173 -9.68001 -9.49484 -9.33822 -8.91632 -6.51516 0.69647 0.88021 0.98194 1.24796 1.38190 1.41852 1.48308 1.50691 2.10821 2.18144 2.44681 2.79074 3.46292 3.46894 3.53523 3.67181 3.87108 4.03607 4.11720 4.20029 4.34845 4.36841 4.39539 4.41897 4.44991 4.56289 4.70295 4.72340 4.77049 4.80423 5.00962 5.08378 5.27841 5.31202 5.51031 5.56420 5.63483 5.74587 5.86585 5.89742 6.05249 6.08997 6.25047 6.40073 6.68015 6.73481 6.81782 7.07911 8.17179 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.015973 B = 0.003813 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.576717 B = 7341.097132 C = 8301.306596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.476 3.524 4 O -0.506 6.506 5 C 0.068 3.932 6 H 0.109 0.891 7 C 0.131 3.869 8 N -0.701 5.701 9 C 0.526 3.474 10 O -0.592 6.592 11 C 0.047 3.953 12 N -0.518 5.518 13 C 0.113 3.887 14 C -0.198 4.198 15 C -0.067 4.067 16 C -0.253 4.253 17 C 0.077 3.923 18 C -0.487 4.487 19 H 0.052 0.948 20 C 0.045 3.955 21 N -0.851 5.851 22 Si 0.972 3.028 23 H -0.256 1.256 24 H -0.279 1.279 25 H -0.252 1.252 26 C -0.226 4.226 27 C -0.056 4.056 28 H 0.134 0.866 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.136 0.864 32 H 0.080 0.920 33 H 0.415 0.585 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.294 0.706 41 H 0.096 0.904 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.183 -21.569 -14.430 28.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.271 6.271 3 C 0.317 3.683 4 O -0.393 6.393 5 C -0.042 4.042 6 H 0.127 0.873 7 C 0.007 3.993 8 N -0.354 5.354 9 C 0.313 3.687 10 O -0.473 6.473 11 C -0.083 4.083 12 N -0.246 5.246 13 C -0.013 4.013 14 C -0.199 4.199 15 C -0.086 4.086 16 C -0.272 4.272 17 C 0.075 3.925 18 C -0.516 4.516 19 H 0.071 0.929 20 C -0.169 4.169 21 N -0.477 5.477 22 Si 0.796 3.204 23 H -0.181 1.181 24 H -0.206 1.206 25 H -0.176 1.176 26 C -0.246 4.246 27 C -0.074 4.074 28 H 0.152 0.848 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.153 0.847 32 H 0.099 0.901 33 H 0.253 0.747 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.143 0.857 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.114 0.886 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -10.923 -20.547 -14.399 27.365 hybrid contribution 0.377 -0.023 0.921 0.995 sum -10.546 -20.571 -13.479 26.759 Atomic orbital electron populations 1.23593 0.74302 1.05877 1.02703 1.86492 1.25181 1.31860 1.83522 1.23069 0.90973 0.81731 0.72530 1.90723 1.67123 1.37227 1.44205 1.21734 0.88731 0.95365 0.98372 0.87341 1.21520 0.80106 1.04612 0.93053 1.45330 1.10650 1.64573 1.14859 1.20266 0.86386 0.75433 0.86588 1.90770 1.18076 1.53706 1.84706 1.22231 0.86890 1.05004 0.94183 1.62551 1.04198 1.37325 1.20542 1.20991 0.98298 0.95700 0.86315 1.19202 1.01846 0.94774 1.04088 1.20808 0.95049 0.97769 0.94942 1.21139 1.04221 0.94534 1.07325 1.17875 0.90302 0.92427 0.91914 1.19533 1.33061 0.95032 1.03989 0.92947 1.26893 0.90688 1.01577 0.97767 1.69721 1.21903 1.37922 1.18197 0.85425 0.81202 0.77737 0.76083 1.18150 1.20554 1.17559 1.21163 0.99831 0.98750 1.04835 1.20744 0.98147 0.92359 0.96174 0.84815 0.92332 0.91424 0.84665 0.90148 0.74675 0.89101 0.88044 0.89516 0.92697 0.85714 0.88447 0.89561 0.88555 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.48 16 2 O -0.35 -5.02 10.57 -51.42 -0.54 -5.57 16 3 C 0.48 8.81 6.01 71.24 0.43 9.23 16 4 O -0.51 -12.91 14.72 21.99 0.32 -12.58 16 5 C 0.07 1.14 2.48 44.11 0.11 1.25 16 6 H 0.11 1.38 8.08 -2.38 -0.02 1.36 16 7 C 0.13 1.65 6.69 86.47 0.58 2.23 16 8 N -0.70 -12.31 5.52 -466.09 -2.57 -14.88 16 9 C 0.53 14.26 7.81 87.68 0.69 14.94 16 10 O -0.59 -21.36 17.82 -3.02 -0.05 -21.41 16 11 C 0.05 1.28 4.40 85.42 0.38 1.66 16 12 N -0.52 -12.99 4.54 -884.66 -4.02 -17.01 16 13 C 0.11 3.13 4.57 85.56 0.39 3.52 16 14 C -0.20 -7.20 4.35 -19.68 -0.09 -7.29 16 15 C -0.07 -2.60 8.00 22.22 0.18 -2.42 16 16 C -0.25 -11.89 7.20 22.73 0.16 -11.72 16 17 C 0.08 4.03 5.14 -21.29 -0.11 3.92 16 18 C -0.49 -28.18 9.58 23.46 0.22 -27.96 16 19 H 0.05 3.28 8.06 -2.91 -0.02 3.26 16 20 C 0.05 2.47 5.42 85.26 0.46 2.93 16 21 N -0.85 -47.91 13.93 21.83 0.30 -47.61 16 22 Si 0.97 43.44 24.48 68.60 1.68 45.12 16 23 H -0.26 -10.76 6.56 99.48 0.65 -10.10 16 24 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.25 -11.37 6.91 99.48 0.69 -10.68 16 26 C -0.23 -10.77 9.80 22.73 0.22 -10.55 16 27 C -0.06 -2.26 9.67 22.22 0.21 -2.05 16 28 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.69 8.13 -2.39 -0.02 0.67 16 30 H 0.07 0.65 8.13 -2.39 -0.02 0.63 16 31 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 1.13 8.11 -2.38 -0.02 1.11 16 33 H 0.41 5.76 8.84 -92.71 -0.82 4.94 16 34 H 0.09 2.15 7.85 -2.38 -0.02 2.13 16 35 H 0.10 3.55 6.53 -2.39 -0.02 3.53 16 36 H 0.09 2.52 5.89 -2.39 -0.01 2.51 16 37 H 0.05 1.30 8.06 -2.39 -0.02 1.28 16 38 H 0.13 3.96 7.80 -2.91 -0.02 3.93 16 39 H 0.10 4.61 4.43 -2.91 -0.01 4.60 16 40 H 0.29 14.82 8.30 -92.71 -0.77 14.05 16 41 H 0.10 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.12 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -73.09 344.44 0.32 -72.77 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.17 Total: 22.00 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 5.03 Total: -20.82 kcal Atomic # 7 Polarization: -73.21 SS G_CDS: -6.29 Total: -79.50 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -0.27 Total: -39.56 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.68 Total: 45.12 kcal Total: -73.09 0.32 -72.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447923909.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.960 kcal (2) G-P(sol) polarization free energy of solvation -73.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds